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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022451 ID=TCONS_00022451|Name=TCONS_00022451|organism=Clytia hemisphaerica|type=transcript|length=2266bp
GTTGATTGTTATGCTAATTAGCTGACATAATTGTCGAATTGTCTATTAAA
ACTTGGATCCAAACCTCAAAAGTTTTACCAGACAAAGCAACTAGACAAGT
ATCTATTGTTGTCTGTTTTGTAAGCCATATGATAATTTCCAAGTGTTTTA
CAAGACTCCTTTCCACTATAAGTCCTTCGAGAGATTGGTGGACATTGAGA
AAttcatattttggaaaattcattAAAGAATCGACATGAGTTTGCTAAAT
ATCAAAGGAGAGGAGCTCGAAAAAACATTGAGTAATTTATTTGGCAACAA
CGACCAGCTAATTGCGCTCGTCCAACAGGCTTTTACGCAAAAGGAAAATG
CAATACCCAGTGACCAAGTTCCAAATGTCAAGATGCAAGAATCATGGAAA
ATCGTCAGTAATTTGAAAGAACTGCAAGCAAGGATTGCAGAAGCTAAGAA
AGATGGTAAGAAATTAAGAGTAGTTGGTGCGAACCATTCAGCTCCGGATG
CTATTGGTGACCAATTACAAGAAGGTAATAAGAATGTATTGATGATCGTC
CTGAGTGGTGATTATCGTAAAATGACGCTGGTCGATGATAAAGgTGACCC
TATTGTGACAAGCAAAACAGAGGCGAACAAGACAGAAACAAAAACATCCC
AGACaggaacaaaacaaaacgtAGACCCACACATTTTTGTTAAAGTCGGT
GGTGGTTGCTCTCTAGGTATCAACCCTGACGATATTGTTACTGGCAAAGA
CAAGTCATCAATTTCAACATCTTTTAATTACCAAATCGATTCTTGGGGTT
ATGCCTTACCGGACCTCGGTGGAATCACGCAGCAGACGGTTGGTGGGTTT
ATGCTGACTGGCTCGGCAGGGGGCAGTATAACTTATGCATTCAGTGAAGC
TATTGAGATGATCGAGTTTGTGGACGGGACCGGAACAGTGCAACATGCAA
AACGAGGTACTGATTTGTGGAAAGCTGTGGGTGTATCAATGGGTTTGTTT
GGGGTTGTCACCAATATCACTTTCAAAGTATCCAAAAGATTCTTGGTGCA
AGGGATtgagaaaaatgagaaatttgCTGATTCTACTATCGGACCACAAG
GTAAACCAGTTAAAGACCCGACCAAGCAAACCTACAGACTGCAGAAAAGC
ATCGAAGAAAAAGAGTATTACCGTGCCTTATGGTTCCCTCAAGTTGATCG
AGTTCAAACCTGGGAATGTAGTCGTGTTCCACACAAGGAGTTCTTCGCAA
ATATCAACTCCTACGTAAATGAATTAGCTACGAAGCCAGATGAAGCCATG
TTAGGATTACgactgattgattttctgttaAATTTGGAGAAGAATACAAT
TCCATTTAAAGATCTTGAATTGATTCTGGATTGTGTTTTGGACATCATCG
TTCGgtatattttcaagatttttgtaCCACTTGGCGATGAAGGAGAATCG
CATTATTGTGACTTGTGGTGGAAAGCCTTACCCACAGATGATAAAGTCCC
TGTGGACACCACCATGAAAATGGTCTTCACGGAAGTTTGGATGCCAATAG
ACCAAAGTGATGAAGTCATGAGAAGATTAACAAAGATGCTTGGTGGTCAA
GATGGTTGGAAGAAAGCTTCAAATACACCTATCGAGTTTTATGGTGCAAA
GAAGTCTGATTTTTGGCTTAGTATGTCCAACCAGGGCAATATGGTGCGTG
TTGATCCTTTTTGGTATGCCAACAACATTGATGATGCCAAGCACAAAAAC
CGAACAGCTTATTTCGCCAATTTCTGGAATGCTTTAATGGACATCAAGGG
AATCTGTTTCCACTGGGGGAAATTTCTACCCGAAGTTGGGGAAACATACG
GTCGCACCAAATATGACAGTAAGAAGATTATGGAGGCATTCAACAAATCG
AATTTGATCAAATGGAACGTGTTGAGGTCAAAACATGATCCACAAGATGT
CTTTCTTACCGAGTACTGGAAAGCACAACTTGGTGATATTATTAAGCTTG
ACTCTAAAAAGTAGcttgaacaaaaaattgaattgctTGCGGAGGCGACA
GACCTCGGCTAGCCTTGAATAATTATACATAGCATTTCCAAGTACGAAAT
ATTTCATCTTTCATGGGGTAAGAGGAATAGACtatttttttagtaaaaaa
agttaaaactagaaatttaattttattcattatttttgacgtttcggtgt
cttctatttttttcttctctatttTTTTAATCTGACAGGTTTTTCCAGGC
