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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023061 ID=TCONS_00023061|Name=TCONS_00023061|organism=Clytia hemisphaerica|type=transcript|length=2518bpRun BLAST on NCBI protein sequence of TCONS_00023061-protein >TCONS_00023061-protein ID=TCONS_00023061-protein|Name=TCONS_00023061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=784bp MEKHNEMGINQEISSVHPSTQPIALSKYGSPSSIAFADKSLDISNLINVSRun BLAST on NCBI transcript from alignment at sc0000439:98937..116556- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023061 ID=TCONS_00023061|Name=TCONS_00023061|organism=Clytia hemisphaerica|type=transcript|length=17620bp|location=Sequence derived from alignment at sc0000439:98937..116556- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000439:98937..116556- >TCONS_00023061 ID=TCONS_00023061|Name=TCONS_00023061|organism=Clytia hemisphaerica|type=CDS|length=42336bp|location=Sequence derived from alignment at sc0000439:98937..116556- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023061 vs. Swiss-Prot (Human)
Match: INO80 (DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0 Identity = 354/551 (64.25%), Postives = 431/551 (78.22%), Query Frame = 2
Query: 881 MTYKRKKVWHIISKKEIPKMCRNKTNSRGTSLATLKKVAQGCQREKRKEAARSQKISKEVFPRAKRMAREMLLYWKKFDXXXXXXXXXXXXXXXXXXXXXXXMREMKRQQRKLNFLITQTELYAHFMSRKMKGNQDSSAQQTDILKKLDDDSNLSNRSVQGGILVNHNADDYDPEEMKNRALINAQNAVLSQEQKINGFD-------SGSTKAA--SQTSFDSTFSLANPTMNSKKQLPQPKIFEGKLKTYQLKGMNWLINLYEQGINGILADEMGLGKTVQSISLLAYLAEAHDIWGPFVIVSPASTLHNWQQEFAKFLPQFKVLPYWGDPSDRKSLRKFWNQTSSYLTDSEKAPFHVLITSYQLIVQDVKYFQRIKWQYLILDEAHAIKSSTSLRWKILLGYNCRNRLLLTGTPIQNTMAELWALLHFIMPMLFDNHEEFNEWFSKDIENHASEKKPNLDQNQLSRLHMILKPFMLRRVKKDVENELSEKIEIKVMCQMSSRQKLFYQAVKNKIMFEDLLQS---TTSNSEKSTSLLMNLVMQFRKVMN 2497
+ +R+KVW I KKE+PK + K ++R L +K+A C +E R+ A ++QK KE PRA+R+ +EMLLYWKK++KVEKEHRK+AEKEA EQRK DEEMRE KRQQRKLNFLITQTELYAHFMSRK D Q +IL+KL+D S + GG++VN +DYD K +AL NA+NA + + FD + + +AA S T F ++SLANP++ + + +PQP IF GKLK YQLKGMNWL NLYEQGINGILADEMGLGKTVQSI+LLA+LAE +IWGPF+I+SPASTL+NW QEF +F+P+FKVLPYWG+P DRK +R+FW+Q + Y D APFHV+ITSYQL+VQDVKYFQR+KWQY++LDEA A+KSS+S+RWKILL + CRNRLLLTGTPIQNTMAELWALLHFIMP LFD+HEEFNEWFSKDIE+HA E K +D+NQLSRLHMILKPFMLRR+KKDVENELS+KIEI + CQ++SRQKL YQA+KNKI EDLLQS +T ++ +TS LMNLVMQFRKV N
Sbjct: 273 LNARRRKVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHD--GIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQD---APFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCN 817 The following BLAST results are available for this feature:
BLAST of TCONS_00023061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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