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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022768 ID=TCONS_00022768|Name=TCONS_00022768|organism=Clytia hemisphaerica|type=transcript|length=1810bp
CTGGGAACTGAGTTGGTAAAGCAAGAAACTTTTGTGCAAAGCATTCTGGT
CCTGTTTTGGTGTcaatgaaacgaaaaaaaaaacagagcggataaaaatt
tttcgatttctaaaatggtagacCTTAGCTACGCACATGCTCAAATGAGT
AAGACGTCGTTTTAGGCCACCTTCTAAAGAATATTGTTGGGTTGTTACAA
AGTGAATATCGAATTCAATTCAATATGGGAAGGAATGATACTTGTATTAT
ACCTGGGTGTTTGAACACAAGAAGGAAGCCTGAAAGGTTGATAATAATGA
ACCACGTTGGAATCCTACGATGGCACAGTCCAAAAACAACACGTGATCTC
CATGCTTGGGAGAAACAATTGAACCGTGCAATTTCAATGAGTACTAAAGT
CTGTTCGAACCATTTCACAAGTGGGTATTGTTCTGATGTGTGTCGCATAC
CAACATTATACTTGAACGGGTATGAGAAAGATGAATATAAGCTTTTGTAT
GGGGAAGACAATTTCCAAGGAGGTAAATTATGCACGCGATATGAAATAGA
AGAAAATGATGATAATGAAGACCCTTTTGAAGTTATAACACCCTGTTTAC
ATGATCACGATTATTTAGGTTTCTCATCACAAACTGATTTCCATTATCTG
AATCTTTCTTCAAACCAAATGGAGAAAGTGGAGACGATGAGTGACAGGGA
AAAAGAGATCATGGAATTCTTGAATAAACAATTGATAGCACGTtcatttg
ttacaacttgattTGAGGTATGGCAAATTAAAAATTCTTCAGATAcacat
ctttttttataagaacgtccaaaaCCTTTTAACGCCTTCgtatattctta
actttttgagttttagtgTTCTAAAAATCTTCTTACTTTCACCAGTTTTT
TAGTCCTATTGTgccattttttaagaaattgggAGTTTTAGAgcctacaa
agccttaaaatgttctttaaactTGTTCTCTatgttttggccatcgaagc
cttcaTGTTCAcccagtttgttcttataaaaaagtgtgtatttcAAAGAC
TTGTATTTGAAAGAGAGCAGtgtttcttgatatttttgttgCTTCACATC
GCTGCAGAATGGATGTGGTTTTCATCCaggagattattttttgtttccat
ttttGGGTCGTGTTTTCATTTTTCCCTTAGGTTTTTTAGCTAGAACTGAT
TGATTCACATTTTAAAACCATCCTTGGAATGGTTTTTAATAGTCATATTc
tcaaataaagtgaaaactaaaatatttgttCATATTTCTTGGTTTTTTCA
AAAGTGCCAATAATAAATTCTTTCCATACAACAAATAATGACTGATTATT
GATTAATGTCATATTCAAGAATTTAAAAGTcgggatatccaggctgtaaa
caattttaatttttgacgtTTCTGGTTTACTGCCTGGCTTTTTAAAGTGA
TTTTCTGTACAAAGTAAAAAGGCAACGCACTTGTACTTTGTCAATTCAAA
ATTGTGCGgaacaaagaaaaattgctGTATGTAGCAGaaacatcaaaata
gaaaaatgattTACATCTTGGTTGCCCAGGCTAGAATTTTGGGATTATTT
TGAGTCCCTTTTACAAACGTAGTCAAACTATATTTTGTACATAAtgtaaa
tatatttcaaaacatACGAGTGGTCAATATTTTATCACATTTTATTTACT
AAACAAGCTTGGTCGTCTTGAAAGAATACTGTATTTGACAATCAtatctt
ttctattgtaaagaACAAAGACTTATTTATGTATATAAATTTATAAAACA
CTtgcaaaca Run BLAST on NCBI protein sequence of TCONS_00022768-protein >TCONS_00022768-protein ID=TCONS_00022768-protein|Name=TCONS_00022768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MGRNDTCIIPGCLNTRRKPERLIIMNHVGILRWHSPKTTRDLHAWEKQLN