CAAATTTTTTGGAAAC Run BLAST on NCBI transcript from alignment at sc0000421:63601..71412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022451 ID=TCONS_00022451|Name=TCONS_00022451|organism=Clytia hemisphaerica|type=transcript|length=7812bp|location=Sequence derived from alignment at sc0000421:63601..71412+ (Clytia hemisphaerica)
GTTGATTGTTATGCTAATTAGCTGACATAATTGTCGAATTGTCTATTAAA
ACTTGGATCCAAACCTCAAAAGTTTTACCAGACAAAGCAACTAGACAAGT
ATCTATTGTTGTCTGTTTTGTAAGCCATATGATAATTTCCAAGTGTTTTA
CAAGACTCCTTTCCACTATAAGTCCTTCGAGAGATTGGTGGACATTGAGA
AAttcatattttggaaaattcattAAAGAATCGACATGAGTTTGCTAAAT
ATCAAAGGAGAGGTAACTAACttactttcttttcttttcttgcaatgggc
ttttccagaaatagtccgtgccccctgtttgaggatatcggatatccagg
ggttgaCAATTTTTGTCCAAAAGTAGATATGCAGGGGGTTTAAAACATCT
ACCAGGAAGCGGATAtgcagggggtaaagtgtcttttcaagttaaaaaat
acaatatccagGGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAT
TAAATGGAATATTATTCAATTAAAACTCGAATCGCGcttctatgactttt
ttcagacctctttttaaagtttcagattgatttccagtgtaaaATTGACG
TCTCTCAGAATTGCTAGAATTTCAacccaaaccatgagattaaccaggaa
tcccatgcttgttttcgtgaaattctggataaatttcCCTCActcgttgc
actcgggaaatttcaaaaaatttcaaaattgacctcgggaaatttatccc
gaatttccctcataaccatgagattactagtactaatttgCCGCTAGAGC
AtacaaaactaataaaatgaaattattctgaAATTATTTTCTAGGAGCTC
GAAAAAACATTGAGTAATTTATTTGGCAACAACGACCAGCTAATTGCGCT
CGTCCAACAGGCTTTTACGCAAAAGGAAAATGCAATACCCAGTGACCAAG
TTCCAAATGTCAAGATGCAAGAATCATGGAAAATCGTCAGTAATTTGAAA
GAACTGCAAGCAAGGATTGCAGAAGCTAAGAAAGATGGTAAGAAATTAAG
AGTAGTTGGTGCGAACCATTCAGCTCCGGATGCTATTGGTGACCAATTAC
AAGAAGGTAATAAGAATGTATTGATGATCGTCCTGAGTGGTGATTATCGT
AAAATGACGCTGGTCGATGATAAAGGTAATTCCTACACACTTTTTATTTA
TcggaaaaagtttatttttgacTTATCTTCCGacgtttttaaaaattttt
aaggcTCGAACATTTTAATATGCCTAATTTATTtacctaaaaactaaaaa
taaccTTGAACATTTATGAGAACACTTTTGGATTATTTCAGATTAAAATT
CCGAAATTATTTAACCGACCATGCTGCTCACGTCAGATTATAGTCCAGCa
gaatttcatcaaaaatagagatgagctggagtttttacaagatacttcac
taattggtcatttaaagtgatagagatgacgcgtactttagaaaaagtaa
tgagattcttttattacatcttaacgaccaaccaagtcaaataagagctt
gtaaaaactctagCTTGTCCCCAAAAATAgggtcaacctagaaaaaaatt
tatgaaaggtttctatataccgTTAGAAAGATAATTTTGTGGGTAGCATT
CAAAAGctgatgaaattatttttccaacggtatgtagaaaccttttataa
aagttttttctAGGTTGACTCAAGACTCTACTGGACTATTATGTGTGTTt
gctattataaaaaaaaattcttttgatatAGATATAGAGCAAAAATCTAC
AAATAAACAATTCAATTCTCGGCGTTTGACCCATCAAACCTTGCCACCAA
CCGGCGTGGTACCTACATAATACAGATCACAAggcttttttatcttttta
ttaatttcattttaggTGACCCTATTGTGACAAGCAAAACAGAGGCGAAC
AAGACAGAAACAAAAACATCCCAGACaggaacaaaacaaaacgtAGACCC
ACACATTTTTGTTAAAGTCGGTGGTGGTTGCTCTCTAGGTATCAACCCTG
ACGATATTGTTACTGGCAAAGACAAGTCATCAATTTCAACATCTTTTAAT
