TCONS_00022400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022400
Unique NameTCONS_00022400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022400 ID=TCONS_00022400|Name=TCONS_00022400|organism=Clytia hemisphaerica|type=transcript|length=1430bp
ttcattttgaagaacaaaaGGCCTCTATTGTATAGTAATTAACAAAGTAA
TTGGATTAAAAATACTCTGTTTTGTCAAGTTAGATTTAGGGATTGCTGAA
TATCTTTCCAGGCAAGCGTATTTCGTTGCTAATCATTTTCAGCTATTGTG
TTGTGGGcccgatttttttatgttttcctCATTAAATTGTCATCAATGGT
AATTTTCAAGAGATTTAGTTGAATATTTTTAGTATAAGATTATAAGATGG
TTTTTAATGAACAAGACTTTGGGAGATAATGGTTTGGACATAcgaaacat
aaaattttgaaagtaacaACAAGAATAAtgagaaattttgatttctatCA
AAGATGTTTTACGTTTTTGATATGTTtacaatttataagaacaatgcaAG
TGGCTCAGTCAAGACATGACCGAGAAGTGCAATGCGAGAAAAGTCGAATC
GATCATAATGTGACACTAGCCTCTGGTCACCATGCTGGAGTGTTTCTCAA
GGCTAACAAATCCATTGTCACCATGAAAAGATGTTTGCAACAGTGTTGTC
AAATGAAAGGGTGCGATGTAGCGTTTTTCAGTAACGGTGCATGTTATTCT
GTAAAATGTTCATCTATTGATACTTGTGCACCCACAATGAATTCTGATAA
ACGAATGATGGTGGCCATTTCGTACGTTGCTAAGCCAAAGGTCACGTCCA
AACAAGTGAGCGTTGACAAAGGCGTGGAGCGCGAAGTAACGGATAATTTG
ATCGCTGAAGTCACACGTGAAAGTCCTTTCCTTGTTGATGATGATAATTT
GGTGGACCAGAGTCCAGTACCATCCAAACATCATTCTGCATGGAGAGAAA
CTAAAGACGCCATTTTAGCGGTAATATGTGGGTGTGTAGCCGTGGCGGCG
GGCGTTGTGGGCGTGATTATGATGACACGACGCCTTGTTGAAGAAGATGA
ACATTTCCCGTTTAATGGGAACGGTTGTAGGGAACCTTTACTTGATAAAA
ATTCCACTTTTTCAAAAGACAATTTATTACCAACGATATCTGAATGCGAA
GATGAGAATTTAACAGGTGCTCTGGAAGACtgtgaacattttaaaactga
agACGAAAATTCACCGAAAGCCTTCAATGATGATCGTAGTAGAAGTGTAG
ACATTGAAACTTGTACGGACTCGCCCACTCAAACGACCGATCTTTCGGCC
AAGCTAACAACCATACGGGAAGAAGGAAAATAACACCATATTAATTCATG
GTGAATAGGAGATCAGATTAGTATTTGGTTTCTGGAAGCTCCAATGAGGT
CAGAGCTACGTCGGATTGAAACTTTGGAAATTGTGCCGTGTTAACTGAGT
TATTTTATGATGTTGACACTCACTCAGATTTTTTATACTTTGTAATTTAT
TATGTAAATAATAgactttttcgataaaat
Run BLAST on NCBI

transcript from alignment at sc0000414:232650..235417-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022400 ID=TCONS_00022400|Name=TCONS_00022400|organism=Clytia hemisphaerica|type=transcript|length=2768bp|location=Sequence derived from alignment at sc0000414:232650..235417- (Clytia hemisphaerica)
TTCATTTTGAAGAACAAAAGGCCTCTATTGTATAGTAATTAACAAAGTAA
TTGGATTAAAAATACTCTGTTTTGTCAAGTTAGATTTAGGGATTGCTGAA
TATCTTTCCAGGCAAGCGTATTTCGTTGCTAATCATTTTCAGCTATTGTG
TTGTGGGCCCGATTTTTTTATGTTTTCCTCATTAAATTGTCATCAATGGT
AATTTTCAAGAGATTTAGTTGAATATTTTTAGTATAAGATTATAAGATGG
TTTTTAATGAACAAGACTTTGGGAGATAATGGTTTGGACATACGAAACAT
AAAATTTTGAAAGTAACAACAAGAATAATGAGAAATTTTGATTTCTATCA
AAGATGTTTTACGTTTTTGATATGTTTACAATTTATAAGAACAATGCAAG
TGGCTCAGTCAAGACATGACCGAGAAGTGCAATGCGAGAAAAGTCGAATC
GATCATAATGTGACACTAGCCTCTGGTCACCATGCTGGAGTGTTTCTCAA
GGCTAACAAATCCATTGTCACCATGAAAAGATGTTTGCAACAGTGTTGTC
AAATGAAAGGGTGCGATGTAGCGTTTTTCAGTAACGGTGCATGTTATTCT
GTAAAATGTTCATCTATTGATACTTGTGCACCCACAATGAATTCTGATAA
ACGAATGATGGTGGCCATTTCGTACGTTGCTAAGCCAAAGGTCACGTCCA
AACAAGGTTGGTTTTAAAGCTTTCACCACTGGCTATAACATTTTTACACC
CTTGTATCAGTGACCCGGTGAGGTTTTAAAATCCATCGGGATGGCTATGG
AAAAATAAATTTCATTGGGTTGAATTTGAGATCTCAAAAACTCACTGGGC
TGAGAACTTTTAGAGAGTCTGGTTTTCCTAGAATTCATATGTTTTTCTTT
ATTTTGACGGGGTTGCCCTAATTAATGCAATTAATAATGCGTAAGACAAT
AAACATCCAAGTTTTGAGCGGGAGTAGAGTTTTTCAATACATTTTGGCTC
ATTATCCCACATAGCCATTTCTAATCTCAAAACAGATCGTCCATTCTGCT
CTAAAGGGATATGGTAGAAGTGACAATCTGACCTAGTTGTTCAGCCAAAA
CAATCAAGCCGTGATTCTTCTTGCTTGAAAGCGAAAACGAAAGCGACTTG
GTTTTAATGTTTAAGTTTGTGATTGGCTATTGTGCTATTGTTTAGTTTTA
ACCAATCACAGCACTCAAAAGCTCATCCAAATCGGGATGAAAAAGGTCAT
