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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022382 ID=TCONS_00022382|Name=TCONS_00022382|organism=Clytia hemisphaerica|type=transcript|length=1859bp
tttttgtttgataatGAAATTATTTCTGCGTCACGTGACGTTGACTTTCT
TTTAATAAGAAGTCTGATGGACAGAACGAAGGATGATTCATTGCAATAGA
CCATGAACAACAGACTTCGAGGTTTCATGTTGAACGATAACGATTTTGag
cttgttgtttttttgtgaatAAAAGAAGAGAAGACACACAGAAATTTGAG
ACCAAGTCAATTACAAGCttttaacaacaacaacaacaaagatggtagcC
AACCAGCAGACCACACCAGCACCAGTCATGGTCGAACCAGCAAAATCATA
TTTCACTACTACTTTCATCAAAATGTTTTCAGCCGGAACAGCCGCTTCTA
TTGCTGAAATAACCACTATACCCATCGATACTGCTAAAGTGAGATTACAG
aTCCAAGGAGAAAGCTCCACCAGTATCGCCGAAGCAAGGTCAAGTCTCAA
ATATCGTGGTATGATACATTGTATTTTTACCATTTCTAAAGAAGAAGGCT
TCAGTTCTCTTTACCGTGGTCTTGTGCCTGGAATCCAACGTCAGTATTGT
TTCTGCGGAGTACGTATCGGTCTTTACGACCACGTCCGCAAAATGTACGG
AGATACAAGTCAAGGAAAACCAAAATTATTGGTCAAAATCGCTGCAAGTA
TCACTACGGCTTCTTCCGCTGTTTTGATGTTCCAGCCTACGGAAGTGGTT
AAGATCCGTATGCAAGCTGCCGGAAAAAAATTGCGATACACGGGTACTTT
AAATGCTTATCAAACGATTTTCCGTCAAGAAGGATTAAAAGGACTATGGA
GAGGGACCTCCACTAATGTAACACGTTTGAGTTTGGTCAATTGCACTGAG
ATTGTGATTTATGATTACATTAAGTCGTACGCATTATATAAGAATTGGAT
GCAAGATGGAGTTCCGCTTCACTTCGTGTCCGCCCTTGGCGCTGGCTTCA
TCACCGTCATGGTGGCGTCGCCGGTAGATGTGGTCAAGACCCGATATATG
AATTCCGCCACTGGATCATACAAAAACCCAATCCATTGCGCCGTCTCGCT
GTTGAAGAATAACGGAGTTACTGCATTCTATAAAGGATTTATCCCATCTT
TCACACGTCTCGGTTCATGGACGATCGTTTTCTTCTTATCCTATGAGCAA
ATCAAGAAGTATTTGAATGCTTGAGAAGTAGAATGACTGAATGATACACG
AGAACACAACTTTGCAAATGACTTGACTATAATGGCAGAGCAGTTCGCTG
GTGAAGACACTGTTGGGTTGAAGTCAGGGAGAAGAGTATTAGCAGGCATT
GGGTTCGTTAATATGCAACATCCgttaaaaacatataaaaaagaaatccc
TATCGCGAATTAGTCATTTGGTAATAAGCCTTGGTGATGGCTTGGAAtct
gaatttgagaaaaaggtGTGAACAATTttaatataaatataaaaacgaAA
TAAAATGTATTTTCAGTGCCCTGCTATGATTAAGCACGAATATATTTTTG
ATCTTGTGAGGGTATTATCTTCAATAAAGCTGGAATTTTCCAACtcgtga
cgtaatcttttctaaGCACCAAAATTACCTCGCTAAAGTTTGAGGAAAGA
AACCATTAGTTACGTCATAAAGCTTTCCGACACCGAGTTTATATATGGTG
CTTGTAGTCATATTGCTTTgtataactttttaactttttgggtgTTTTAA
ATCCAAgataaatttattattttatggTAAAACTTTTTCTATGATAATAC
CTTTTGTATTTATTGTCATTTGTGTCTTGATCATTTGTCTTGATGAAGAT
AATAGATTAGTATAACACAATCTTTCTGTGGCTGTGTATTTATAATGAGA
ATTTCGTGG Run BLAST on NCBI transcript from alignment at sc0000414:226219..232208+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022382 ID=TCONS_00022382|Name=TCONS_00022382|organism=Clytia hemisphaerica|type=transcript|length=5990bp|location=Sequence derived from alignment at sc0000414:226219..232208+ (Clytia hemisphaerica)
