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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023128 ID=TCONS_00023128|Name=TCONS_00023128|organism=Clytia hemisphaerica|type=transcript|length=1575bp
TGCATCAATAATGCCGGCCGGGGATCGTTCAATCATATGCTTATGGTTTA
ACAAAAGATTATGAGATCTAGCTTAAATAGTGTTGAAAGtatgaaataaa
aagtacatAAATTATCAAAACTTCAAGTTAAACGACAAACACAAATAACC
TAAACTTGCTTGTATGtgcaaaagaaaatcaaaaaatgagtTAATTATAT
TCCacttaattaaattaaaatttccacCGATAGCTTTTCAAAACTCCAAC
TGGTGTATATTTCATTTAATTCTTTCTGTCACGTGTCCTGTTTCATGGCC
CCAATTAATAAACTATACAAAAATCTTATTATTCATtcttgaaaataaga
aacatgatgATCGAtcttttttcaccaaaataatgatttttggCAACACC
AGGATAACCCCATAGTTCGAACATTTCGTATTCTTCAGTATAGTTACCAT
TATTCTCAATAcacatttctttttgtttcggGTGTAACAAAAAcgatttt
gcatttttcaattcTCCTTTATTATCATGATTCACAATGAGAGTTTGAGG
TCCGTCGCCACAATCAACGTTTCTCCTTTTGGTAAGAAGAACAAGAGTGG
CGTAATTTGTCGCAGGCATTTCCTTCTTtatgaaaattaatttctttccT
TCTGAATTCATGTTTTCTTGTACATTATTTTCTAACAAATCATAGATAGC
TTCATGCCACTTCTGATAAGATGTGTCAAGAtttgaaacatattttttgg
CAAAGAAAAATTCATTGACACCCCAAATCATTTTATCTTCCTTTGTAGCA
ACAATTGATTTTTCTGTCTGTTTCATCGCCCCTGCCGTATTTTCTGgttt
gaaatcattttgagaTTGCGTTGCGTTATtgcttttcaaaatttcaattt
cgtgACGAAGTGCTTGGATCGCCAGTTCTTTCTCTCGTTCCATCTGTTCG
AGTTTGATCTTATTGGTATTCTCCAAATCCTTGGCTTTCAGCTTGAATTC
GTTTTCTTTGGCAGCAAGTTTGGTCTGGTACTCGTGCTCTTTTGCCAGAG
TTACTTTCTCCATTTCATTGATTTTGGTTTTGCATTCGTTTTATCCTTGG
CAGTAATGTCCTTGTCTTTTAAAATCTCTAAGTCCTTCATTTTAAGGTTG
AACTCGTTTTCCCTGGCAGCCATCTTTTTGTCTTTCTCagccagtttgtt
ttgaaactcTTTGTGCTTTTTCAGCATTTCTTTCTCCATTTCGCGATCAA
CCACACCGCCCTTAGCCTCCATCTCATGGGCGGTCTTCAACTTGACCAGC
TCAAGTTCATGACTTAACGATTGATTGTCTTTTTCAAGCTGCAAAATCTT
CATCTTCTGCTCTTTATCCTGTTTGGACATTTCTTTCTCCAGCTCCAGGG
TTTTGATACGATTTTCAAATGTCAATTTTTGAATCTGCTTCTCGTGTTCC
TCTTTAAGTTTTTCAATCTCGATACTATCAGTATTCCTGGCGACATTTCT
TCCAGCAGCACTGTGTGCCAAGTTGCGTTCATCGCCATGTGCAGAatcca
ttttatttttgttttgacctTATTA Run BLAST on NCBI protein sequence of TCONS_00023128-protein >TCONS_00023128-protein ID=TCONS_00023128-protein|Name=TCONS_00023128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MEKVTLAKEHEYQTKLAAKENEFKLKAKDLENTNKIKLEQMEREKELAIQ
ALRHEIEILKSNNATQSQNDFKPENTAGAMKQTEKSIVATKEDKMIWGVN
EFFFAKKYVSNLDTSYQKWHEAIYDLLENNVQENMNSEGKKLIFIKKEMP
ATNYATLVLLTKRRNVDCGDGPQTLIVNHDNKGELKNAKSFLLHPKQKEM
CIENNGNYTEEYEMFELWGYPGVAKNHYFGEKRSIIMFLIFKNE Run BLAST on NCBI transcript from alignment at sc0000443:24226..25800 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023128 ID=TCONS_00023128|Name=TCONS_00023128|organism=Clytia hemisphaerica|type=transcript|length=1575bp|location=Sequence derived from alignment at sc0000443:24226..25800 (Clytia hemisphaerica)
TAATAaggtcaaaacaaaaataaaatggatTCTGCACATGGCGATGAACG
CAACTTGGCACACAGTGCTGCTGGAAGAAATGTCGCCAGGAATACTGATA
GTATCGAGATTGAAAAACTTAAAGAGGAACACGAGAAGCAGATTCAAAAA
TTGACATTTGAAAATCGTATCAAAACCCTGGAGCTGGAGAAAGAAATGTC
CAAACAGGATAAAGAGCAGAAGATGAAGATTTTGCAGCTTGAAAAAGACA
ATCAATCGTTAAGTCATGAACTTGAGCTGGTCAAGTTGAAGACCGCCCAT
