TCONS_00022672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022672
Unique NameTCONS_00022672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022672 ID=TCONS_00022672|Name=TCONS_00022672|organism=Clytia hemisphaerica|type=transcript|length=350bp
tcattcATGGAGTAACTGAAAACACGCCTGAACAAACAGAAATCACTGAC
AGAGCCTTTGTTGATACCCTAATTGAAACGATCAAAATACCAAAACCAAA
CATGAGAGCCATCTCAAGAATCGGTACTCAAGCCACCGATAAAAAACGAC
CAATTAAAGTTGTGCTTGgtacagaaaaagaaaagatgacaGTTCTGCGC
AACCTATCCGCACTGAAAGATAACGAGGAATATAAAGGAATCATCATAAC
GGAAGACCTAACACCAACAGAAAGGTCTGTCCTTAAAGAATGGacggaaa
aagcaaaaaatctcaaCTCCGATTCATCTGCAGTAGTACATAGAGTCCGA
Run BLAST on NCBI

protein sequence of TCONS_00022672-protein

>TCONS_00022672-protein ID=TCONS_00022672-protein|Name=TCONS_00022672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
IHGVTENTPEQTEITDRAFVDTLIETIKIPKPNMRAISRIGTQATDKKRP
IKVVLGTEKEKMTVLRNLSALKDNEEYKGIIITEDLTPTERSVLKEWTEK
AKNLNSDSSAVVHRVR
Run BLAST on NCBI

transcript from alignment at sc0000430:47189..47538

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022672 ID=TCONS_00022672|Name=TCONS_00022672|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at sc0000430:47189..47538 (Clytia hemisphaerica)
TCGGACTCTATGTACTACTGCAGATGAATCGGAGttgagattttttgctt
tttccgtCCATTCTTTAAGGACAGACCTTTCTGTTGGTGTTAGGTCTTCC
GTTATGATGATTCCTTTATATTCCTCGTTATCTTTCAGTGCGGATAGGTT
GCGCAGAACtgtcatcttttctttttctgtacCAAGCACAACTTTAATTG
GTCGTTTTTTATCGGTGGCTTGAGTACCGATTCTTGAGATGGCTCTCATG
TTTGGTTTTGGTATTTTGATCGTTTCAATTAGGGTATCAACAAAGGCTCT
GTCAGTGATTTCTGTTTGTTCAGGCGTGTTTTCAGTTACTCCATgaatga

Coding sequence (CDS) from alignment at sc0000430:47189..47538

>TCONS_00022672 ID=TCONS_00022672|Name=TCONS_00022672|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000430:47189..47538 (Clytia hemisphaerica)
TCGGACTCTATGTACTACTGCAGATGAATCGGAGttgagattttttgctt
tttccgtCCATTCTTTAAGGACAGACCTTTCTGTTGGTGTTAGGTCTTCC
GTTATGATGATTCCTTTATATTCCTCGTTATCTTTCAGTGCGGATAGGTT
GCGCAGAACtgtcatcttttctttttctgtacCAAGCACAACTTTAATTG
GTCGTTTTTTATCGGTGGCTTGAGTACCGATTCTTGAGATGGCTCTCATG
TTTGGTTTTGGTATTTTGATCGTTTCAATTAGGGTATCAACAAAGGCTCT
GTCAGTGATTTCTGTTTGTTCAGGCGTGTTTTCAGTTACTCCATgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012737XLOC_012737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022672-exon-sc0000430-1491911889:47189..47538TCONS_00022672-exon-sc0000430-1491911889:47189..47538Clytia hemisphaericaexon
TCONS_00022672-exon-sc0000430-1510915933:47189..47538TCONS_00022672-exon-sc0000430-1510915933:47189..47538Clytia hemisphaericaexon
TCONS_00022672-exon-sc0000430-1575043694:47189..47538TCONS_00022672-exon-sc0000430-1575043694:47189..47538Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022672-proteinTCONS_00022672-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:47189..47538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50969	1.47218	1.13956	2.22977	0.339317	0.536265	0.646981	0	0.424062	0.262635	1.2746	0.574219	0.836706	0.695142	1.143	1.07329	0.188886	0.580807	0	0	1.21638	1.06795	0	0.262285	1.35074	1.6877	4.14017	4.05029	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top