TACCAAATCGATTCTTGGGGTTATGCCTTACCGGACCTCGGTGGAATCAC
GCAGCAGACGGTTGGTGGGTTTATGCTGACTGGCTCGGCAGGGGGCAGTA
TAACTTATGCATTCAGTGAAGCTATTGAGATGATCGAGTTTGTGGACGGG
ACCGGAACAGTGCAACATGCAAAACGAGGTACTGATTTGTGGAAAGCTGT
GGGTGTATCAATGGGTTTGTTTGGGGTTGTCACCAATATCACTTTCAAAG
TATCCAAAAGATTCTTGGTGCAAGGGATtgagaaaaatgagaaatttgCT
GATTCTACTATCGGACCACAAGGTAATTCCATTTTATACATTTGGAAAGG
tattaagtggataaattttcgcgtgtattaattttcgcgagacgagaatt
taaagatttcgcgtggatggtaaatttcgcgaatcaagggtctttaaaat
tttcgcgtgggttaaatttcgcaaaaatgaccttctttatttaatttcgc
AACTAAATAAATTGTAACTAGAAAAGACATGcgttttttaatcgaacaaa
gGCAGACAAAGTCACTCAAAAGCTTTCATAAAACTTCTAAGAAAGTACTT
TTAGGAGGTTACTAGagtttttcattgaaatgaagAGTTGAACTCGTAAT
ATGCTTTGATTGTAACATGTTTTCTAGAAAGTGATCTCTTTCTTTGATTT
CGCGAACTTTTATTtttgcgattgtaaaattccaaataatttcgcgtgga
ctaattttcgcgaatcaaatGCCTTTAAAAATTTGGcttggattaaattt
cgcgaaaatggccaaaattcgcgaaaacctcgaaaattaatccacgcgaa
aatttatccacttaaggtagttcGAGAAAATGTTCCTTTTTCTCTTAGTT
CCACGAGAGTATTTTTCGCTAAAGTTATtactcattattttttattccac
cataatttttttttaccccaccataaattttttttattgactaCACGGTA
AGGTAGATAGTTGACAAGGGTATCATCTGGGTTTCTTATTTTATTTGATA
TCTGTTAATGTAGAAGACGACTGTGGTCTTCTCTGAGGTCCTGAGTAGTA
GTTGGGGTAGTAGTGGGAGTAGTAGTGGGGGTAGTATGAATAAAAAGGGg
gttcaattttattttatttgatatcTGTTAATGTAGAAGACGACTATGGT
TTTCTCTGAGGTCCTGAGTAGTAGGGGGGGGGTGTAGTATGAATAAAAGG
GGgtcgattttttttctaaatataatAAATGGGGTACCTTTTGCCAGGGG
TCTGGAAATTATGCCTCTAAAAATCCCCCAAAATAAAGTAACTAAAACCA
AGCTAATTAGAGcaaattatctttttttatagctgaagatgttttcaaaa
ttaaataagAGTCTAATAAGAATGGGGTGGGGGTCTAAaacttctttttc
gaaaataaataacCGAGGGAGACGTTTACTTTGGAGTTTTACAGTAATTT
TATGTTTGGTTACAGGTAAACCAGTTAAAGACCCGACCAAGCAAACCTAC
AGACTGCAGAAAAGCATCGAAGAAAAAGAGTATTACCGTGCCTTATGGTT
CCCTCAAGTTGATCGAGTTCAAACCTGGGAATGTAGTCGTGTTCCACACA
AGGAGTTCTTCGCAAATATCAACTCCTACGTAAATGAATTAGCTACGAAG
CCAGATGAAGCCATGTTAGGATTACgactgattgattttctgttaAATTT
GGAGAAGAATACAATTCCATTTAAAGATCTTGAATTGATTCTGGATTGTG
TTTTGGACATCATCGTTCGgtatattttcaagatttttgtaCCACTTGGC
GATGAAGGAGAATCGCATTATTGTGACTTGTGGTGGAAAGCCTTACCCAC
AGATGATAAAGTCCCTGTGGACACCACCATGAAAATGGTAAGATTGaact
atttttttataagaacaattttataagagctCGAGACTAAAATTCAGtcc
aaattttaaaacttttgtcGTTGACACTATCATAGAAATGGTAAGATTCT
ACAACCCCAGTCCACTAATGGAAAAGTTGATATACACTAAAGTCACAGTC
CCAGCTTGGTGTAAAACATGACTTACAGGAAAAGAATTATCACAACAAAA
TCGAACAGCTAGTAACTGACAGCTAATAAAAGTTTATTCACATTTTGTTA
Nctaattttcgcgagacgagaattttaaatttcgcgaatcaagggtcttt
aaaattttcgcgtgggttaaatttcgcgaaaattaccttctttatttaat
ttcgcAACTAAAGAAATTGTAACTAGAAAAGACATgtgttttttaatcga
acaaagGCAGACAAAGTCACTCAAAAGCTTTCATAAAACTTCTAAGAAAG
TACTTTTAGGAGGTTATTAGAGTTTTTAATTGAAATGAAGAGTTGAACTC
