TCONS_00023422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023422
Unique NameTCONS_00023422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3078

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023422 ID=TCONS_00023422|Name=TCONS_00023422|organism=Clytia hemisphaerica|type=transcript|length=3078bp
ACGAGATTTTGTTGGAAATTAAAGAATTACTGGCAAATGAAATTATATTA
ATGATCATGATATGAAAAGAGTTTGGAATCCTTTTTTACGAATTGAGTGA
TAAGTATAAACTCCAAAGGTATATTTTCCGAGAAACAATTTGAAATCCGA
AGATCCCTCGATGAAATTCCACAAAAGAATCGTATCAAAAGATTCATCAA
AAAAGTTAGATGAAAATTTGAACCACTAAATAGAAGAacattctttaaaa
atttcagtATGTATCAACTACGGAGTAATAATTTCTGGGAATGGTTTTCG
AGACACTGGCGCAGTTTTTGTATTATATTATTTGTTGCTTGCTCGTGTAT
ACTGATAGCACTCATCTCAATAGTAGCATGGTCCTATTATAATGGCGTTG
TAGCAACCACCCATAGCAACGGAGAGCGTCCTAAAACTGAATTTTTGGAT
CAACAATGGGTTCCAGACTCTTCAAACGCGTTAACGAATCGACCAAATTT
TGTAAACTCTGATTCAAGCGAGTTGAATTTTGATGAACTACAGAATTCAA
ATAGTGTAAATAGTGCTTTAATGCACCCGGTAGAAGGAGCTTTAGAAAAC
GGTGTGTTGCAATCAGTAAGCCGTGATTCGTTGTTGGCGCCGCAGGTAGC
CAGCGGACCCACCCAATCACAACAAGACTATAATGAATTTATGAAGGCTA
GCGAAGAGCAAAAGAAGTTTGAAGAGCAGCAAAACTTCTTACAAATGTAT
TCACAAGCAAAACCGGACAGTTTTTTAGCGGACACTCAATTTAATCCATC
AGCACAACAAAACACAGACCCGGAACCTCCGAAATCCCCAGAACCACAAA
ATGCAGACCAGGCGAAATCAGACCCACCGAAACCAGCAATGACTTTATAT
AAAGTAACAAAAGCGACCAAAGGTGGCGCCGTATGTTTGGATGGGTCCCC
ACCCGCTTATTATCATAGGCCTGGAATAGGGCCGAATGAACGGTCCTGGA
TTATACACTTCAATGGTGGTGCATGGTGTTTTGATCCTAGCGCATGCGTA
GAACGTAGTCATAGTTCATTAGGTTCAACTAATAAGTTACCAAAATCACC
ACCCATCATCCAAGGAATAAATTCACCGAACCCTCAAGTCAATCCTGATT
TTTATGACTGGAATTTAGTTTGGGTTGTGTATTGTGATGGTGCTTCATTT
ACTGGCAATCGAGAAAGACCAATAATTTCGAAATCTGGTCAAACAATTTA
TCTGCGTGGAAAACGCGTTTTGAACGCGATTATTAATGATTTGTTATTCA
ACCGCGGTTTCAAAAGCGCAGAATCCGTAATTTTAACAGGATCTTCTGCT
GGAAGTATGGCAGCCATTTTTCAAGCAGATTACATCGCTTCAAGATTCCC
GACAACTGTTCCGGTCCGTGTTTTAGCGGATGCTGGATTCTTCATAGATA
CGGCACCGATAGGtggtaaaagtttagaaatagCTTTCAAGAAAGTTTAT
GAGATGCAGAATGCAAGCGCGGGCTTGAATCAAGATTGTACAAATGACTT
TAAGAACCAACCCTGGAAATGTTTTCTACCAGCGATAGCAACGCAATACG
TCAAAACACCAATGTATGTTCTCAACTCAGCATATGATATATGGGCATTA
ATTTATTTCTTGGGAATTGATTGTAAATTTTCGGCAACTGGAGAAAAAGT
TCAACGTAAAAGACGTCAATTTGAGATGTTAGAACAAGAGGGAAATCGTA
AGATTACGCCTGATCAGAAATTAAAAAGAGACGTTTCAGGCTTTGAGATG
CGTCCATTTTTCAGGAGTTATATCAGCAAATTACACCACACAGTTCACAA
TGTCATTTCATCATTTACTTCCAAAACCAGAAACTTTAGAAAAGCTTCAG
AGAttcaaaacattacatcatctTATCTACGCAACCGTACCTCAATAGCC
CAAACCAGAGACGCTCATAttttcaaccaaaaacattCAATAATTGAGGC
CAACAACACGACTTTGCGGAATTTTTACTCGACTAAACAAACACAAGATT
