TCONS_00022407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022407
Unique NameTCONS_00022407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022407 ID=TCONS_00022407|Name=TCONS_00022407|organism=Clytia hemisphaerica|type=transcript|length=351bp
GTGGAATCTTTAAGACAAGAGTACGCTAGCTCAACATTATCTTTGGTCAA
TTCTTCGTTGAAAAGAGTAGAGAAACGGTTAAAGACCTCAATTCCAAACA
TGCTACAGACTTCAGGATTTGTAGAGGCTCTTTTCCAATCTATTTGTTTT
AAAGGATTAGGTTTGGAAGGTTTGGAAGAGCGAAGACTAAGTTTGACCTT
AGAAGATACGATGCGAAGAACAGTACTCACAGTAGCAAAGGAAGATTATG
CTCTTGAGTCCTGTATGCTATTACGCCATTTTTTCCGGAAAAGGATATAG
TCGATCTGTGCTTTATCGCCGTTTGGATATTTGAAGGTCCAGAGATGATT
A
Run BLAST on NCBI

protein sequence of TCONS_00022407-protein

>TCONS_00022407-protein ID=TCONS_00022407-protein|Name=TCONS_00022407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
VESLRQEYASSTLSLVNSSLKRVEKRLKTSIPNMLQTSGFVEALFQSICF
KGLGLEGLEERRLSLTLEDTMRRTVLTVAKEDYALESCMLLRHFFRKRI
Run BLAST on NCBI

transcript from alignment at sc0000414:1839..2189

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022407 ID=TCONS_00022407|Name=TCONS_00022407|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0000414:1839..2189 (Clytia hemisphaerica)
TAATCATCTCTGGACCTTCAAATATCCAAACGGCGATAAAGCACAGATCG
ACTATATCCTTTTCCGGAAAAAATGGCGTAATAGCATACAGGACTCAAGA
GCATAATCTTCCTTTGCTACTGTGAGTACTGTTCTTCGCATCGTATCTTC
TAAGGTCAAACTTAGTCTTCGCTCTTCCAAACCTTCCAAACCTAATCCTT
TAAAACAAATAGATTGGAAAAGAGCCTCTACAAATCCTGAAGTCTGTAGC
ATGTTTGGAATTGAGGTCTTTAACCGTTTCTCTACTCTTTTCAACGAAGA
ATTGACCAAAGATAATGTTGAGCTAGCGTACTCTTGTCTTAAAGATTCCA
C

Coding sequence (CDS) from alignment at sc0000414:1839..2189

>TCONS_00022407 ID=TCONS_00022407|Name=TCONS_00022407|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000414:1839..2189 (Clytia hemisphaerica)
CTATATCCTTTTCCGGAAAAAATGGCGTAATAGCATACAGGACTCAAGAG
CATAATCTTCCTTTGCTACTGTGAGTACTGTTCTTCGCATCGTATCTTCT
AAGGTCAAACTTAGTCTTCGCTCTTCCAAACCTTCCAAACCTAATCCTTT
AAAACAAATAGATTGGAAAAGAGCCTCTACAAATCCTGAAGTCTGTAGCA
TGTTTGGAATTGAGGTCTTTAACCGTTTCTCTACTCTTTTCAACGAAGAA
TTGACCAAAGATAATGTTGAGCTAGCGTACTCTTGTCTTAAAGATTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012564XLOC_012564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022407-exon-sc0000414-1491911889:1839..2189TCONS_00022407-exon-sc0000414-1491911889:1839..2189Clytia hemisphaericaexon
TCONS_00022407-exon-sc0000414-1510915933:1839..2189TCONS_00022407-exon-sc0000414-1510915933:1839..2189Clytia hemisphaericaexon
TCONS_00022407-exon-sc0000414-1575043694:1839..2189TCONS_00022407-exon-sc0000414-1575043694:1839..2189Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022407-proteinTCONS_00022407-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:1839..2189 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.49843	1.70545	4.24327	3.59786	1.34771	1.59747	2.76863	2.10501	1.6843	1.8255	2.53124	1.49755	2.49244	1.38049	1.70243	1.67472	0.937781	1.92239	1.06235	2.22335	1.20781	0.706954	0.57293	1.04175	4.02368	3.11223	1.71292	1.46246	1.10922	1.69519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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