RAISMSTKVCSNHFTSGYCSDVCRIPTLYLNGYEKDEYKLLYGEDNFQGG
KLCTRYEIEENDDNEDPFEVITPCLHDHDYLGFSSQTDFHYLNLSSNQME
KVETMSDREKEIMEFLNKQLIARSFVTT Run BLAST on NCBI transcript from alignment at sc0000432:168385..174456+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022768 ID=TCONS_00022768|Name=TCONS_00022768|organism=Clytia hemisphaerica|type=transcript|length=6072bp|location=Sequence derived from alignment at sc0000432:168385..174456+ (Clytia hemisphaerica)
CTGGGAACTGAGTTGGTAAAGCAAGAAACTTTTGTGCAAAGCATTCTGGT
CCTGTTTTGGTGTcaatgaaacgaaaaaaaaaacagagcggataaaaatt
tttcgatttctaaaatggtagacCTTAGCTACGCACATGCTCAAATGAGT
AAGACGTCGTTTTAGGCCACCTTCTAAAGAATATTGTTGGGTTGTTACAA
AGTGAATATCGAATTCAATTCAATATGGGAAGGAATGATACTTGTATTAT
ACCTGGGTGTTTGAACACAAGAAGGAAGCCTGAAAGGTATTTGTCTTTAT
ACTACTTTTAAAAAGTCTTTTATAAATGCCAACTTAAAATTAGTAAtatc
gaaaagtgtaaaaaagatAGACGTTCATGCATATATTTACtataataaat
caaaatttcagaaaaaattgcATAACAAGTATCAAAGTTAATTTGAATGG
AAGCTCTAAATTCTAACAAATAGTTTATCTTTTTCGgaaccaaaagaaaa
aaatcaggactattttggcaaaaacacgacaccctgcctatgccccggac
agtccggggcaaatgtctggggtctgaaaaaaataactttttccccggac
ctacgtccggggctccaatttttgcgccataNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCGGACGTATATCGCCGAGCACACTTTAAACCCC
CGGACATTTTATCCAGGTCTAAAACTCACCCCCTCACGCCCAAATTCCGA
GATTATGtatgtgtttttcagcgacggagacggtaaggttctaattatAA
AAGAACTAACTTTACTTACCTTTCTCTGTCTGATCAGgatccatttttca
gctttcggttagattttagaatttgattgCTGAACAAACCACGCTTGAGA
TTTAAGGTTCAAATACAGGCCTCACACACGAAACGCCAAAATCAGcacat
tacaagatcttttggaagacggcgtttgtccatggaagaatatttcaatg
aattagaaaaaagcccgcgcggtcatcgattctataaaaagcgaccgcgc
gggctgtctggggcgtccggggtagtctctcaaaaacaaataatacggac
cccgggcacgcatcaaaaaaaccccggactgtccggggcataggcagggt
cgtgcaaaaactgattttggcgagcattaaaaatctttgaatttttttat
atcggagggaacttattttggcaaatgaCGGCTAAATCTTTCCTATTTTG
CCTTATTATAAGCTAGATGATTTGTGTGTTTTGTGATGGCCTGTAGACGT
TGTTTGGTCTCTTTCCATCCTTGATTGGTTCATGTTTGTTTGGTTGATTT
AGTCGTCTTGCTTCAGCTTACCGAACATACATCTGTgtgtttttcctaaa
aaatatcaatttactGAAACGAAGAAAGGGATGACAATGGTTAGACAGTG
AAGGAACAAGATAGAAGAATCTTGCCTTAATTTAAGCAATTCTGATGAAT
TTTTATggttattttgtcaaaattgaaaagaacTACCGTAGGATCATCTA
ATCTCGACATGCGTCTTGCagtctcgacaccggatctgtaaaataatcaa