TAGACATTCCTAACCAAAGACATAAGGTTATCGAGGCTAAAAATATGACA
ACAGAACATTCAGTAATTAAAGCGAGGAATACTTCCCTAGCTCAGCATTC
CCTTCTCGTTATGACTAGCACTAATGCAACATCTATAACAAACCAGACTG
TATCTAGCTCCCTACCTTCTTCATCAAGCTCCCTACTACCTGTATCAAGC
TCCCACCTGCCAGCATCTAGCTCCCTCCTACCTCTACATAACACATCCTT
GGCTTCACAAAGTGAACGTGTCAAGAAAACAGGAGTACAGCAAAAACCAA
CCAAAAAGAACAGTTTTAGTCAGAATCTGAAAAGCATTGAAGGCATTGTA
CCAGAGCAGATAAAACAACTCCAGCAAATTTCAGATGAGACACAGTCTGT
CTTAAACCATCATATATCAGCAGATCTTAGTAAATCAAACACACCAAAGC
CTACTAAAGGTGAGAAACGAAGCGGTACGCCTCACATTATAGATGCATTT
TATAAGAGGAAGGGACACCAGACGATGGCTAACCccaataatttcacaga
tttcataacaaaatcaaacaagaaAAGACATGTTTTGAAACAAAGACGTT
CTACAAGTATTGCAAGAGAGTATATTAACATTCTTCGGTCAGATCCTCCC
GAATGCACTGCTGGTGAAATGACGAAAGCTCTACAGTATAGAGATGCTAT
TTTGAAAGCTACTAATAACGCACTTTCACCCGATTCAGGTCGATTCATTG
TATCGTGTATCGATCATTCGATGTCTCTATTCGATGAAACTTGGACGGGC
ATCAAAATACACGATAAATCGATACAACAAGCTTTTGGAGACTGGTTTTT
CAATCGGGTTCCTCGAGAGAAATCGACTCTAGTCGATTGTAAATATCCGT
GCAACCAGTCCTGTCCTTAAAGATCTTTGATTAAAgaattgatgattttt
aatgttATAATATAAttagaaaaattccaaaaagatAATAATAATTTTGG
ATACAAAATATGCAAAGTCTCTTCAAAC
Run BLAST on NCBI

transcript from alignment at sc0000453:213222..216354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023422 ID=TCONS_00023422|Name=TCONS_00023422|organism=Clytia hemisphaerica|type=transcript|length=3133bp|location=Sequence derived from alignment at sc0000453:213222..216354- (Clytia hemisphaerica)
ACGAGATTTTGTTGGAAATTAAAGAATTACTGGCAAATGAAATTATATTA
ATGATCATGATATGAAAAGAGTTTGGAATCCTTTTTTACGAATTGAGTGA
TAAGTATAAACTCCAAAGGTATATTTTCCGAGAAACAATTTGAAATCCGA
AGATCCCTCGATGAAATTCCACAAAAGAATCGTATCAAAAGATTCATCAA
AAAAGTTAGATGAAAATTTGAACCACTAAATAGAAGAACATTCTTTAAAA
ATTTCAGTATGTATCAACTACGGAGTAATAATTTCTGGGAATGGTTTTCG
AGACACTGGCGCAGTTTTTGTATTATATTATTTGTTGCTTGCTCGTGTAT
ACTGATAGCACTCATCTCAATAGTAGCATGGTCCTATTATAATGGCGTTG
TAGCAACCACCCATAGCAACGGAGAGCGTCCTAAAACTGAATTTTTGGAT
CAACAATGGGTTCCAGACTCTTCAAACGCGTTAACGAATCGACCAAATTT
TGTAAACTCTGATTCAAGCGAGTTGAATTTTGATGAACTACAGAATTCAA
ATAGTGTAAATAGTGCTTTAATGCACCCGGTAGAAGGAGCTTTAGAAAAC
GGTGTGTTGCAATCAGTAAGCCGTGATTCGTTGTTGGCGCCGCAGGTAGC
CAGCGGACCCACCCAATCACAACAAGACTATAATGAATTTATGAAGGCTA
GCGAAGAGCAAAAGAAGTTTGAAGAGCAGCAAAACTTCTTACAAATGTAT
TCACAAGCAAAACCGGACAGTTTTTTAGCGGACACTCAATTTAATCCATC
AGCACAACAAAACACAGACCCGGAACCTCCGAAATCCCCAGAACCACAAA
ATGCAGACCAGGCGAAATCAGACCCACCGAAACCAGCAATGACTTTATAT
AAAGTAACAAAAGCGACCAAAGGTGGCGCCGTATGTTTGGATGGGTCCCC
ACCCGCTTATTATCATAGGCCTGGAATAGGGCCGAATGAACGGTCCTGGA