GTAATATATTTTGATTGTAACATGTTTTCTAGAAAGTGATCTCTTTCTTT
GATTTCGCgaacttttattttttcgactgtaaaattccaaataattCGCG
TGGACTAAGTTTCGCGAATCAAATGCCTTTAAAAATTTGGCTTGGATTAA
ACTttgcgaaaatggccaaaattcgcgaaaaactcgaaaattaatccacg
cgaaaatttatccacttaaggtagttcGAGAAAATGTTCCTTCTTCTCTT
AGTTCCACGAGAGTATTTTTCGCTAAAGTTATTACTCATCATTTTTTACT
CCACCATAATTTTTATTGACTACATGGTAAGGTAGATAGTTTACATGGGC
ATCATCTGGGTTTCTTATTTTATTTGATATCTGTAATGTAGAAGACGACT
GTGCTCTTCTTTAAGGTTCTGAGTGGGGGTAGTATGAATAAAAGGgggtt
cgattttttttctaaacataATAAATGGGGTACGTTTTTGCCAGGGGTCT
GGAAATTATGCCTCTAAAAAGCCCCCAAAATAAAGTAACTAAAAACAAGC
TAATTAGAGCAAATTACTTTTCATAGCTGAAgatgttttcaaaattaaat
aaaagagGGGGAGGTCTAATAAGAATGGGGTGGaggtcaaaaactttttt
ttcgaaaataaataacCGAGGGAGACGTTTATTTTGGAGTTTTACAGTAA
TTTTATGTTTGGTTGCAGGTAAACCAGTTAAAGACCCGACCAAGCAAACC
TACAAACTGCAGAAAAGCATCGAAGAAAAAGAGTATTACCGTGCCTTATG
GTTCCCTCAAGTTGATCGAGTTCAAACCTGGGAATGTAGTCGTGTTCCAC
ACAAGGAGTTCTTCGCAAATATCAACTCCTACGTAAATGAATTAGCTACG
AAGCCAGATGAAGCCATGTTAGGATTACgactgattgattttctgttaAA
TTTGGAGAAGAATACAATTCCATTTAAAGATCTTGAATTGATTCTGGATT
GTGTTTTGGACATCATCGTTCGgtatattttcaagatttttgtaCCACTT
GGCGATGAAGGAGAATCGCATTATTGTGACTTGTGGTGGAAAGCCTTACC
CACAGATGATAAAGTCCCTGTGGACACCACCATGAAAATGGTAAGATTGa
actatttttttataagaacaattttataagagctCGAGACTAAAATTCAG
tccaaattttaaaacttttgtcGTTGACACTATCATAGAAATGGTAAGAT
TCTACAACCCCAGTCCACTAATGGAAAAGTTGATATACACTAAAGTCACA
GTCCCAGCTTGGTGTAAAACATGACTTACAGGAAAAGAATTATCACAACA
AAATCGAACAGCTAGTAACTGACAGCTAATAAAAGTTTATTCACATTTTG
TTAGGTGTTTACAAAAACCCAACACCGTCAATATATTTCCGGCAGTTTCT
GCACGGGCATGATGTAGACTTCAATTGATTACTCTTTCCTTAAAAATACT
ACAGTATACTCATCTGGTATTAATTCCCAAATTTTTGATCCTAAAAACGA
TAGTAACTCTTGTCGTGAGCTTACATATTTTACACATCAATAAAGCAAAT
AGACAGCCTTGGGGATAGCAAATATgtttgctggtagttggtacaaaata
aataaacactcagattttcattagataaACATTGCAACAGATCCGAACTC
AAGCTCTGGGTTGCTAAGAATTTTGAGTGCTTTAAGGTTAAGATCATAGA
ACAGAAATAGGTTTTTGACCAACAAAAGAATTCTCAAAAACTTAGACACG
CGACACTCTGAACAATGAATTTATTTCTCTTGATCTCAAGCAAGGCGTTC
CGCGATCACTTTATCAAGTGTTTTGTTATAGAAAATAACATATTGTTTGA
AAACGGGTTCGACGCTGTCTTTACTTGATACGGCGATTAGaagatatttt
attatttgtcGTCCACAGGTCTTCACGGAAGTTTGGATGCCAATAGACCA
AAGTGATGAAGTCATGAGAAGATTAACAAAGATGCTTGGTGGTCAAGATG
GTTGGAAGAAAGCTTCAAATACACCTATCGAGTTTTATGGTGCAAAGAAG
TCTGATTTTTGGCTTAGTATGTCCAACCAGGGCAATATGGTGCGTGTTGA
TCCTTTTTGGTATGCCAACAACATTGATGATGCCAAGCACAAAAACCGAA
CAGCTTATTTCGCCAATTTCTGGAATGCTTTAATGGACATCAAGGGAATC
TGTTTCCACTGGGGGAAATTTCTACCCGAAGTTGGGGAAACATACGGTCG
CACCAAATATGACAGTAAGAAGATTATGGAGGCATTCAACAAATCGAATT
TGATCAAATGGAACGTGTTGAGGTCAAAACATGATCCACAAGATGTCTTT
CTTACCGAGTACTGGAAAGCACAACTTGGTGATATTATTAAGCTTGACTC
