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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022422 ID=TCONS_00022422|Name=TCONS_00022422|organism=Clytia hemisphaerica|type=transcript|length=3062bp
CTTTACTtgtgtgaaaattttcattttgttccACTCCAAAAAAATCGATA
TTtataaaatgcaaaaaaaaaagtttaaaggtACAAGCTTTACCATTAtc
gtaaaattttaaatttattataaTATAAAAAGGAAGTGCATGGCAAGGAA
aataaaattgccaaaaattaacatttaaaaaaaattgtaattgtaaaaaa
ttaatatttcctTCTAAAGTAATCATTACCATATAATAATAAagtgttta
aatttttaaatttataagtcaaaattatttttgtaaatttatgaTTTGCA
TAGTGAGTTACATTTGTATGGGGTAAGTCTTAggcgggaattttatacac
gattagCATCCACTATTCAAGACATATAAGAGGGGATGGGTGCGTGTGTG
TAGCCTATTGAGGGATAAcctatcccagctggcacacaacgttttttcga
cgtttatctaacgttcacaacgtccatataacgttagataaacgttgaaa
caacgttgtgtgccagctgggatagaAGTATCCCGGATGAAACACAATGT
TAATTCAACGTTCATTTGACGTTTATTTAAGGCCATTgatgaacgtcgaa
acaacgttacGGGCAAAGAGAAATTCTTAGGGGAGTCGGCCTTCTGAAAA
TGCCACCACGCTCATCTAaggttaaatggacgttgtgaacatcagataaa
cgttgaaacaacggaATTGCACACAATTAAGCAACGATTTAAAtgcaaat
tttgaagaaaaaaaaacaattacacgttttgatttttatcaagAAATTAT
CTATGCCTATGTCAGgttcgcattatgcttagcattgtattgttctcaaa
caatagagccattgtttaggtaccaaaaactgagcctgcatataaTGATA
AGCGTTAAGGCCgatctccacttgcgcgcgcttcgatcgcactttatCTA
ACAATgtttccacgctattggtcaaaagaaaatgaagcaattccattggc
gccatctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttt
cgagtgcgcgctacatttttattccgtaatcttttctccaagcaaaaagg
attggagccaaaaggtgcgatcgcagcgcgcgcaagtggaggccggcctt
tatgcttatagaaaaaacaaTTAGATCGAATTATAGAACCTCTCCCTACA
TGTAGGTAAAAATATCATTGATTTCTGAGACAGAAAGGAAAGGCTAAAAA
TCGATGCTTTTGAATAGGAAATTGTGTTTTTATCAGTTCTCACAAATTAT
TATTACCAAGTATTTGGCGCATGTGAGGTGCATCTAATCAAATTTTGCAT
AATACTTAATAGATTGAGATgacttggagtttttacaagatacttcacta
attggtcatttaaagtgatagagatgacgcgttctttagaaaaagtaata
agattcttttattacatcttaacgaccaaccaaatcgaataagagcttgt
aaaaactccagcttgtcccaataGATTGTGCTAAAATCTCACGCGTCCTC
TACACGATGTAGGCAAAAATGTTATCTCGTGGATTTATCCAATTAAAGTA
ATATATCAACGAAAATATTAAAGAAGTGATTTACGAGTTTCCTAATTTGA
AGgtatgtgaaaaaaaatttgaagaaattatgtaaaaatttttgaaaatt
aaaaaacgttggtatcaaaaaaattgcttaataaaaagaaatataaaaaa
atgctGCAGCtacaaaaaaatgtaataaaccTATAAAGTTCAGGTCAATG
CTCATAAAAGtgtgtaggtgaaatttgaaggATTTCAGAAGTGTTAGAAT
GAGAAAGGCATACAGTGTGTTCTAAAAAAGCGgacaattttttatataaa
ataggATCCTCAAAACTCATTATCTAAGCTGTTCTCCGTTCAATCAATAG
ATGTTTAATTCCAAAGATAATTTAATAGATTTTTGAAATGACAAATAggc
aagtcataaaatttggcataatttatgagagttttactttatatttaaaa
atttgtccgctttttttcGAAGCACACTGTATTTTGACATAAATTATGCA
AATTGTAAATTATGCatgttaattttcattttaaaagtgTTACTAGGAGC
GCCCACAGCTTTGGTGGGCGGAACTTACCAAGACCGTTTTGTTAATTAGA
CGGCGCGTGAAATCATTTAAAATGTTGCAAAATTAAactagaaaaaaaac
atttttaatgaaaatttagaataaacTATAATGgcaataaaactttttaa
aataataaagATAAGAGAGAGAGTTATTATATCaacaaatctttcttttt
ttccgtttcaaaataaatcatttgAAACGTCTCGACGGTGGTGTgtaaat
