TCONS_00023166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023166
Unique NameTCONS_00023166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023166 ID=TCONS_00023166|Name=TCONS_00023166|organism=Clytia hemisphaerica|type=transcript|length=251bp
AACAAAGACGCCAGTATCGCCTTGAGCTAACAAAACAGCATCAGAAGTCG
GCGAGATGAGCACTGTCACGTCTTCATTTTCTCCAACATTCCTCTTCTCA
TCTGGTTCTTCACCATCCTTTTCACCTGGTTTTTCTTCATCCTTGGTTTC
TTCACTTTCCACTCGTTCTTCGTGCTCCTCTTTCTCATCCTCAAGATAAG
GTTTTGTTTCGTCCTCAGTTTCTTTTTCCTCGTTATCCGATACCGGGCTT
A
Run BLAST on NCBI

transcript from alignment at sc0000444:38675..38988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023166 ID=TCONS_00023166|Name=TCONS_00023166|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000444:38675..38988- (Clytia hemisphaerica)
AACAAAGACGCCAGTATCGCCTTGAGCTAACAAAACAGCATCAGAAGTCG
GCGAGATGAGCACTGTCACGTCTTCATTTTCTCCAACATTCCTCTTCTCA
TCTGGTTCTTCACCATCCTTTTCACCTGGTTTTTCTTCATCCTTGGTTTC
TTCACTTTCCACTCGTTCTTCGTGCTCCTCTTTCTCATCCTCAAGATAAG
GTTTCGTTTCGTCCTCAGTTTCTTTTTCCTCGTTATCCGATACCGNCTCA
TCCTCAAGATAAGGTTTTGTTTCGTCCTCAGTTTCTTTTTCCTCGTTATC
CGATACCGGGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013021XLOC_013021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023166-exon-sc0000444-1575043694:38789..38988TCONS_00023166-exon-sc0000444-1575043694:38789..38988Clytia hemisphaericaexon
TCONS_00023166-exon-sc0000444-1575043694:38675..38725TCONS_00023166-exon-sc0000444-1575043694:38675..38725Clytia hemisphaericaexon
TCONS_00023166-exon-sc0000444-1510915933:38789..38988TCONS_00023166-exon-sc0000444-1510915933:38789..38988Clytia hemisphaericaexon
TCONS_00023166-exon-sc0000444-1510915933:38675..38725TCONS_00023166-exon-sc0000444-1510915933:38675..38725Clytia hemisphaericaexon
TCONS_00023166-exon-sc0000444-1491911889:38789..38988TCONS_00023166-exon-sc0000444-1491911889:38789..38988Clytia hemisphaericaexon
TCONS_00023166-exon-sc0000444-1491911889:38675..38725TCONS_00023166-exon-sc0000444-1491911889:38675..38725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:38675..38988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.8482	6.25719	0.854409	7.1964	1.75441	6.46987	0	5.06638	12.9251	11.5776	6.59763	15.7707	4.43966	2.50675	3.64618	6.14569	3.55173	4.10716	9.32732	5.84903	2.78451	1.06762	0	3.34345	1.87147	0	0	0.629082	0	1.70668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top