TTATACACTTCAATGGTGGTGCATGGTGTTTTGATCCTAGCGCATGCGTA
GAACGTAGTCATAGTTCATTAGGTTCAACTAATAAGTTACCAAAATCACC
ACCCATCATCCAAGGAATAAATTCACCGAACCCTCAAGTCAATCCTGATT
TTTATGACTGGAATTTAGTTTGGGTTGTGTATTGTGATGGTGCTTCATTT
ACTGGCAATCGAGAAAGACCAATAATTTCGAAATCTGGTCAAACAATTTA
TCTGCGTGGAAAACGCGTTTTGAACGCGATTATTAATGATTTGTTATTCA
ACCGCGGTTTCAAAAGCGCAGAATCCGTAATTTTAACAGGATCTTCTGCT
GGAAGTATGGCAGCCATTTTTCAAGCAGATTACATCGCTTCAAGATTCCC
GACAACTGTTCCGGTCCGTGTTTTAGCGGATGCTGGATTCTTCATAGATA
CGGCACCGATAGGTGGTAAAAGTTTAGAAATAGCTTTCAAGAAAGTTTAT
GAGATGCAGAATGCAAGCGCGGGCTTGAATCAAGATTGTACAAATGACTT
TAAGAACCAACCCTGGAAATGTTTTCTACCAGCGATAGCAACGCAATACG
TCAAAACACCAATGTATGTTCTCAACTCAGCATATGATATATGGGCATTA
ATTTATTTCTTGGGAATTGATTGTAAATTTTCGGCAACTGGAGAAAAAGT
TCAACGTAAAAGACGTCAATTTGAGATGTTAGAACAAGAGGGAAATCGTA
AGATTACGCCTGATCAGAAATTAAAAAGAGACGTTTCAGGCTTTGAGATG
CGTCCATTTTTCAGGAGTTATATCAGCAAATTACACCACACAGTTCACAA
TGTCATTTCATCATTTACTTCCAAAACCAGAAACTTTAGAAAAGCTTCAG
AGATTCAAAACATTACATCATCTTATCTACGCAACCGTACCTCAATAGCC
CAAACCAGAGACGCTCATATTTTCAACCAAAAACATTCAATAATTGAGGC
CAACAACACGACTTTGCGGAATTTTTACTCGACTAAACAAACACAAGATT
TAGACATTCCTAACCAAAGACATAAGGTTATCGAGGCTAAAAATATGACA
ACAGAGCATTCAGTAATCNCAAAGACATAAGGTTATCGAGGCTAAAAATA
TGACAACAGAACATTCAGTAATTAAAGCGAGGAATACTTCCCTAGCTCAG
CATTCCCTTCTCGTTATGACTAGCACTAATGCAACATCTATAACAAACCA
GACTGTATCTAGCTCCCTACCTTCTTCATCAAGCTCCCTACTACCTGTAT
CAAGCTCCCACCTGCCAGCATCTAGCTCCCTCCTACCTCTACATAACACA
TCCTTGGCTTCACAAAGTGAACGTGTCAAGAAAACAGGAGTACAGCAAAA
ACCAACCAAAAAGAACAGTTTTAGTCAGAATCTGAAAAGCATTGAAGGCA
TTGTACCAGAGCAGATAAAACAACTCCAGCAAATTTCAGATGAGACACAG
TCTGTCTTAAACCATCATATATCAGCAGATCTTAGTAAATCAAACACACC
AAAGCCTACTAAAGGTGAGAAACGAAGCGGTACGCCTCACATTATAGATG
CATTTTATAAGAGGAAGGGACACCAGACGATGGCTAACCCCAATAATTTC
ACAGATTTCATAACAAAATCAAACAAGAAAAGACATGTTTTGAAACAAAG
ACGTTCTACAAGTATTGCAAGAGAGTATATTAACATTCTTCGGTCAGATC
CTCCCGAATGCACTGCTGGTGAAATGACGAAAGCTCTACAGTATAGAGAT
GCTATTTTGAAAGCTACTAATAACGCACTTTCACCCGATTCAGGTCGATT
CATTGTATCGTGTATCGATCATTCGATGTCTCTATTCGATGAAACTTGGA
CGGGCATCAAAATACACGATAAATCGATACAACAAGCTTTTGGAGACTGG
TTTTTCAATCGGGTTCCTCGAGAGAAATCGACTCTAGTCGATTGTAAATA
TCCGTGCAACCAGTCCTGTCCTTAAAGATCTTTGATTAAAGAATTGATGA
TTTTTAATGTTATAATATAATTAGAAAAATTCCAAAAAGATAATAATAAT
TTTGGATACAAAATATGCAAAGTCTCTTCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013173XLOC_013173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023422-exon-sc0000453-1575043694:214270..216354TCONS_00023422-exon-sc0000453-1575043694:214270..216354Clytia hemisphaericaexon
