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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023162 ID=TCONS_00023162|Name=TCONS_00023162|organism=Clytia hemisphaerica|type=transcript|length=2915bp
aaactggtaaaattagcaaattttagctatttttataattcttttaattt
tttggatgacttttctgtaAAATCAAGCCGAAAAGCAACCGAAAAATAGG
tcgtctccatgacaaattgtcccaaaaacttttactaccagggtagtaaa
atacctcttccaagagtctgggtggtggtatgtaaaaattcgtaaaaatc
cttttactactcatatatgtctgagattttactattGACGCCCCCTGATT
TTGCTGCTCTTTAATTTTAAGCCACCATATGCTAAATTTAAATGTTATGA
AAACTCAGAGAAACACAAAACTAATTTCTGATATAATTCTAATACCATTA
TAAACTAACCATGCCAAATATCAATTTGATTGTAATATTGTTATTAGATC
TCTaggtaaacatttttaaaatttctcttCCCTTCCCTATTATCAAGATT
TTGCTATTTTGACCCAGTTtggctaatttttttttacccagCTAACATCT
CTTATCTGTGTGTTTATATCACCCTTtactgttttcttttttacttagta
gtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATAATCACCAT
TGAAGGCCTTGAATCCAATGACACTANACTAACATCTCTTATCTGTGTGC
TTATATCACCCTTtactgttttcttttttacttagtagtcaaaatgaaga
tttatGTAACAACTTTGACAGGTAAAATAATCACCATTGAAGGCCTTGAA
TCCAATGACACTACCGAAATTGTAAGAGAAAAAATACAAGATAAGGAAGG
CATTCCACCTGACCAACAACGTCTGATTTTCAGTGGTAAGCAGATGTTAG
ATGGCTATCCGTTAGCATACTATTTGATCCAGGATACAGCTACAGTGCAT
TTGGTGCTTCGTTTGCGCGGTATGATCTCAAATTTCTCAGGCTATGATAC
TAATGATCCATTGATAGAATATTTGATGAAAGGAGATGTTAATGGCTGTG
ATGTATCTAAAGAActcttaaaagaaaaaagggGCAATTCTAATGGGTCa
gcaaattctgaaattttgctTAACTACACAGGGAATAAGCTATTGAATGA
GAAACAAAGAGCCAGACTGATTGCTGTCGCAGATTATGATTACAATCTCC
AGAAGATTGAAGGAAAATCTGAAATCATCCTACAGGATATTAAAATAGTA
CTACCATCTGGTATTCTCAAAGCGATTTCTCAATCTAATGAtattgaaaa
gcttttaaaaagTCACCATCACTATTCATCAAAAGATGACCAAATGAAAG
TTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGCATGTT
GATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGATGATAA
ATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGGCTTGT
TTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAGAGATG
CATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTGT
TGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGAATTCA
ACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGTCAGCC
AAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAATAATGT
GCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAACCTAAC
TCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCTGGATT
GCGGTTTAAACATATAAGATCGATGATTGCAACTGCACTTTATATTTTAG
TTTTCTTTAGATTTATTTAGCAGTTTTATTAGTTTccacttcatttttat
ttacattCTTATTCTTTcaagtttatatttttacatttttatgaaaGGCC
TACCTANATTTAAAAAGTCACCATCATTATTCATCAAAAGATGACCAAAT
GAAAGTTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGC
ATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGAT
GATAAATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGG
CTTGTTTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAG
AGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTC
ATTGTTGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGA
ATTCAACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGT
CAGCCAAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAAT
AATGTGCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAAC
CTAACTCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCT
GGATTGCGGTTTAAACATATAATGTCGATGATTGCAACTGCACTTTGTAA
TTTTGTTGACTTATATTTTAGTTTTCTTTAGATTTAGCAGTTTTATTAGT
TTccacttcatttttatttacattCTTATTCTTTcaagtttatattttta
catttttatgaaaGGCCTACCTAGCCAAACAGCTATTTTATAttattgat
gattttttgatgattttttaagaGGATTCAtcgttttgtttatattttta
tttatttggataggatacatttttaaaagtttttagatattttgaacTTG
GCTATTTAAAGCATAgtatatattttaattttgttaaAGCATAAGACTTT
ATTTTGAATGTCACACACAGCGTGTTAAATTTAAATTCACCCATTTAACT
CCTACAGAAAGTAAT Run BLAST on NCBI transcript from alignment at sc0000444:186028..188942+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023162 ID=TCONS_00023162|Name=TCONS_00023162|organism=Clytia hemisphaerica|type=transcript|length=2915bp|location=Sequence derived from alignment at sc0000444:186028..188942+ (Clytia hemisphaerica)
aaactggtaaaattagcaaattttagctatttttataattcttttaattt
tttggatgacttttctgtaAAATCAAGCCGAAAAGCAACCGAAAAATAGG
tcgtctccatgacaaattgtcccaaaaacttttactaccagggtagtaaa
