TCONS_00023413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023413
Unique NameTCONS_00023413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023413 ID=TCONS_00023413|Name=TCONS_00023413|organism=Clytia hemisphaerica|type=transcript|length=716bp
TGCGCTCACTCCTCTTCGTTTAGTTTGCGCTTTAATAATGGTATCCTAGT
TGCGTAAACTTTCCCTGTATTCTGCTCATACTTCATTCAGTGCCAATCGA
CTGTGCTCTTATATCCAAATTGACAAACACACATTGCTAGTTATCTCGTT
ATGGATTCTAATAAGcaagaaaaagGAACAACTAACAAGAGAACCTTGAA
AGAAAACCAACCATCATCAGTTAAAGGTATACATCATTGTTTTTAATGTG
ATGTTCTTCTTCTTAAAATCTAACCATTAGCCGATATTCAATCCAATTCT
TTCCCCTAAACTCCTTTAAGAATCTACATGttacattttgtacattaaag
AAGGGTATAATTAGctataaaaatcatttttaaaacattattgAGAACCT
TAATAAAAATGAATCAGGCCCTTTTTTGAAGAGAAGGACGAAAGGGTGAG
TTTTTTACATAATATTGAGAAGGGAGGTTTTAAGATGGGCTTTGAAGGGT
CCAATGACACCCATTATGTTTCAGTAAAAtacttttcaaccttttttcag
CTACAAGTAAATACAGTAATTCAGTAATTTACTTGTACAAATTACTGACC
GATTAACAATCTAACTAACTAactgacatgacatgacatgacatcttact
aaaaattactaaaatcaCGATGACTTTAACATTGGACAATTCGACGTTGG
ACAATTGACTGGGANt
Run BLAST on NCBI

transcript from alignment at sc0000453:87517..91480-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023413 ID=TCONS_00023413|Name=TCONS_00023413|organism=Clytia hemisphaerica|type=transcript|length=3964bp|location=Sequence derived from alignment at sc0000453:87517..91480- (Clytia hemisphaerica)
TGCGCTCACTCCTCTTCGTTTAGTTTGCGCTTTAATAATGGTATCCTAGT
TGCGTAAACTTTCCCTGTATTCTGCTCATACTTCATTCAGTGCCAATCGA
CTGTGCTCTTATATCCAAATTGACAAACACACATTGCTAGTTATCTCGTT
ATGGATTCTAATAAGCAAGAAAAAGGTTTGTTTGTTTTATTTTTTCAAAT
TTCATCACAGAAGGATCATCAATCAGTGGGTAATCATCTGACCTCTGACA
TCTGATATCATCCACAGACCACAATCGATATAATAATATGGATCAGCTTT
AGCTAGTGCTAGTGCGCTAGTTAGTAGGATGATANAACCCGTTATCACCG
TTAAATCAACGATAATCATTAATTTCGCAAGAGTCTTAAATCAATGATTA
TCCGTGATTTTTAAGTGCCGTGTCCGCCGCCTTGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CAGATTGGTAGGCAAATGGATTGTTTGGATTGATAGGTCGGCGGGGGATC
GATGGTTGCTCAATGAATTGGTGGGTGGGATGGATGAATGGATCGGTCAA
TGAGTTGGTAGGTTGATGGATTGGTAGGTCAACAGATTGGCTAGTGGATA
GATCACTAGGTGGATAAATCGTGAGGTTGTTTGAATGTTTAGTAGTGCGA
TAATCAAAGCGCTAGATAAATACCCACTGAAAATTGAAACTAGGAATTTA
TTGAAATATTTCACTGAAGCATCAAACTTGTTTATTTTTTTATATAATTA
TGAATTAAAAGTTTTAATTGTTTGGAAATCATAGGACAATTAAAGTAAAT
TTAAAATGATTGAGTGAATTGGGTGGTCGGGCGTTTTGGAATTATGCTTT
GTCATACTTCTAAGCAACTGAAACCATCCGGGTATAAGTACCGTGAAGTC
AAAATACGGGATAACATGCATAGCCCTCAAATAAATGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTAATATTACATACATTATTAACGCCCCTGTTT
TTTAGTTTTGTCTAGTTTCCAATCTCGGAATATGATGAACCCTCGACTGA
CCGAAATTGCAATTATAAATTATTGTGGAATTGAACATGTAAGGCGAATG
TTGCACTTTGTTATGCACTGGTTAGGTTTATTGGTCGGTAGGTTGATGGG
TCGGTAGGTTGATGGGTTGGTAGGTTGATGGGTCGGTAGGTTGATTGATT
GGTAGGTCAACAAATTAGATGGTTGATGGATTGGTAGATTGATGGGTTTG