tttttgtttgataatGAAATTATTTCTGCGTCACGTGACGTTGACTTTCT
TTTAATAAGAAGTCTGATGGACAGAACGAAGGATGATTCATTGCAATAGA
CCATGAACAACAGACTTCGAGGTTTCATGTTGAACGATAACGATTTTGag
cttgttgtttttttgtgaatAAAAGAAGAGAAGACACACAGAAATTTGAG
ACCAAGTCAATTACAAGGTTGgatcattttttaatttgatatctTTTAAG
TCTATAGGTCTATGGGTCACCTTTGAGTCATGTAATTATTCCAGGTAAAA
AACATGAGAATCGCAGTAGTTTTTGTTCAGAGGTCAAATCAAATGAATAA
AATGGTTATAGAAATTTAGAAGTAGTGACATCTCATTTTTTACAGCATTA
GATGATTTAGGGCCGTCGAGCACCATTACTTTTTTTCTAATCCAGGGACT
GGTTTCGAATCTAGGGGACAGTAAGGAGATCAGTAGATTTGTTTTACTGT
TTTGTTTTACTGTTTTACTGAAAGTTCTGGACTATTTGGGAACTAAGTTC
AGCATTGTCCAAGAAAGCTTCtacaaaaatcaaattcaactttgaaaaat
gcGATCGACAAAAACTGACAACATGGCCTTTTCTCTAAGTTCCAGGACTa
gaatccaaaagttcaagttGAAAAAAGTGGAAGTGTATGGGTAGCAAATG
TTTTCTAATTTCTTCGAGAGAAGTTATACCATTGCAACgaattttattac
aaaacaCTGTTTATTAATATCGAAACTTCATCAAAATTCCTTGTTTTTCA
TTATAATAAATGAAGTTATCAAAGttctataaaaatatatatttcacAAC
ATTTGAACGCATTAGAGGGCTTAGTAAGAACTTGAATGAGGCTTATGTTT
TGAAGTAAAAATGGTGTGCAAATGACGTCAACAGCGACGGAGAGATCGAT
TTGGGACACTGAGCGCTTGATAATGGTCCTTGAGGAACTTCTATTTTGTT
ACTAGTGAAATGTTGGCAAACCAATGGTGTGAGATAAAATGGGGCTTTCA
TGTTTATAAACGACGTGGGAAATCATAGGATTTTCACAAGATTTCGAAAG
AATAGCACCATCATTTGTGAAAATGGGGTAAAACTAAAATTATtgacaaa
tatttttgtctttGTCAATCGATAACTAGCTTATTTGCAAGTTCTTTTCA
ACGTACTTCACAATAAACGCTTTTATATCATTTTAAAATACCAtctcaaa
aacattattatcaATGCTAAAGTGATAATGCAAAATTTTTATATACGTCA
GGAAGTGTATAATTATCTCCTAATATCCTGGATCATAGGTTAATTAGAGT
TAATGAGTTAATCAGAAACACACCTCTAGTTCACCCTTTTCTACAACTGA
GCTATTAAATCACAACATGaacgaaaaaagtttaaaaagactGCTTAGTA
ACGCAAATATTGTTTTGATAGCAAAAAACTTATATTTTGCATTATCAGTA
CGATTACAGATTACAAGCAATTTATTGGGTCTTGACTTTCCGCTTCAAAA
TCATTTAGTTGTTTGCAGATAGATCTGGATAGATTTTGATTTATGTGATA
TTCTGTCCAGGGAGGTCAGTGGAAAGGCCTTACGTAAGATAAATAAACTT
TATCGAAGGCCATCGGGTACTACTGAGGTTTCTCcgtgtttttattttaa
aaaatgcattcggggtggaaaatttctttgatttatgTAATAggtgaatt
ctattgtttcagacTCAAAGATAAGGTCGGGATTCCAAAGTTTTAATGCT
TCTGCTAGTAGGAATGAAACCATTTTTTGTTTCCAATTTTTACTGGCGTA
TGGCCGATACTTTCGTCAGAGAAGGGGTCCCATACGGTTGTGACAAGGGT
CAGATCTGAGTTTGAACCATGAACTTTACTTAGGAGGCGTATTGAAGGTT
TGTTAGAGGTACATACTTTCCTATTTGAATGCTTCATACTCTTTATTTGT
CGCTGTGAAATATTATgcctgaattttctttttccgGAAAATAACAAACT
CCTGAATTTGCGTGAAAAAATAAATGTCAATATTAGCAACAGCTATCATT
TAAAATCTAAGGATTGCATACTTGACATGTCATACGTGATGGAGATTATT
TTAGAATATAAATGTCTTGGGTTCTGGGTGAAATCGGCAAGTTTTATCTC
GAAATTGGTAATTTTAACTTAACTAATAACTAACTTCACTTTAAGATCTT
