TCONS_00022777 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022777
Unique Name	TCONS_00022777
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1061

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000432:154862..157298-

transcript sequence

>TCONS_00022777 ID=TCONS_00022777|Name=TCONS_00022777|organism=Clytia hemisphaerica|type=transcript|length=1061bp
caggaaaataaaaaaatgaaacaatattaATACAACACAATACACACGAT
GAATACTGGGGTGCCAGCTACAGAAGAACCGACTTTTCCCAATGTTGCGT
TTGTCGAAAACAAGATAGGAGCTGGAGCTAATGATGAAAAATCAGAACAT
GTGTTAACATCAACATACAGCAAGTCTGACAAAACATTAGTCAAGCAGTT
ACCACAACCCAGCCAGCCTCAAAACAAGAGGAAACCGTCTCCCTCTAGTA
GCGTTCAGGAGCCAgtggtgaaaaagaaaatctccTCAGAGGAGAATGAT
GAACGAGATGTTGGATTGCAACAGGATGAGGGTCAATCGCTAGTTTATGC
TTGTATTAAAAGAATCCTCCCGACTGAGAAAGAGaAGGTGCAACTGAAAA
CCAATGATTGGGTTGAAACCCAAGAGACAGTCGAACATGTTATACATTGC
TCCAAAAAAGACGGCCATCAGTGCAATAGAAAGAACTGTAAAAACATGAA
AATTGCCATCGAATCAAGTTGTCAAGTCATCAGTCCTTCAGAGGTAGAGA
ATTTGCTTTACCCTCCCTTAACCTctcaaattttcattcattcatctaAA
ATAATATGCGAGTCTTTAGGTTATTTGAGTTTAGAAACACTCGTCACGTC
CGGGAtaattctttaataatttaaaaattattttgaagaaacaAAACACA
TCGACTCGACCTTTATGTAGGTGGACAAACATTAACAGAAACCTTTCCTT
AGTATCAGGGCAGCAGATCACTGAATATCTCTTAGCTTAATTAACTCCTT
CTCTCCGGGATAAacgcactgctcttgttttgaatatagaAGTTTTCTAC
GGGGAAaaaaggagcttattttagacagtgtcttcatgctgagtcagata
aattaaagctactttttttATGCAAcaatatcctgcaaacaagtgaaaga
tcgaaagttgtttcgagatgtgacctcacatactattgcttttgtaaaca
aaaaaataacaaagttgatttcgagcaaatttacaatcgaatgttttgat
tataagataaa