gcaattaaaatgccCAAATATGGTCATGTGTAGTTCTCCTCTGTTGTGTT
ATAAACCTTTTTCTCTCCTCCGCAAAGGTTCTCCAGAGTGCGTCAAGTTT
TTAATTTCGTTTTCTCATCAAATTCAACATAttcacattttcaaaacaaa
aaaaagaggaATTATTTAGTACGCCACTCAAATGCAGCAACGtgtcttgt
cttgtcttttATTGTCTATTATTTTATCTATCTCTAATCTAAGCCAATTG
AAATTCGTCAAAATGGGTCACGTGTTAAAAAACAGTCAAATGACAAACTa
ctaaccaatcaaaatcatGTGTTTTGTCACGTGTCTGTGTTGAGCCAATC
AGAAATTAGCCAACCATTCGTTTAGGCCAATGAGAGGAAGCCATTTTGAT
CACATGGTCTTCAAACAACCAATAGCGATTGAGTGacaagaaaattttcc
aaacgtCAAAAGAACGAAACAAAGTAAAGGCTATTTTAGCCTGCGttcct
ttcaaaataaatcacCATCTCAGGCTATGTGCAGCCACATCGAAAGCATG
GATAGGTTGTTGTTTGTATAAGCCGTTGCTTAGCGACGAAGGTAGGCTGG
TCGAAGGCAATCCATTGTTGTTATGGTGATTCCACGAGTTTTGATTTTGC
GCATATTGTAAA Run BLAST on NCBI transcript from alignment at sc0000417:118122..121236+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022422 ID=TCONS_00022422|Name=TCONS_00022422|organism=Clytia hemisphaerica|type=transcript|length=3115bp|location=Sequence derived from alignment at sc0000417:118122..121236+ (Clytia hemisphaerica)
CTTTACTtgtgtgaaaattttcattttgttccACTCCAAAAAAATCGATA
TTtataaaatgcaaaaaaaaaagtttaaaggtACAAGCTTTACCATTAtc
gtaaaattttaaatttattataaTATAAAAAGGAAGTGCATGGCAAGGAA
aataaaattgccaaaaattaacatttaaaaaaaattgtaattgtaaaaaa
ttaatatttcctTCTAAAGTAATCATTACCATATAATAATAAagtgttta
aatttttaaatttataagtcaaaattatttttgtaaatttatgaTTTGCA
TAGTGAGTTACATTTGTATGGGGTAAGTCTTAggcgggaattttatacac
gattagCATCCACTATTCAAGACATATAAGAGGGGATGGGTGCGTGTGTG
TAGCCTATTGAGGGATAAcctatcccagctggcacacaacgttttttcga
cgtttatctaacgttcacaacgtccatataacgttagataaacgttgaaa
caacgttgtgtgccagctgggatagaAGTATCCCGGATGAAACACAATGT
TAATTCAACGTTCATTTGACGTTTATTTAAGGCCATTgatgaacgtcgaa
acaacgttacGGGCAAAGAGAAATTCTTAGGGGAGTCGGCCTTCTGAAAA
TGCCACCACGCTCATCTAaggttaaatggacgttgtgaacatcagataaa
cgttgaaacaacggaATTGCACACAATTAAGCAACGATTTAAAtgcaaat
tttgaagaaaaaaaaacaattacacgttttgatttttatcaagAAATTAT
CTATGCCTATGTCAGgttcgcattatgcttagcattgtattgttctcaaa
caatagagccattgtttaggtaccaaaaactgagcctgcatataaTGATA
AGCGTTAAGGCCgatctccacttgcgcgcgcttcgatcgcactttatCTA
ACAATgtttccacgctattggtcaaaagaaaatgaagcaattccattggc
gccatctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttt
cgagtgcgcgctacatttttattccgtaatcttttctccaagcaaaaagg
attggagccaaaaggtgcgatcgcagcgcgcgcaagtggaggccggcctt
tatgcttatagaaaaaacaaTTAGATCGAATTATAGAACCTCTCCCTACA
TGTAGGTAAAAATATCATTGATTTCTGAGACAGAAAGGAAAGGCTAAAAA
TCGATGCTTTTGAATAGGAAATTGTGTTTTTATCAGTTCTCACAAATTAT
TATTACCAAGTATTTGGCGCATGTGAGGTGCATCTAATCAAATTTTGCAT
AATACTTAATAGATTGAGATgacttggagtttttacaagatacttcacta
attggtcatttaaagtgatagagatgacgcgttctttagaaaaagtaata
agattcttttattacatcttaacgaccaaccaaatcgaataagagcttgt
aaaaactccagcttgtcccaataGATTGTGCTAAAATCTCACGCGTCCTC
TACACGATGTAGGCAAAAATGTTATCTCGTGGATTTATCCAATTAAAGTA