aacaaaccttgaatgaaattcttggtatcattcttatcgaacaagttcat
ccatcaaactagaagttcagtaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcgcgcttagtcgacctggtttccatttccttattatttattgcaa
gcacacgctctaggcgctaggaggccgcgttaaacttctaggcgccgcac
ctagagcacccggtcccttttcaaattcataaggaaaccgggttctttta
attattttcggttcacggtaaaaaggtctacttaaaaattcctcgcgtgc
aaaatgttgttgtgatttgggcatcttcgatggttgaaagcatgctaatt
agttttttagtgattactacatcgttaaagtgttcttttcaaatataagt
aataacagttcacatttctcatattatattaacaatggATAGAGATAGag
aacaatttagtgattgattgataactttgtatgtatttgtttatgtttga
ttttttatttcgaagaccagcctacaactatgtcgagattgcaagacgta
tgtcgatattaaacggCTCTATGGTAGCCGTCACCCGCCATTGCACCAGC
CGCCaaggagtagataagctgacCCATCACAAGCCCTTTGGAAGGTGGGA
CGGGTGTTAAGATTATTTTTATGCCTGAAGAACGAAAGATTACCTACTAA
TAGACGGCTTTCGTGATACATCATTTGTTTACTCACGTGACTTACCACCC
AATTTATTTGAGGCAAAAAGACCGTAACATTAGCAGAATTTTTACCATTC
AATTTCAAAGTGATATGACTGTTAGCtatgtattttccaaaaatcaaaat
gttaaaaacataactaaaagtttcatgcacttacgtacaatcatcagatg
tGACTAAAAACAgtgttgaaaagaaatttatgtacaagaaaaaaattctg
attCATTAAAAAGTGATTAAAACATGTGATGGGTAATTATTAAAAGACcg
ttaaaagataaaaaagacaAAGGTAGTAAAACTGTAAAATTCTCAAGGGT
CTGGTGGGACATCTTTGAAGCTTTTTAATAAATACTTTGCCGCATGACGA
CACGTAGAAATTAATTCAGATCGTTTATTTAATAGTTTTTCCTTTGACGA
AATAATGTGGTACTTTTCCGTAAGGCATAGGGCACATGATTTGCTTCCAT
TTTTGTACGGTTGGGCGTGGTCGATAACTTTCCACTGTTAGCTATCAAAA
ATTGGATTGATACTCACTTGCCTCCATATTGTATAAGTCTTTTTGCCTCC
AATAATCAAGCGCAATCTCCCACCCACATCAGTCTGTCTGTACAAAATCT
AAATATTGAAACCTGTCTATATTATTTGAAACTAAAAAGGTTGCAAAATT
AGTGTTTCGTGACATCATCATACTGATCCTTAATGACGTCATTGCAGGGG
TAActaacttttcacttcactgaaactATTTAACTTCATTTATCCAATAG
ATTCCCGTGATGATTTCTAATCCAATGAGGNtttcacttcactgaaactA
TTTAACTTCATTTATCCAATAGATTCCAGTGATGATTTCtaatccaatga
ggggtcagcCATTGTTAAAGCCTTCTCAAACTCAAGATATCGCTTTCTTC
AGGTTTTGATGAAGTCATTGGACCCGAAATGACCCAAATTACACATACTC
ATTTTTCTAGCTCCAAAATGTACCTTCTCTAAACCCTCGCTTATATCACA
TATCTTTTATCACATTTTTCCGTTTTGATGATGTCTTCAACCAAAAACGc
ccaaatttcaaagtcacaTTAACgggtcaacgggtagcttatgccccaag
ggcgTCAATCAGTACATAAATAAAGCCTAGGATATATACACAGGGACAAG
GTTGAGTGAgcagaatttttaatttttgtgagaACTAGTTTTGGCAAATT
TAATCTAAACTTTGCAAATTTGCCATTAATGTAGCTAAaggcaattaaaa
tttttcatgcAAGCaagtaccgtagagtcgttgAATATCGACATGTGTCT
TGTtatttcgacatagctgtaggctggtcttcgaaataaaaaatcaaaca
taaacaaatacgtaccaaagttatcaatcaatcactaaattgtactcgcc
