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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024000 ID=TCONS_00024000|Name=TCONS_00024000|organism=Clytia hemisphaerica|type=transcript|length=1444bpRun BLAST on NCBI protein sequence of TCONS_00024000-protein >TCONS_00024000-protein ID=TCONS_00024000-protein|Name=TCONS_00024000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp MKLLWKNFEKNGKGQVGLIPEEPEDMWHAYNLVANRDLLKSTTIRKVQTERun BLAST on NCBI transcript from alignment at sc0000470:131556..157114+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024000 ID=TCONS_00024000|Name=TCONS_00024000|organism=Clytia hemisphaerica|type=transcript|length=25559bp|location=Sequence derived from alignment at sc0000470:131556..157114+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000470:131556..157114+ >TCONS_00024000 ID=TCONS_00024000|Name=TCONS_00024000|organism=Clytia hemisphaerica|type=CDS|length=16590bp|location=Sequence derived from alignment at sc0000470:131556..157114+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024000 vs. Swiss-Prot (Human)
Match: PELO (Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2) HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0 Identity = 248/368 (67.39%), Postives = 306/368 (83.15%), Query Frame = 1
Query: 160 MKLLWKNFEKNGKGQVGLIPEEPEDMWHAYNLVANRDLLKSTTIRKVQTESATGSTSSNKIRTTLTIQVEATDFDIQACVLRVKGRNVEENQYVKMGQYHTIDLELNRKFVLTKLEWDIVSIERIELACDAAKQADLGAIVMQEGIAHVCLVLSTMTIVRAKIEVNIPRKRRGNCTQHDKGLFKFYDQVIQAALRHFNFEVLKCILVASPGFVKDQFSEYMFNQAVKLEQKVLIENKSKFLMVHASSGFKHSLKEVLAEPAVLAKLSDTKAAGEVKTLDAFYSMLQSEPDRAFYGIGYVERANEMAAIETLMVTDELFRSQELATRKRYVNLVEGVRDNNGEVKIFSSLHVSGEQLGQLSGVAAILRF 1263
MKL+ KN EK+ GQV L+PEEPEDMWH YNLV D L+++TIRKVQTES+TGS SN++RTTLT+ VEA DFD QAC LRVKG N++EN+YVKMG YHTI+LE NR+F L K +WD V +ERIE ACD A AD+ A+VMQEG+AH+CLV +MT+ RAK+EVNIPRKR+GNC+QHD+ L +FY+QV+QA RH +F+V+KCILVASPGFV++QF +Y+F QAVK + K+L+EN+SKFL VHASSG K+SLKE L +P V ++LSDTKAAGEVK LD FY MLQ EPDRAFYG+ VE+ANE AI+TL+++DELFR Q++ATR RYV LV+ V++N G V+IFSSLHVSGEQL QL+GVAAILRF
Sbjct: 1 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNRVRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQQAVKTDNKLLLENRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGVAAILRF 368 The following BLAST results are available for this feature:
BLAST of TCONS_00024000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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