TCONS_00022541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022541
Unique NameTCONS_00022541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022541 ID=TCONS_00022541|Name=TCONS_00022541|organism=Clytia hemisphaerica|type=transcript|length=358bp
ATAATACCGTTCGCGTACATAACAAATAGACATAACATCTCTCCCCCACT
ACAAATAGCAAGTAGATAGAGgtcaaaaataaagttaaagCTTAAGCTAA
ACATTTCAATATCTCCCCTAATTGGAAAAAGTTCATAAATCATAAATCGT
AACAGCTTCAACAAATGTCAACATTTTGAAGTTCGTAAAttgttctgtaa
aatatcaaaacacttcaagttttttttttaatgttcatgTAAGTTCGTAA
TTAGATAGCCACTTTGGAGCTTGTTTTACACGTTGTGGTCTTGGAATAAA
AAGAGGTTCTGGGTCATTGTCCTCTTCATTGTATGGGATTGTTGCATCAG
ATGATGTT
Run BLAST on NCBI

transcript from alignment at sc0000424:32512..32869

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022541 ID=TCONS_00022541|Name=TCONS_00022541|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000424:32512..32869 (Clytia hemisphaerica)
AACATCATCTGATGCAACAATCCCATACAATGAAGAGGACAATGACCCAG
AACCTCTTTTTATTCCAAGACCACAACGTGTAAAACAAGCTCCAAAGTGG
CTATCTAATTACGAACTTAcatgaacattaaaaaaaaaacttgaagtgtt
ttgatattttacagaacaaTTTACGAACTTCAAAATGTTGACATTTGTTG
AAGCTGTTACGATTTATGATTTATGAACTTTTTCCAATTAGGGGAGATAT
TGAAATGTTTAGCTTAAGctttaactttatttttgacCTCTATCTACTTG
CTATTTGTAGTGGGGGAGAGATGTTATGTCTATTTGTTATGTACGCGAAC
GGTATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012637XLOC_012637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022541-exon-sc0000424-1491911889:32512..32869TCONS_00022541-exon-sc0000424-1491911889:32512..32869Clytia hemisphaericaexon
TCONS_00022541-exon-sc0000424-1510915933:32512..32869TCONS_00022541-exon-sc0000424-1510915933:32512..32869Clytia hemisphaericaexon
TCONS_00022541-exon-sc0000424-1575043694:32512..32869TCONS_00022541-exon-sc0000424-1575043694:32512..32869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:32512..32869 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.317675	2.85884	0.419934	3.53209	1.01495	0.918367	1.20005	0.990584	0.678009	4.56892	1.98035	1.11271	0	0.546959	1.01902	0.574795	0.388776	0.791346	1.54076	4.08801	6.22627	1.96436	1.90447	0.255643	0	1.98933	4.70398	0.821725	1.38839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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