ctatcacgtcacagattgttgaaatgtaagaaacgtgaagtggttttttt
tcaaaaagaaaactttaacgatgtagtcactaaaaactaattagcatgct
ttcattcaACCACGAAGatatccaaatcaaaacaacaatttgcATGCGAT
GATTTTTTTactagacctttttaccgtgaactgaaaataataaaaggaAC
CTGGTTTCCTTTcgaatttaatgtgaccgccatactggctTAGCCCCTAG
AGCatgtgtttttgataaataaggaaggggaaaccaggctaagcgcgcga
attattttactaattaaaaatttgagttAGGGAAAATAACTTGCCTTAAA
GGTTACAATTCTTGAGGTACTAAGAGCTAAGTTTCGGATATACATTCAAG
ATAATAATAGTCAACTATATTTCACATTCAATTTCTTTATAATTTCAGGT
TGATAATAATGAACCACGTTGGAATCCTACGATGGCACAGTCCAAAAACA
ACACGTGATCTCCATGCTTGGGAGAAACAATTGAACCGTGCAATTTCAAT
GAGTACTAAAGTCTGTTCGAACCATTTCACAAGTGGGTATTGTTCTGATG
TGTGTCGCATACCAACATTATACTTGAACGGGTATGAGAAAGATGAATAT
AAGCTTTTGTATGGGGAAGACAATTTCCAAGGAGGTAAATTATGCACGCG
ATATGAAATAGAAGAAAATGATGATAATGAAGACCCTTTTGAAGTTATAA
CACCCTGTTTACATGATCACGATTATTTAGGTTTCTCATCACAAACTGAT
TTCCATTATCTGAATCTTTCTTCAAACCAAATGGAGAAAGTGGAGACGAT
GAGTGACAGGGAAAAAGAGATCATGGAATTCTTGAATAAACAATTGATAG
CACGTtcatttgttacaacttgattTGAGGTATGGCAAATTAAAAATTCT
TCAGATAcacatctttttttataagaacgtccaaaaCCTTTTAACGCCTT
CgtatattcttaactttttgagttttagtgTTCTAAAAATCTTCTTACTT
TCACCAGTTTTTTAGTCCTATTGTgccattttttaagaaattgggAGTTT
TAGAgcctacaaagccttaaaatgttctttaaactTGTTCTCTatgtttt
ggccatcgaagccttcaTGTTCAcccagtttgttcttataaaaaagtgtg
tatttcAAAGACTTGTATTTGAAAGAGAGCAGtgtttcttgatatttttg
ttgCTTCACATCGCTGCAGAATGGATGTGGTTTTCATCCaggagattatt
ttttgtttccatttttGGGTCGTGTTTTCATTTTTCCCTTAGGTTTTTTA
GCTAGAACTGATTGATTCACATTTTAAAACCATCCTTGGAATGGTTTTTA
ATAGTCATATTctcaaataaagtgaaaactaaaatatttgttCATATTTC
TTGGTTTTTTCAAAAGTGCCAATAATAAATTCTTTCCATACAACAAATAA
TGACTGATTATTGATTAATGTCATATTCAAGAATTTAAAAGTcgggatat
ccaggctgtaaacaattttaatttttgacgtTTCTGGTTTACTGCCTGGC
TTTTTAAAGTGATTTTCTGTACAAAGTAAAAAGGCAACGCACTTGTACTT
TGTCAATTCAAAATTGTGCGgaacaaagaaaaattgctGTATGTAGCAGa
aacatcaaaatagaaaaatgattTACATCTTGGTTGCCCAGGCTAGAATT
TTGGGATTATTTTGAGTCCCTTTTACAAACGTAGTCAAACTATATTTTGT
ACATAAtgtaaatatatttcaaaacatACGAGTGGTCAATATTTTATCAC
ATTTTATTTACTAAACAAGCTTGGTCGTCTTGAAAGAATACTGTATTTGA
CAATCAtatcttttctattgtaaagaACAAAGACTTATTTATGTATATAA
ATTTATAAAACACTtgcaaaca Coding sequence (CDS) from alignment at sc0000432:168385..174456+ >TCONS_00022768 ID=TCONS_00022768|Name=TCONS_00022768|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000432:168385..174456+ (Clytia hemisphaerica)