atacctcttccaagagtctgggtggtggtatgtaaaaattcgtaaaaatc
cttttactactcatatatgtctgagattttactattGACGCCCCCTGATT
TTGCTGCTCTTTAATTTTAAGCCACCATATGCTAAATTTAAATGTTATGA
AAACTCAGAGAAACACAAAACTAATTTCTGATATAATTCTAATACCATTA
TAAACTAACCATGCCAAATATCAATTTGATTGTAATATTGTTATTAGATC
TCTaggtaaacatttttaaaatttctcttCCCTTCCCTATTATCAAGATT
TTGCTATTTTGACCCAGTTtggctaatttttttttacccagCTAACATCT
CTTATCTGTGTGTTTATATCACCCTTtactgttttcttttttacttagta
gtcaaaatgaagatttatGTAACAACTTTGACAGGTAAAATAATCACCAT
TGAAGGCCTTGAATCCAATGACACTANACTAACATCTCTTATCTGTGTGC
TTATATCACCCTTtactgttttcttttttacttagtagtcaaaatgaaga
tttatGTAACAACTTTGACAGGTAAAATAATCACCATTGAAGGCCTTGAA
TCCAATGACACTACCGAAATTGTAAGAGAAAAAATACAAGATAAGGAAGG
CATTCCACCTGACCAACAACGTCTGATTTTCAGTGGTAAGCAGATGTTAG
ATGGCTATCCGTTAGCATACTATTTGATCCAGGATACAGCTACAGTGCAT
TTGGTGCTTCGTTTGCGCGGTATGATCTCAAATTTCTCAGGCTATGATAC
TAATGATCCATTGATAGAATATTTGATGAAAGGAGATGTTAATGGCTGTG
ATGTATCTAAAGAActcttaaaagaaaaaagggGCAATTCTAATGGGTCa
gcaaattctgaaattttgctTAACTACACAGGGAATAAGCTATTGAATGA
GAAACAAAGAGCCAGACTGATTGCTGTCGCAGATTATGATTACAATCTCC
AGAAGATTGAAGGAAAATCTGAAATCATCCTACAGGATATTAAAATAGTA
CTACCATCTGGTATTCTCAAAGCGATTTCTCAATCTAATGAtattgaaaa
gcttttaaaaagTCACCATCACTATTCATCAAAAGATGACCAAATGAAAG
TTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGCATGTT
GATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGATGATAA
ATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGGCTTGT
TTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAGAGATG
CATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTCATTGT
TGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGAATTCA
ACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGTCAGCC
AAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAATAATGT
GCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAACCTAAC
TCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCTGGATT
GCGGTTTAAACATATAAGATCGATGATTGCAACTGCACTTTATATTTTAG
TTTTCTTTAGATTTATTTAGCAGTTTTATTAGTTTccacttcatttttat
ttacattCTTATTCTTTcaagtttatatttttacatttttatgaaaGGCC
TACCTANATTTAAAAAGTCACCATCATTATTCATCAAAAGATGACCAAAT
GAAAGTTGTATTAAGAAGAACTGCCCCAACTCTAGGTTGTCTTCCTTGGC
ATGTTGATGGGGTTTATTCTTCTTGTGTCGTCCAGTACACATTGAATGAT
GATAAATCCTATACTGGAGGTCGTTTATGTTTTTTCACAGATGACATTGG
CTTGTTTGTGCCTCAGAGACCAGCTGGTACATTATCTGTTCATTATAAAG
AGATGCATGGCGTGTCAAAGCTTCTGAGTGGTGTACGTTATGTTTTGTTC
ATTGTTGACATCGCAAATGGCTTGGGTGGAGCTAAAGAGAATATTATAGA
ATTCAACCAAAAGATAATGGATCATATGAATTCTGGAATCAATCTCATGT
CAGCCAAGAACAAGAATGTCATTGAAGTGAAAAGCGATAGTGAGGATAAT
AATGTGCAAGCCCTATTCACAACTAGAGCTGCTAAAAGAGCCAGGAAAAC
CTAACTCTTCCAACTTTATATTGCACCTTACTTGTCTGCTATTATCAGCT
GGATTGCGGTTTAAACATATAATGTCGATGATTGCAACTGCACTTTGTAA
TTTTGTTGACTTATATTTTAGTTTTCTTTAGATTTAGCAGTTTTATTAGT
TTccacttcatttttatttacattCTTATTCTTTcaagtttatattttta
catttttatgaaaGGCCTACCTAGCCAAACAGCTATTTTATAttattgat
gattttttgatgattttttaagaGGATTCAtcgttttgtttatattttta
tttatttggataggatacatttttaaaagtttttagatattttgaacTTG
GCTATTTAAAGCATAgtatatattttaattttgttaaAGCATAAGACTTT
ATTTTGAATGTCACACACAGCGTGTTAAATTTAAATTCACCCATTTAACT
CCTACAGAAAGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023162-exon-sc0000444-1491911889:186028..188942 | TCONS_00023162-exon-sc0000444-1491911889:186028..188942 | Clytia hemisphaerica | exon |
| TCONS_00023162-exon-sc0000444-1510915933:186028..188942 | TCONS_00023162-exon-sc0000444-1510915933:186028..188942 | Clytia hemisphaerica | exon |
| TCONS_00023162-exon-sc0000444-1575043694:186028..188942 | TCONS_00023162-exon-sc0000444-1575043694:186028..188942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:186028..188942 + |
Blast
BLAST of TCONS_00023162 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 2.050e-24 Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 694 MKIYVTTLTGKIITIEGLESNDTTEIVREKIQDKEGIPPDQQRLIFSGKQMLDGYPLAYYLIQDTATVHLVLRLRGMI 927
M+I+V TLTGK IT+E +E +DT E V+ KIQDKEGIPPDQQRLIF+GKQ+ DG L+ Y IQ +T+HLVLRLRG I
Sbjct: 1 MQIFVKTLTGKTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
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