TCONS_00023129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023129
Unique NameTCONS_00023129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023129 ID=TCONS_00023129|Name=TCONS_00023129|organism=Clytia hemisphaerica|type=transcript|length=350bp
atttgatacaaaaaaacTAGTTTGACaagatataaaaacaatgaatatAT
AACACTCTTGAGAAATCAAATGATGATTAAATAAAATGCGTGTGAAATAA
TTAATTACTAGATAATGACTAAATGACAAAATGATAATAACTGACaaagt
atttgaaataattgatAACATAGATAAATGACTTTAAAACATAGAACAAA
ACAAACGACGCATGAAACACGAGAATGCACAAGAGAGAAGAGACGCTGAA
AAAGAAAGCACTGGGAAAACAAAAGACGCTGGGGACAAAAAGACACTGAA
AATTGaactataaaatatttttgcttttttaaatatactaaaaatttgAT
Run BLAST on NCBI

transcript from alignment at sc0000443:39644..39993

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023129 ID=TCONS_00023129|Name=TCONS_00023129|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at sc0000443:39644..39993 (Clytia hemisphaerica)
ATcaaatttttagtatatttaaaaaagcaaaaatattttatagttCAATT
TTCAGTGTCTTTTTGTCCCCAGCGTCTTTTGTTTTCCCAGTGCTTTCTTT
TTCAGCGTCTCTTCTCTCTTGTGCATTCTCGTGTTTCATGCGTCGTTTGT
TTTGTTCTATGTTTTAAAGTCATTTATCTATGTTatcaattatttcaaat
actttGTCAGTTATTATCATTTTGTCATTTAGTCATTATCTAGTAATTAA
TTATTTCACACGCATTTTATTTAATCATCATTTGATTTCTCAAGAGTGTT
ATatattcattgtttttatatcttGTCAAACTAgtttttttgtatcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012999XLOC_012999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023129-exon-sc0000443-1491911889:39644..39993TCONS_00023129-exon-sc0000443-1491911889:39644..39993Clytia hemisphaericaexon
TCONS_00023129-exon-sc0000443-1510915933:39644..39993TCONS_00023129-exon-sc0000443-1510915933:39644..39993Clytia hemisphaericaexon
TCONS_00023129-exon-sc0000443-1575043694:39644..39993TCONS_00023129-exon-sc0000443-1575043694:39644..39993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:39644..39993 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44506	0.547705	0.569782	0.278722	0.339317	0.536265	0.323491	0	0.424062	0.371054	0.25492	0.167574	0.669364	0.695142	0	0.547942	0.188886	0.250214	0.802416	0.27989	1.20719	0.355984	0.576993	1.28864	1.08059	1.2055	1.2613	1.50834	2.51346	1.42267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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