GAGATGGAGGCTAAGGGCGGTGTGGTTGATCGCGAAATGGAGAAAGAAAT
GCTGAAAAAGCACAAAgagtttcaaaacaaactggctGAGAAAGACAAAA
AGATGGCTGCCAGGGAAAACGAGTTCAACCTTAAAATGAAGGACTTAGAG
ATTTTAAAAGACAAGGACATTACTGCCAAGGATAAAACGAATGCAAAACC
AAAATCAATGAAATGGAGAAAGTAACTCTGGCAAAAGAGCACGAGTACCA
GACCAAACTTGCTGCCAAAGAAAACGAATTCAAGCTGAAAGCCAAGGATT
TGGAGAATACCAATAAGATCAAACTCGAACAGATGGAACGAGAGAAAGAA
CTGGCGATCCAAGCACTTCGTcacgaaattgaaattttgaaaagcaATAA
CGCAACGCAAtctcaaaatgatttcaaacCAGAAAATACGGCAGGGGCGA
TGAAACAGACAGAAAAATCAATTGTTGCTACAAAGGAAGATAAAATGATT
TGGGGTGTCAATGAATTTTTCTTTGccaaaaaatatgtttcaaaTCTTGA
CACATCTTATCAGAAGTGGCATGAAGCTATCTATGATTTGTTAGAAAATA
ATGTACAAGAAAACATGAATTCAGAAggaaagaaattaattttcataAAG
AAGGAAATGCCTGCGACAAATTACGCCACTCTTGTTCTTCTTACCAAAAG
GAGAAACGTTGATTGTGGCGACGGACCTCAAACTCTCATTGTGAATCATG
ATAATAAAGGAgaattgaaaaatgcaaaatcgTTTTTGTTACACccgaaa
caaaaagaaatgtgTATTGAGAATAATGGTAACTATACTGAAGAATACGA
AATGTTCGAACTATGGGGTTATCCTGGTGTTGccaaaaatcattattttg
gtgaaaaaagaTCGATcatcatgtttcttattttcaagaATGAATAATAA
GATTTTTGTATAGTTTATTAATTGGGGCCATGAAACAGGACACGTGACAG
AAAGAATTAAATGAAATATACACCAGTTGGAGTTTTGAAAAGCTATCGgt
ggaaattttaatttaattaagtGGAATATAATTAactcattttttgattt
tcttttgcaCATACAAGCAAGTTTAGGTTATTTGTGTTTGTCGTTTAACT
TGAAGTTTTGATAATTTatgtactttttatttcataCTTTCAACACTATT
TAAGCTAGATCTCATAATCTTTTGTTAAACCATAAGCATATGATTGAACG
ATCCCCGGCCGGCATTATTGATGCA Coding sequence (CDS) from alignment at sc0000443:24226..25800 >TCONS_00023128 ID=TCONS_00023128|Name=TCONS_00023128|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000443:24226..25800 (Clytia hemisphaerica)
ATGGAGAAAGTAACTCTGGCAAAAGAGCACGAGTACCAGACCAAACTTGC
TGCCAAAGAAAACGAATTCAAGCTGAAAGCCAAGGATTTGGAGAATACCA
ATAAGATCAAACTCGAACAGATGGAACGAGAGAAAGAACTGGCGATCCAA
GCACTTCGTcacgaaattgaaattttgaaaagcaATAACGCAACGCAAtc
tcaaaatgatttcaaacCAGAAAATACGGCAGGGGCGATGAAACAGACAG
AAAAATCAATTGTTGCTACAAAGGAAGATAAAATGATTTGGGGTGTCAAT
GAATTTTTCTTTGccaaaaaatatgtttcaaaTCTTGACACATCTTATCA
GAAGTGGCATGAAGCTATCTATGATTTGTTAGAAAATAATGTACAAGAAA
ACATGAATTCAGAAggaaagaaattaattttcataAAGAAGGAAATGCCT
GCGACAAATTACGCCACTCTTGTTCTTCTTACCAAAAGGAGAAACGTTGA
TTGTGGCGACGGACCTCAAACTCTCATTGTGAATCATGATAATAAAGGAg
aattgaaaaatgcaaaatcgTTTTTGTTACACccgaaacaaaaagaaatg
tgTATTGAGAATAATGGTAACTATACTGAAGAATACGAAATGTTCGAACT
ATGGGGTTATCCTGGTGTTGccaaaaatcattattttggtgaaaaaagaT
CGATcatcatgtttcttattttcaagaATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023128-exon-sc0000443-1491911889:24226..25800 | TCONS_00023128-exon-sc0000443-1491911889:24226..25800 | Clytia hemisphaerica | exon |
| TCONS_00023128-exon-sc0000443-1510915933:24226..25800 | TCONS_00023128-exon-sc0000443-1510915933:24226..25800 | Clytia hemisphaerica | exon |
| TCONS_00023128-exon-sc0000443-1575043694:24226..25800 | TCONS_00023128-exon-sc0000443-1575043694:24226..25800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000443 | supercontig | sc0000443:24226..25800 . |
Blast
The following BLAST results are available for this feature:
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