Run BLAST on NCBI

transcript from alignment at sc0000432:154862..157298-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022777 ID=TCONS_00022777|Name=TCONS_00022777|organism=Clytia hemisphaerica|type=transcript|length=2437bp|location=Sequence derived from alignment at sc0000432:154862..157298- (Clytia hemisphaerica)
CAGGAAAATAAAAAAATGAAACAATATTAATACAACACAATACACACGAT
GAATACTGGGGTGCCAGCTACAGAAGAACCGACTTTTCCCAATGTTGCGT
TTGTCGAAAACAAGATAGGAGGTAGGTTTTACTTTAACTAAGAAATTTAG
ATGGTACTACTATGCAACCCTGACGGATTACTAAAAAGCAATTTGTATTG
TTTGTGATATTTCGATAATGAAGTTATTGAGATGTTAGAGCTTAAAGTAC
CAAAGAATTTGTTGAAAGATGCTGACTCAAATCTCGGCTAATACACATCA
AAACAGATCAAAAAAGGAAGAAAAAATACCATATCAAGATAATACTATAC
ATAATCTGCTTTTAAATGTTTAGCACTCAAATCTATTATAAATCTTTACG
TTTTTTTAGCTGGAGCTAATGATGAAAAATCAGAACATGTGTTAACATCA
ACATACAGCAAGTCTGACAAAACATTAGTCAAGCAGTTACCACAACCCAG
CCAGCCTCAAAACAAGAGGAAACCGTCTCCCTCTAGTAGCGTTCAGGAGC
CAGTGGTGAAAAAGAAAATCTCCTCAGAGGAGAATGATGAACGAGATGTT
GGATTGCAACAGGATGAGGGTCAATCGCTAGTTTATGCTTGTATTGTAAG
TTTGCGTTTCTAGAAAAAGAATTTACCCCATTGCTGATGAGAGCATAATT
TTCCGTACATGCCATGGGAGGGGGTGTTACGCTCATAAAAGCTGGAAATG
TACCATTTAGGAGGTGGTTCCATATAATCGACTGTGGCGAATTAAGGAAT
ATGTCCTGATTTAGAATCCACCCCGTTAAATGGAATATTTTGACATGGAT
TTTAAATTTCCTCGATCAGGTTTTTTTTAAACGCAAGTGAACTACTATCA
GCTAAGGTAAAAGTCAAGGGGGTCTTGGTCGGAAGAATGGTTGATGGGAT
CAGCGAGGTTAAATCCATTCTGCCGTACGCTGAAAAAATCGTGTTTGGAG
AGTATCAAGTTAAAACCCAAAGGGTGTCAAAAAGTAAAAATTTCAGGTAT
CTTAAACAGCCTCATACTAATTCTTTCAATAATAGATCAAACCCAGCGAT
ATAGATTTTTGTTTTTAAGGTTTTGAAAGAATGTTTTTTTTTCTCGTTTT
AGAAAAGAATCCTCCCGACTGAGAAAGAGGTAAACTACTGGTTGGATCGA
AAAACAACACTTTCTCTACACGTAGTGTTCAAACGAGCGGGCTAGTGAAA
AATTCGTTGTCTTAATACAACTTTTTACGAATTCTTATGTAAGAGAAATT
GTGTCGAATCAAATAACATTTACCTTTTTAAGATGATACGCTTTTTAATA
ATACTTAATAAAGAATTTTTTTTTCTTTAATAGAAGGTGCAACTGAAAAC
CAATGATTGGGTTGAAACCCAAGAGACAGTCGAACATGTTATACATTGCT
CCAAAAAAGACGGCCATCAGTGCAATAGAAAGAACTGTAAAAACATGAAG
TAAGACTTTGTCATGCCACATGCTAAGACAAGGCTGTAAACCAAGGCTAT
AAACCAAAGTGTGACTTTATTGTAGCCTCTATGGCAATGCATTTCCGGGA
TCCCCAGTTCAAATAGGATCAAGGTCACATTTAAATGGTTTTTTTGGGTG
TAGATTCCGAAAAAATAGGTCTCAAAGTAATAATATTATATAATATATTG
AGAAGATAAACTTTCGACGTTTCGAATGGAATTGACTGGTCGTCATTGTT
TTAAAGGAATTAATTAATCAATTAAATTAATTAATGCAAATCGCTGAATT
TTTCATTCCTGGATGCTAATAGCTTCATTCATGATTCTGACCTTCTATTT
TTCAAACTACTAATTTCTCTTTACAGAATTGCCATCGAATCAAGTTGTCA
AGTCATCAGTCCTTCAGAGGTAGAGAATTTGCTTTACCCTCCCTTAACCT
CTCAAATTTTCATTCATTCATCTAAAATAATATGCGAGTCTTTAGGTTAT
TTGAGTTTAGAAACACTCGTCACGTCCGGGATAATTCTTTAATAATTTAA
AAATTATTTTGAAGAAACAAAACACATCGACTCGACCTTTATGTAGGTGG
ACAAACATTAACAGAAACCTTTCCTTAGTATCAGGGCAGCAGATCACTGA
ATATCTCTTAGCTTAATTAACTCCTTCTCTCCGGGATAAACGCACTGCTC
TTGTTTTGAATATAGAAGTTTTCTACGGGGAAAAAAGGAGCTTATTTTAG
ACAGTGTCTTCATGCTGAGTCAGATAAATTAAAGCTACTTTTTTTATGCA
ACAATATCCTGCAAACAAGTGAAAGATCGAAAGTTGTTTCGAGATGTGAC
CTCACATACTATTGCTTTTGTAAACAAAAAAATAACAAAGTTGATTTCGA
GCAAATTTACAATCGAATGTTTTGATTATAAGATAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012791	XLOC_012791	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000432	supercontig	sc0000432:154862..157298 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45468	2.16538	2.23739	2.54408	3.22107	1.39029	4.13958	4.5402	7.76125	3.12162	10.4665	9.13361	6.76613	8.59373	5.89987	4.23101	5.67075	5.98138	5.32223	5.0347	8.30143	7.42178	4.01221	5.16421	3.00946	4.2571	3.78452	3.32774	3.2125	1.70721

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00022777 vs. Swiss-Prot (Human)

BLAST of TCONS_00022777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00022777 (transcript) - C. hemisphaerica