TAGGTTGACAGATTGGTTCGTCGATGAATTGGTAGGTTGGTTATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGCTAGGTTTATGGAGTTTCTGTATTTGCTTGGACGAGTAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCATAAAAATGTGCCTTTAAAATTCCTTGTTT
TTCTTCCTGATCTCTCACTTACAACCTAGAAATTCTCCAAATAAAAAGGA
GTAAAAGAAAGATATATTCCTTTCAATAATTTTTTTTTGAAGTTTCTTTT
TGATTAAGTATTTCAAGTAAAGTAAAGACTTGTTTTAAATATATAAATCA
AACAATGTGTGAAAGAAACAGGTTTTAAATTTTGAGTACAAAATGTAGAT
GATTCAATTAAATTGAGGAGTAACTTATAGAAATTAGAAATTATTTTTTA
GGTTATTTTATGATATATTTTATATTTGTCAGGAACAACTAACAAGAGAA
CCTTGAAAGAAAACCAACCATCATCAGTTAAAGGTATACATCATTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACATCATTGTTTTTAATGTGAT
GTTCTTCTTCTTAAAATCTAACCATTAGCCGATATTCAATCCAATTCTTT
CCCCTAAACTCCTTTAAGAATCTACATGTTACATTTTGTACATTAAAGAA
GGGTATAATTAGCTATAAAAATCATTTTTAAAACATTATTGAGAACCTTA
ATAAAAATGAATCAGGCCCTTTTTTGAAGAGAAGGACGAAAGGGTGAGTT
TTTTACATAATATTGAGAAGGGAGGTTTTAAGATGGGCTTTGAAGGGTCC
AATGACACCCATTATGTTTCAGTAAAATACTTTTCAACCTTTTTTCAGCT
ACAAGTAAATACAGTAATTCAGTAATTTACTTGTACAAATTACTGACCGA
TTAACAATCTAACTAACTAACTGACATGACATGACATGACATCTTACTAA
AAATTACTAAAATCACGATGACTTTAACATTGGACAATTCGACGTTGGAC
AATTGACTGGGANT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013169XLOC_013169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023413-exon-sc0000453-1575043694:91306..91480TCONS_00023413-exon-sc0000453-1575043694:91306..91480Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1575043694:88142..88198TCONS_00023413-exon-sc0000453-1575043694:88142..88198Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1575043694:87517..88000TCONS_00023413-exon-sc0000453-1575043694:87517..88000Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1510915933:91306..91480TCONS_00023413-exon-sc0000453-1510915933:91306..91480Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1510915933:88142..88198TCONS_00023413-exon-sc0000453-1510915933:88142..88198Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1510915933:87517..88000TCONS_00023413-exon-sc0000453-1510915933:87517..88000Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1491911889:91306..91480TCONS_00023413-exon-sc0000453-1491911889:91306..91480Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1491911889:88142..88198TCONS_00023413-exon-sc0000453-1491911889:88142..88198Clytia hemisphaericaexon
TCONS_00023413-exon-sc0000453-1491911889:87517..88000TCONS_00023413-exon-sc0000453-1491911889:87517..88000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:87517..91480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.97893	6.94063	1.80741	1.33425	11.1371	7.44448	9.57294	11.2058	3.46432	4.21593	8.09843	4.69026	5.11808	9.31256	3.16737	4.79241	4.87282	6.34774	5.80961	2.805	4.39794	3.24286	3.63507	5.17019	3.32486	5.10948	3.38783	1.28191	3.403	2.10503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top