ATGGGAAGGAATGATACTTGTATTATACCTGGGTGTTTGAACACAAGAAG
GAAGCCTGAAAGGTTGATAATAATGAACCACGTTGGAATCCTACGATGGC
ACAGTCCAAAAACAACACGTGATCTCCATGCTTGGGAGAAACAATTGAAC
CGTGCAATTTCAATGAGTACTAAAGTCTGTTCGAACCATTTCACAAGTGG
GTATTGTTCTGATGTGTGTCGCATACCAACATTATACTTGAACGGGTATG
AGAAAGATGAATATAAGCTTTTGTATGGGGAAGACAATTTCCAAGGAGGT
AAATTATGCACGCGATATGAAATAGAAGAAAATGATGATAATGAAGACCC
TTTTGAAGTTATAACACCCTGTTTACATGATCACGATTATTTAGGTTTCT
CATCACAAACTGATTTCCATTATCTGAATCTTTCTTCAAACCAAATGGAG
AAAGTGGAGACGATGAGTGACAGGGAAAAAGAGATCATGGAATTCTTGAA
TAAACAATTGATAGCACGTtcatttgttacaacttgaATGGGAAGGAATG
ATACTTGTATTATACCTGGGTGTTTGAACACAAGAAGGAAGCCTGAAAGG
TTGATAATAATGAACCACGTTGGAATCCTACGATGGCACAGTCCAAAAAC
AACACGTGATCTCCATGCTTGGGAGAAACAATTGAACCGTGCAATTTCAA
TGAGTACTAAAGTCTGTTCGAACCATTTCACAAGTGGGTATTGTTCTGAT
GTGTGTCGCATACCAACATTATACTTGAACGGGTATGAGAAAGATGAATA
TAAGCTTTTGTATGGGGAAGACAATTTCCAAGGAGGTAAATTATGCACGC
GATATGAAATAGAAGAAAATGATGATAATGAAGACCCTTTTGAAGTTATA
ACACCCTGTTTACATGATCACGATTATTTAGGTTTCTCATCACAAACTGA
TTTCCATTATCTGAATCTTTCTTCAAACCAAATGGAGAAAGTGGAGACGA
TGAGTGACAGGGAAAAAGAGATCATGGAATTCTTGAATAAACAATTGATA
GCACGTtcatttgttacaacttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022768-exon-sc0000432-1491911889:168385..168670 | TCONS_00022768-exon-sc0000432-1491911889:168385..168670 | Clytia hemisphaerica | exon |
| TCONS_00022768-exon-sc0000432-1510915933:168385..168670 | TCONS_00022768-exon-sc0000432-1510915933:168385..168670 | Clytia hemisphaerica | exon |
| TCONS_00022768-exon-sc0000432-1575043694:168385..168670 | TCONS_00022768-exon-sc0000432-1575043694:168385..168670 | Clytia hemisphaerica | exon |
| TCONS_00022768-exon-sc0000432-1491911889:172933..174456 | TCONS_00022768-exon-sc0000432-1491911889:172933..174456 | Clytia hemisphaerica | exon |
| TCONS_00022768-exon-sc0000432-1510915933:172933..174456 | TCONS_00022768-exon-sc0000432-1510915933:172933..174456 | Clytia hemisphaerica | exon |
| TCONS_00022768-exon-sc0000432-1575043694:172933..174456 | TCONS_00022768-exon-sc0000432-1575043694:172933..174456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:168385..174456 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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