TCONS_00023177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023177
Unique NameTCONS_00023177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023177 ID=TCONS_00023177|Name=TCONS_00023177|organism=Clytia hemisphaerica|type=transcript|length=948bp
AAAATTGCGATTGAACCAATTGAATGTAATCCAAGGTGAtggaataattg
caattcgattttcaaacgcaatcaaatctcaatcaaacggctGATTTCTG
GGTAATaaatatttgattgtgttccccattaattgagattcgattatgtt
cgattgattAGTTCAATTACCATACTGTAATGTTCAATTTAGATTGATTG
TAATTAAATTAGCACACTCCTCTAGAGCTTTAGAGCTTGCCATTTGAAAA
TCAGATAAAAGCGAGTGTGTAAGTACCGCACAAGACTAGCTATAGCGATA
TATTAATGTAGAGCAAATGGGTGGGCTATCTCTTTATATTTTCCAGGAGG
ATTTTGTTCAGATTTCAGATTTTCCGGGGGGGTTCATTGAATTTTCTCAG
AGTTTTCAGAGGGATCTCTCCTTATAAAATGACACCAATAATTATTTTCC
CCagatttccaggggataatttGTTGTCATTCAAAATTTCTAGTAGGTTT
GGTGAAAAAGGTTTGTCAATAGggggtataatttttttttggaataataG
CCTAATGCAATTGGTCAATTGGTCAACAAAGATAAACAAGCATTGACTGT
TAAAAATCATACAAGAAGAAAGCTTGTCTTTTATTATTAAAAGATAAGCT
GAGATctacaaagaaaatattttgtctgtgcatTAAACGATATGATCAAT
GATGTACAAAtattgcctgttttctccttgaatcttgaattctgtttctt
gtATATACTGTAATTGTGGtatatgaaaaaagtaaaagcaaTGTTTATAA
CGCAATTACAGTAAAAAACTAAAACTACTACTACAACCGAGGGTTTTCCT
TGACTTGTCTGACTTTCCCAGACATTGTCAATCGAACAAGTCAAACGCca
aatcaattgaacacaattgaaCGCACTCAAATAAttgtgattcgattg
Run BLAST on NCBI

protein sequence of TCONS_00023177-protein

>TCONS_00023177-protein ID=TCONS_00023177-protein|Name=TCONS_00023177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
QSNHNYLSAFNCVQLIWRLTCSIDNVWESQTSQGKPSVVVVVLVFYCNCV
INIAFTFFIYHNYSIYKKQNSRFKEKTGNICTSLIISFNAQTKYFLCRSQ
LIF
Run BLAST on NCBI

transcript from alignment at sc0000444:161286..162233

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023177 ID=TCONS_00023177|Name=TCONS_00023177|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at sc0000444:161286..162233 (Clytia hemisphaerica)
caatcgaatcacaaTTATTTGAGTGCGttcaattgtgttcaattgatttg
GCGTTTGACTTGTTCGATTGACAATGTCTGGGAAAGTCAGACAAGTCAAG
GAAAACCCTCGGTTGTAGTAGTAGTTTTAGTTTTTTACTGTAATTGCGTT
ATAAACAttgcttttacttttttcatataCCACAATTACAGTATATacaa
gaaacagaattcaagattcaaggagaaaacaggcaataTTTGTACATCAT
TGATCATATCGTTTAatgcacagacaaaatattttctttgtagATCTCAG
CTTATCTTTTAATAATAAAAGACAAGCTTTCTTCTTGTATGATTTTTAAC
AGTCAATGCTTGTTTATCTTTGTTGACCAATTGACCAATTGCATTAGGCt
attattccaaaaaaaaattataccccCTATTGACAAACCTTTTTCACCAA
ACCTACTAGAAATTTTGAATGACAACaaattatcccctggaaatctGGGG
AAAATAATTATTGGTGTCATTTTATAAGGAGAGATCCCTCTGAAAACTCT
GAGAAAATTCAATGAACCCCCCCGGAAAATCTGAAATCTGAACAAAATCC
TCCTGGAAAATATAAAGAGATAGCCCACCCATTTGCTCTACATTAATATA
TCGCTATAGCTAGTCTTGTGCGGTACTTACACACTCGCTTTTATCTGATT
TTCAAATGGCAAGCTCTAAAGCTCTAGAGGAGTGTGCTAATTTAATTACA
ATCAATCTAAATTGAACATTACAGTATGGTAATTGAACTaatcaatcgaa
cataatcgaatctcaattaatggggaacacaatcaaatatttATTACCCA
GAAATCagccgtttgattgagatttgattgcgtttgaaaatcgaattgca
attattccaTCACCTTGGATTACATTCAATTGGTTCAATCGCAATTTT

Coding sequence (CDS) from alignment at sc0000444:161286..162233

>TCONS_00023177 ID=TCONS_00023177|Name=TCONS_00023177|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000444:161286..162233 (Clytia hemisphaerica)
caatcgaatcacaaTTATTTGAGTGCGttcaattgtgttcaattgatttg
GCGTTTGACTTGTTCGATTGACAATGTCTGGGAAAGTCAGACAAGTCAAG
GAAAACCCTCGGTTGTAGTAGTAGTTTTAGTTTTTTACTGTAATTGCGTT
ATAAACAttgcttttacttttttcatataCCACAATTACAGTATATacaa
gaaacagaattcaagattcaaggagaaaacaggcaataTTTGTACATCAT
TGATCATATCGTTTAatgcacagacaaaatattttctttgtagATCTCAG
CTTATCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013032XLOC_013032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023177-exon-sc0000444-1491911889:161286..162233TCONS_00023177-exon-sc0000444-1491911889:161286..162233Clytia hemisphaericaexon
TCONS_00023177-exon-sc0000444-1510915933:161286..162233TCONS_00023177-exon-sc0000444-1510915933:161286..162233Clytia hemisphaericaexon
TCONS_00023177-exon-sc0000444-1575043694:161286..162233TCONS_00023177-exon-sc0000444-1575043694:161286..162233Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023177-proteinTCONS_00023177-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:161286..162233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247215	0.476132	0.831751	0.757455	0.328698	0.106715	0.12591	0.35482	0.247103	0.103298	0.245009	0.622786	0.323253	0.568682	0.199931	0.320778	0.108118	0.116438	0.161795	0	0.85723	1.0638	0.125353	0.257407	0.156965	0.231685	1.18491	0.843043	0.655845	0.660179
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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