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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022649 ID=TCONS_00022649|Name=TCONS_00022649|organism=Clytia hemisphaerica|type=transcript|length=1000bp
TAATTGCCGTCTGGAAAATACAAAAAGTATAGCTCTTAAGAACTGATCTG
TACATTCTTTCTTTCGAATATttgacaaaaacattattggCGAGTATACA
AAAATAAATACATTTTAGGGTAAATTGCATATACAGAGgttacaaaaaat
atcaaaagctaAGGTCACAAGATATAAGATCGCCTATCGTCAATCTATAT
CATTGTTTGAATATGCTAAAGTAGATAATACCCTTTTAAATAAAGTTGAT
CAAATCACATTCCGATAATTCTAAAATCGGAACGgaaataaaacaattta
attCTTAGTTCTTGCTGTGGTGAATGCTACTGGTCTTGCGGTGGCATTTC
TGGTCCGTATTTTTCACGGAAAGGGTCAAATCGTGAATTAACCACACCCT
CGTCAGCAGTTCTGCCATAAAATTGTTTATCAATGGTTGTGTCATTCTCG
ACACGTTGGTATTTCGCTCTCTCTGTACCCTTCTCCTGATCGAAAGCATT
CCCGATTGAGGCACCATCTCCTTCATCACACATTTGCTGCATCATTTGCA
tagtttttgattgttttggcgCACCTTTGGCGGCAGGTTTCAAAGCAACA
GGCCCAGTCCATACGGGTGCTCCGAACTTTTTACCTTTAGTGTCCGCCGG
TTTACTATTATTTGTAAAGACGGAACTTGCTCCTGGTGGCGCGAGATTTC
GGTCAAATACAGAGCCAGGTCCAGGAGCAGGTTTTCGATCGAACACTGAT
CCAGGCGAACCTCCTGCAGGTTTTCGATCAAAGACAGAACCAGAACCACT
TGGGTTTGGTGGATTTCGATTTTTATCAAATACAGacattcttagttttt
tttcttcaaatgttCGTTTTacctaaagtaaaaataattcagaaaaaTAA
CATTAAGCCCTATATCTACAATCATGATTTTTGGGtgcgttaaactacag
ttggaaagtagagttatCTCAAGTTTGCTCCAATAGGGCTTGGAATATAg Run BLAST on NCBI protein sequence of TCONS_00022649-protein >TCONS_00022649-protein ID=TCONS_00022649-protein|Name=TCONS_00022649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MSVFDKNRNPPNPSGSGSVFDRKPAGGSPGSVFDRKPAPGPGSVFDRNLA
PPGASSVFTNNSKPADTKGKKFGAPVWTGPVALKPAAKGAPKQSKTMQMM
QQMCDEGDGASIGNAFDQEKGTERAKYQRVENDTTIDKQFYGRTADEGVV
NSRFDPFREKYGPEMPPQDQ Run BLAST on NCBI transcript from alignment at sc0000429:13633..14632 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022649 ID=TCONS_00022649|Name=TCONS_00022649|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0000429:13633..14632 (Clytia hemisphaerica)
cTATATTCCAAGCCCTATTGGAGCAAACTTGAGataactctactttccaa
ctgtagtttaacgcaCCCAAAAATCATGATTGTAGATATAGGGCTTAATG
TTAtttttctgaattatttttactttaggtAAAACGaacatttgaagaaa
aaaaactaagaatgtCTGTATTTGATAAAAATCGAAATCCACCAAACCCA
AGTGGTTCTGGTTCTGTCTTTGATCGAAAACCTGCAGGAGGTTCGCCTGG
ATCAGTGTTCGATCGAAAACCTGCTCCTGGACCTGGCTCTGTATTTGACC
GAAATCTCGCGCCACCAGGAGCAAGTTCCGTCTTTACAAATAATAGTAAA
CCGGCGGACACTAAAGGTAAAAAGTTCGGAGCACCCGTATGGACTGGGCC
TGTTGCTTTGAAACCTGCCGCCAAAGGTGcgccaaaacaatcaaaaacta
TGCAAATGATGCAGCAAATGTGTGATGAAGGAGATGGTGCCTCAATCGGG
AATGCTTTCGATCAGGAGAAGGGTACAGAGAGAGCGAAATACCAACGTGT
CGAGAATGACACAACCATTGATAAACAATTTTATGGCAGAACTGCTGACG
AGGGTGTGGTTAATTCACGATTTGACCCTTTCCGTGAAAAATACGGACCA
GAAATGCCACCGCAAGACCAGTAGCATTCACCACAGCAAGAACTAAGaat
taaattgttttatttcCGTTCCGATTTTAGAATTATCGGAATGTGATTTG
ATCAACTTTATTTAAAAGGGTATTATCTACTTTAGCATATTCAAACAATG
ATATAGATTGACGATAGGCGATCTTATATCTTGTGACCTtagcttttgat
attttttgtaacCTCTGTATATGCAATTTACCCTAAAATGTATTTATTTT
TGTATACTCGccaataatgtttttgtcaaATATTCGAAAGAAAGAATGTA
CAGATCAGTTCTTAAGAGCTATACTTTTTGTATTTTCCAGACGGCAATTA
Coding sequence (CDS) from alignment at sc0000429:13633..14632 >TCONS_00022649 ID=TCONS_00022649|Name=TCONS_00022649|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000429:13633..14632 (Clytia hemisphaerica)
atgtCTGTATTTGATAAAAATCGAAATCCACCAAACCCAAGTGGTTCTGG
TTCTGTCTTTGATCGAAAACCTGCAGGAGGTTCGCCTGGATCAGTGTTCG
ATCGAAAACCTGCTCCTGGACCTGGCTCTGTATTTGACCGAAATCTCGCG
CCACCAGGAGCAAGTTCCGTCTTTACAAATAATAGTAAACCGGCGGACAC
TAAAGGTAAAAAGTTCGGAGCACCCGTATGGACTGGGCCTGTTGCTTTGA
AACCTGCCGCCAAAGGTGcgccaaaacaatcaaaaactaTGCAAATGATG
CAGCAAATGTGTGATGAAGGAGATGGTGCCTCAATCGGGAATGCTTTCGA
TCAGGAGAAGGGTACAGAGAGAGCGAAATACCAACGTGTCGAGAATGACA
CAACCATTGATAAACAATTTTATGGCAGAACTGCTGACGAGGGTGTGGTT
AATTCACGATTTGACCCTTTCCGTGAAAAATACGGACCAGAAATGCCACC
GCAAGACCAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022649-exon-sc0000429-1491911889:13633..14632 | TCONS_00022649-exon-sc0000429-1491911889:13633..14632 | Clytia hemisphaerica | exon |
| TCONS_00022649-exon-sc0000429-1510915933:13633..14632 | TCONS_00022649-exon-sc0000429-1510915933:13633..14632 | Clytia hemisphaerica | exon |
| TCONS_00022649-exon-sc0000429-1575043694:13633..14632 | TCONS_00022649-exon-sc0000429-1575043694:13633..14632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000429 | supercontig | sc0000429:13633..14632 . |
Blast
The following BLAST results are available for this feature:
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