TCONS_00023422-exon-sc0000453-1575043694:213222..214214TCONS_00023422-exon-sc0000453-1575043694:213222..214214Clytia hemisphaericaexon
TCONS_00023422-exon-sc0000453-1510915933:214270..216354TCONS_00023422-exon-sc0000453-1510915933:214270..216354Clytia hemisphaericaexon
TCONS_00023422-exon-sc0000453-1510915933:213222..214214TCONS_00023422-exon-sc0000453-1510915933:213222..214214Clytia hemisphaericaexon
TCONS_00023422-exon-sc0000453-1491911889:214270..216354TCONS_00023422-exon-sc0000453-1491911889:214270..216354Clytia hemisphaericaexon
TCONS_00023422-exon-sc0000453-1491911889:213222..214214TCONS_00023422-exon-sc0000453-1491911889:213222..214214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:213222..216354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865612	0.0844108	0	0	0	0	5.21655	5.00123	0.447059	0.790713	2.34493	0.704285	2.4891	0.781544	0.737361	3.39147	2.27876	2.14948	0	0	0.989424	1.35876	1.36463	2.05706	0.952251	3.53633	0.164399	0.235156	0	0.0559351
Blast
[Close]
BLAST of TCONS_00023422 vs. Swiss-Prot (Human)
Match: NOTUM (Palmitoleoyl-protein carboxylesterase NOTUM OS=Homo sapiens GN=NOTUM PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.701e-18
Identity = 68/252 (26.98%), Postives = 114/252 (45.24%), Query Frame = 1 
Query:  934 CLDGSPPAYYHRPGIGPNERSWIIHFNGGAWCFDPSACVER--SHSSLGSTNKLPKSPPIIQGINSPNPQVNPDFYDWNLVWVVYCDGASFTGNRERPIISKSGQTIY-LRGKRVLNAIINDLLFNRGFKSAESVILTGSSAGSMAAIFQADYIASRFPT----TVPVRVLADAGFFIDTA---------PIGGKSLEIAFKKVYEMQNASAGLNQDCTNDFK-NQPWKCFLPAIATQYVKTPMYVLNSAYD 1638
            C DGSP  YY +   G   R W++   GG +CF+   C  R  +   L S+   P++     GI S  P+ NP +++ N+V++ YC    ++G       SKS +  Y   G  ++  ++ +LL  RG   A+ ++L GSSAG    +   D +A +        + VR LAD+G+F+D            I     E A ++     N    + + C   F+  + W CF        ++ P++V+   +D
Sbjct:  101 CNDGSPAGYYLKESRG--SRRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTR-TGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGAS-----SKSEKNEYAFMGALIIQEVVRELL-GRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTE-AIRRGIRYWNGV--VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFD 340
The following BLAST results are available for this feature:
BLAST of TCONS_00023422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOTUM5.701e-1826.98Palmitoleoyl-protein carboxylesterase NOTUM OS=Hom... [more]
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