TGGGAATGTACAAATCGGGATGAAAAAGGTCAAAGCGGTGTCCCAACCTG
GGCAGATTCTCTTACGAAGACTAAGAATTCCGATTACTGAGAGAAACTTG
TTTGGAAATACCACTTGAAAGTAATGATCTTATCTTTTTTTCAGTGAGCG
TTGACAAAGGCGTGGAGCGCGAAGTAACGGATAATTTGATCGCTGAAGTC
ACACGTGAAAGTCCTTTCCTTGTTGATGATGATAATTTGGTGGACCAGGT
ATGTTCTCTTTCAAAGAATACAAAAGGCTGGACTCAATTTCTAATGAGCA
ATAGGCGCCGAAATATATTGGCACTTTTGGGTATTTCAACGTTTATTCAG
AATTTAAAGATCGGGCGAGAATTGCAGTTTCAGTACTTCCACTTTGTTTT
ATTAGATTTTTCGATTTGGGAGGGGTTAAGTGGCTTCCAGGCTATATTCT
CAGCCTTATTGGAACATTTTTGAGCTTTTAGATCCTGAGATCATACGGTC
TTAAGTTTTAAAGTCTCATGTTAAAACTTAGAGATAAAACTCTACTTTCC
AACCGTACTTTAAAGCACTTAAAAATCACTTGCGGTTTTCAAATTTGAGG
GAATTCCTCTTTTGTGCCAAATATTACGGTGGGGATTGAATGTTGTTTTG
TTGATCTTTTTGAATATTGAAGAATAGTTGACCTCGTTATCCGATATGTT
CATGATTTTGAGATTTTGGACTTATCATGTACTCGCCGAAAAAAAGAAGT
GACACAGTGAAACTCTCGGCTATGACTTCTCTGAGAAAGATGGAGTAATA
GAGCAATATAGGGAATAAAATACTGTCTTATATGAGTGAAAATAGTACCC
TTGACGAATGCAAAATAATTATGTTTTGATTTATTACATTACCTCTAGAG
TCCAGTACCATCCAAACATCATTCTGCATGGAGAGAAACTAAAGACGCCA
TTTTAGCGGTAATATGTGGGTGTGTAGCCGTGGCGGCGGGCGTTGTGGGC
GTGATTATGATGACACGACGCCTTGTTGAAGAAGATGAACATTTCCCGTT
TAATGGGAACGGTTGTAGGGAACCTTTACTTGATAAAAATTCCACTTTTT
CAAAAGACAATTTATTACCAACGATATCTGAATGCGAAGATGAGAATTTA
ACAGGTGCTCTGGAAGACTGTGAACATTTTAAAACTGAAGACGAAAATTC
ACCGAAAGCCTTCAATGATGATCGTAGTAGAAGTGTAGACATTGAAACTT
GTACGGACTCGCCCACTCAAACGACCGATCTTTCGGCCAAGCTAACAACC
ATACGGGAAGAAGGAAAATAACACCATATTAATTCATGGTGAATAGGAGA
TCAGATTAGTATTTGGTTTCTGGAAGCTCCAATGAGGTCAGAGCTACGTC
GGATTGAAACTTTGGAAATTGTGCCGTGTTAACTGAGTTATTTTATGATG
TTGACACTCACTCAGATTTTTTATACTTTGTAATTTATTATGTAAATAAT
AGACTTTTTCGATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012561XLOC_012561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022400-exon-sc0000414-1575043694:234712..235417TCONS_00022400-exon-sc0000414-1575043694:234712..235417Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1575043694:233920..234023TCONS_00022400-exon-sc0000414-1575043694:233920..234023Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1575043694:232650..233269TCONS_00022400-exon-sc0000414-1575043694:232650..233269Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1510915933:234712..235417TCONS_00022400-exon-sc0000414-1510915933:234712..235417Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1510915933:233920..234023TCONS_00022400-exon-sc0000414-1510915933:233920..234023Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1510915933:232650..233269TCONS_00022400-exon-sc0000414-1510915933:232650..233269Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1491911889:234712..235417TCONS_00022400-exon-sc0000414-1491911889:234712..235417Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1491911889:233920..234023TCONS_00022400-exon-sc0000414-1491911889:233920..234023Clytia hemisphaericaexon
TCONS_00022400-exon-sc0000414-1491911889:232650..233269TCONS_00022400-exon-sc0000414-1491911889:232650..233269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:232650..235417 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0845344	0	0.108228	0.290641	0	3.58713	4.36603	4.00897	2.68548	4.57099	4.38889	8.5263	7.3677	6.43992	14.6284	9.06072	8.48082	0.157894	0	7.13574	6.92335	5.12826	5.70896	4.12653	4.11323	2.98876	3.37888	0.163021	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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