TCONS_00022443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022443
Unique NameTCONS_00022443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022443 ID=TCONS_00022443|Name=TCONS_00022443|organism=Clytia hemisphaerica|type=transcript|length=402bp
CGCTCCCTCCGCCCTCTGGCTGGATTATTTACATTCACGAAGAAATCGTG
TGCACGGCTAGATGTCCAAGTGGATTCTTGTATCACAACAGATCAACTTT
AGATTAACCTATAACTGGCAGAATCAGTGAGGAAAATATACTAGGATGAt
ctattacattgaaaatatgGTTTTTGTTGTGAAAACACATTTAAATTGAC
TTAAATCAATGTTGCTTTGGAGTTTAgcgcaaaattttaaggattggcgc
acatcacgtgaaagtgataatttggaatttctggactattttgatatttc
aaagccttttttaaagtatataaagtagAACTATAGTCCATTTTAGTCAA
ACAGcgaaagaattttgtaaaacggtcgaTTTATTACAGAGAAATAGAGA
TA
Run BLAST on NCBI

transcript from alignment at sc0000417:224140..224541

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022443 ID=TCONS_00022443|Name=TCONS_00022443|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000417:224140..224541 (Clytia hemisphaerica)
TATCTCTATTTCTCTGTAATAAAtcgaccgttttacaaaattctttcgCT
GTTTGACTAAAATGGACTATAGTTctactttatatactttaaaaaaggct
ttgaaatatcaaaatagtccagaaattccaaattatcactttcacgtgat
gtgcgccaatccttaaaattttgcgcTAAACTCCAAAGCAACATTGATTT
AAGTCAATTTAAATGTGTTTTCACAACAAAAACcatattttcaatgtaat
agaTCATCCTAGTATATTTTCCTCACTGATTCTGCCAGTTATAGGTTAAT
CTAAAGTTGATCTGTTGTGATACAAGAATCCACTTGGACATCTAGCCGTG
CACACGATTTCTTCGTGAATGTAAATAATCCAGCCAGAGGGCGGAGGGAG
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012590XLOC_012590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022443-exon-sc0000417-1491911889:224140..224541TCONS_00022443-exon-sc0000417-1491911889:224140..224541Clytia hemisphaericaexon
TCONS_00022443-exon-sc0000417-1510915933:224140..224541TCONS_00022443-exon-sc0000417-1510915933:224140..224541Clytia hemisphaericaexon
TCONS_00022443-exon-sc0000417-1575043694:224140..224541TCONS_00022443-exon-sc0000417-1575043694:224140..224541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:224140..224541 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94063	3.36017	4.79517	4.5128	23.3116	13.7349	22.2669	36.1602	16.5409	17.3821	24.5136	11.5476	13.8979	7.63938	6.79073	8.75398	3.62381	6.57322	10.1792	27.1934	11.5071	9.11655	1.9247	8.14168	6.56102	16.6141	45.4019	32.1378	26.1834	29.7768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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