TAAAAAGTAGcttgaacaaaaaattgaattgctTGCGGAGGCGACAGACC
TCGGCTAGCCTTGAATAATTATACATAGCATTTCCAAGTACGAAATATTT
CATCTTTCATGGGGTAAGAGGAATAGACtatttttttagtaaaaaaagtt
aaaactagaaatttaattttattcattatttttgacgtttcggtgtcttc
tatttttttcttctctatttTTTTAATCTGACAGGTTTTTCCAGGCCAAA
TTTTTTGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022451-exon-sc0000421-1491911889:63601..63862 | TCONS_00022451-exon-sc0000421-1491911889:63601..63862 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1510915933:63601..63862 | TCONS_00022451-exon-sc0000421-1510915933:63601..63862 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1575043694:63601..63862 | TCONS_00022451-exon-sc0000421-1575043694:63601..63862 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1491911889:64995..65325 | TCONS_00022451-exon-sc0000421-1491911889:64995..65325 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1510915933:64995..65325 | TCONS_00022451-exon-sc0000421-1510915933:64995..65325 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1575043694:64995..65325 | TCONS_00022451-exon-sc0000421-1575043694:64995..65325 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1491911889:66066..66572 | TCONS_00022451-exon-sc0000421-1491911889:66066..66572 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1510915933:66066..66572 | TCONS_00022451-exon-sc0000421-1510915933:66066..66572 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1575043694:66066..66572 | TCONS_00022451-exon-sc0000421-1575043694:66066..66572 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1491911889:67766..68187 | TCONS_00022451-exon-sc0000421-1491911889:67766..68187 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1510915933:67766..68187 | TCONS_00022451-exon-sc0000421-1510915933:67766..68187 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1575043694:67766..68187 | TCONS_00022451-exon-sc0000421-1575043694:67766..68187 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1491911889:70669..71412 | TCONS_00022451-exon-sc0000421-1491911889:70669..71412 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1510915933:70669..71412 | TCONS_00022451-exon-sc0000421-1510915933:70669..71412 | Clytia hemisphaerica | exon |
| TCONS_00022451-exon-sc0000421-1575043694:70669..71412 | TCONS_00022451-exon-sc0000421-1575043694:70669..71412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:63601..71412 + |
Blast
The following BLAST results are available for this feature:
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