TCONS_00022616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022616
Unique NameTCONS_00022616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022616 ID=TCONS_00022616|Name=TCONS_00022616|organism=Clytia hemisphaerica|type=transcript|length=436bp
CGATCAAATACTGTCAGTCCAGTCATCTTTCACACAAGGTACATACAACA
TTCGCACCCTCGATGGGGGACTCTTCATTAAATGTTAATTGAATAAAGTA
TGGACTTTGTCTAGCTATATTGAATGATGGACTGACTAAAAAGTGCAGGt
ttaaatataattatgaaatacAATCATTCATTATATTATCAGATTATAAT
CGTGAGAAAAGGTAACTTGAAAACATTTCTCATCCATGATCAACATATGT
AAATAACAAAGGTCGGGTGTATAAGTTAATGTTCTAAAATACCAAGAAAT
CTATTCATGAAAGTCATCTACCACGTCATAAAGCCAACAACAGGAATTCT
ATTCTGCTGTGTATGTCATTTCCCAACCCGTAATCACAACGTCTGCTTTG
AAAATCAGTATTCGGTTTGCAAGCGATAAATTGTAC
Run BLAST on NCBI

transcript from alignment at sc0000428:271185..271620

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022616 ID=TCONS_00022616|Name=TCONS_00022616|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000428:271185..271620 (Clytia hemisphaerica)
GTACAATTTATCGCTTGCAAACCGAATACTGATTTTCAAAGCAGACGTTG
TGATTACGGGTTGGGAAATGACATACACAGCAGAATAGAATTCCTGTTGT
TGGCTTTATGACGTGGTAGATGACTTTCATGAATAGATTTCTTGGTATTT
TAGAACATTAACTTATACACCCGACCTTTGTTATTTACATATGTTGATCA
TGGATGAGAAATGTTTTCAAGTTACCTTTTCTCACGATTATAATCTGATA
ATATAATGAATGATTgtatttcataattatatttaaaCCTGCACTTTTTA
GTCAGTCCATCATTCAATATAGCTAGACAAAGTCCATACTTTATTCAATT
AACATTTAATGAAGAGTCCCCCATCGAGGGTGCGAATGTTGTATGTACCT
TGTGTGAAAGATGACTGGACTGACAGTATTTGATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012701XLOC_012701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022616-exon-sc0000428-1491911889:271185..271620TCONS_00022616-exon-sc0000428-1491911889:271185..271620Clytia hemisphaericaexon
TCONS_00022616-exon-sc0000428-1510915933:271185..271620TCONS_00022616-exon-sc0000428-1510915933:271185..271620Clytia hemisphaericaexon
TCONS_00022616-exon-sc0000428-1575043694:271185..271620TCONS_00022616-exon-sc0000428-1575043694:271185..271620Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:271185..271620 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.984813	1.02738	0.509905	0.204794	3.3962	2.78356	1.77669	1.90771	2.05257	2.01867	3.98275	4.41658	1.33102	1.73645	0.354748	1.62217	2.94229	1.82282	2.87338	3.39824	4.39471	5.47849	1.71783	1.53169	0	0.449276	4.33992	7.39111	2.01028	1.64665
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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