ATATATCAACGAAAATATTAAAGAAGTGATTTACGAGTTTCCTAATTTGA
AGgtatgtgaaaaaaaatttgaagaaattatgtaaaaatttttgaaaatt
aaaaaacgttggtatcaaaaaaattgcttaataaaaagaaatataaaaaa
atgctGCAGCtacaaaaaaatgtaataaaccTATAAAGTTCAGGTCAATG
CTCATAAAAGtgtgtaggtgaaatttgaaggATTTCAGAAGTGTTAGAAT
GAGAAAGGCATACAGTGTGTTCTAAAAAAGCGgacaattttttatataaa
ataggATCCTCAAAACTCATTATCTAAGCTGTTCTCCGTTCAATCAATAG
ATGTTTAATTCCAAAGATAATTTAATAGATTTTTGAAATGACAAATAggc
aagtcataaaatttggcataatttatgagagttttactttatatttaaaa
atttgtccgctttttttcGAAGCACACTGTATTTTGACATAAATTATGCA
AATTGTAAATTATGCatgttaattttcattttaaaagtgTTACTAGGAGC
GCCCACAGCTTTGGTGGGCGGAACTTACCAAGACCGTTTTGTTAATTAGG
CGGCACGTGAAATCATTTaaaatgttaaatgttaaaaNATTATGTAAAAA
AGACGGCGCGTGAAATCATTTAAAATGTTGCAAAATTAAactagaaaaaa
aacatttttaatgaaaatttagaataaacTATAATGgcaataaaactttt
taaaataataaagATAAGAGAGAGAGTTATTATATCaacaaatctttctt
tttttccgtttcaaaataaatcatttgAAACGTCTCGACGGTGGTGTgta
aatgcaattaaaatgccCAAATATGGTCATGTGTAGTTCTCCTCTGTTGT
GTTATAAACCTTTTTCTCTCCTCCGCAAAGGTTCTCCAGAGTGCGTCAAG
TTTTTAATTTCGTTTTCTCATCAAATTCAACATAttcacattttcaaaac
aaaaaaaagaggaATTATTTAGTACGCCACTCAAATGCAGCAACGtgtct
tgtcttgtcttttATTGTCTATTATTTTATCTATCTCTAATCTAAGCCAA
TTGAAATTCGTCAAAATGGGTCACGTGTTAAAAAACAGTCAAATGACAAA
CTactaaccaatcaaaatcatGTGTTTTGTCACGTGTCTGTGTTGAGCCA
ATCAGAAATTAGCCAACCATTCGTTTAGGCCAATGAGAGGAAGCCATTTT
GATCACATGGTCTTCAAACAACCAATAGCGATTGAGTGacaagaaaattt
tccaaacgtCAAAAGAACGAAACAAAGTAAAGGCTATTTTAGCCTGCGtt
cctttcaaaataaatcacCATCTCAGGCTATGTGCAGCCACATCGAAAGC
ATGGATAGGTTGTTGTTTGTATAAGCCGTTGCTTAGCGACGAAGGTAGGC
TGGTCGAAGGCAATCCATTGTTGTTATGGTGATTCCACGAGTTTTGATTT
TGCGCATATTGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022422-exon-sc0000417-1491911889:118122..120320 | TCONS_00022422-exon-sc0000417-1491911889:118122..120320 | Clytia hemisphaerica | exon |
| TCONS_00022422-exon-sc0000417-1510915933:118122..120320 | TCONS_00022422-exon-sc0000417-1510915933:118122..120320 | Clytia hemisphaerica | exon |
| TCONS_00022422-exon-sc0000417-1575043694:118122..120320 | TCONS_00022422-exon-sc0000417-1575043694:118122..120320 | Clytia hemisphaerica | exon |
| TCONS_00022422-exon-sc0000417-1491911889:120374..121236 | TCONS_00022422-exon-sc0000417-1491911889:120374..121236 | Clytia hemisphaerica | exon |
| TCONS_00022422-exon-sc0000417-1510915933:120374..121236 | TCONS_00022422-exon-sc0000417-1510915933:120374..121236 | Clytia hemisphaerica | exon |
| TCONS_00022422-exon-sc0000417-1575043694:120374..121236 | TCONS_00022422-exon-sc0000417-1575043694:120374..121236 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:118122..121236 + |
Blast
The following BLAST results are available for this feature:
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