GAGAGGGGCTCAATCAGCCGTATAAGCAATAATCTATTATAGTTCTTTCa
agttttgagcaaaaaaattagCTGTAATAAAGCTTGATATTCTGACATTC
TAAGAGGGCTTTCTGAGAACTGACAAAAAGTAGAATGCTGAATCGCTAGG
TTGTTTATAATTTGGTGACTTAGCTTTCGTTTTCGTGTtataaaagtaaa
aagaatTCACCAACAAACGAGATGACTTCTCTGAAAAAATATCCCTTTCA
AAACGCTACAAGACTTTCTCTTCCGTTTTTGTTCAAGATAAACTAACAAT
CAACGTCAAACCGAAAGTTTATGTTACAGAAACTAACATTTCGACTTCCT
CCCTGTTTTTCTAGCttttaacaacaacaacaacaaagatggtagcCAAC
CAGCAGACCACACCAGCACCAGTCATGGTCGAACCAGCAAAATCATATTT
CACTACTACTTTCATCAAAATGTTTTCAGCCGGAACAGCCGCTTCTATTG
CTGAAATAACCACTATACCCATCGATACTGCTAAAGTGAGATTACAGGTA
GGTCTCAGCTTTactttacacccctgtctcacactGATCTTCTCTTTACT
AAATGTAGCTAACCAACATTGTAtgaagtaaaaatctttcaaataggTGG
GGGACCTTGATGCTGACATATTGCTTAACCTTTTTATAACCTATGTGTTT
CATACTGGCAAGAATCTCCTATATCTCCCAACATCTAATCCTTTTCTTCA
AACTTTGACTCTTAATCTAATAAATTAGCCAAACCATATTAAACTAACAC
AtgtgtatttttattttacatagaTCCAAGGAGAAAGCTCCACCAGTATC
GCCGAAGCAAGGTCAAGTCTCAAATATCGTGGTATGATACATTGTATTTT
TACCATTTCTAAAGAAGAAGGCTTCAGTTCTCTTTACCGTGGTCTTGTGC
CTGGAATCCAACGTCAGTATTGTTTCTGCGGAGTACGTATCGGTCTTTAC
GACCACGTCCGCAAAATGTACGGAGATACAAGTCAAGGAAAACCAAAATT
ATTGGTCAAAATCGCTGCAAGTATCACTACGGCTTCTTCCGCTGTTTTGA
TGTTCCAGCCTACGGAAGTGGTTAAGATCCGTATGCAAGCTGCCGGAAAA
AAATTGCGATACACGGGTACTTTAAATGCTTATCAAACGATTTTCCGTCA
AGAAGGATTAAAAGGACTATGGAGAGGGACCTCCACTAATGTAACACGTT
TGAGTTTGGTCAATTGCACTGAGATTGTGATTTATGATTACATTAAGTCG
TACGCATTATATAAGAATTGGATGCAAGATGGAGTTCCGCTTCACTTCGT
GTCCGCCCTTGGCGCTGGCTTCATCACCGTCATGGTGGCGTCGCCGGTAG
ATGTGGTCAAGACCCGATATATGAATTCCGCCACTGGATCATACAAAAAC
CCAATCCATTGCGCCGTCTCGCTGTTGAAGAATAACGGAGTTACTGCATT
CTATAAAGGGTGAGTTggactttctttctttttcgtgTAAATAATGTTGg
ggaaattcaattttttaatcaattttctcttTTGCACTCTGGACTCAAAA
TAGTTTGAATAAGTAGACTGCTTCGTTGCCGCAGCAAAGTATTTGTGAAA
TATCTAGATTATAAGTTGATTTGATGCGGTTTAATGATTATAATTTATCA
GGAAACACATTAAAGACTCGTCAGAATGTCCTGTGGTTTTGAGTGTTGAT
AAATTTACAAAGTCAAATTTGATCTCAAAGTGGTTCGATTCGTACATTCG
TCGCGCAAAAGAAAGTGAACTAGTGAAAAATTATGTGTTTGAACTTTGTA
CTGATTCTGTCAACACAAGGACATGGCTCAAACATACGGAAGAAAACCAG
CGTAGGATCAATAAACAGTAAAccataaagaaaacaaaaacaaataacCA
CAAAAGAGAACCCGGTCAATCGACACTCCATGTTCGTGACGCAAAACAAC
CTATACTATGCAAGTACTGGGGAAAATTTGCGAACAAACCGTTTTGATAA
AAGCTTAGTCACGAATATGTGCTTTTTCGtacatcttttttataagaaca
agctatatgAGCATTAGGCTTCGAGTACCAACAAATTTAGGAACATGTTT
AAAGAACATTTATGTCCCCATTTATAGGCTTTGCATAATCTAAAACATGA
AACTGAAAGATAAAgtcaaaattactttttaagaTACTAAATTGGATTAA
AATGTCTGATAGCTTTCTTGTGCAGTAACCCCGGAGTAACCCTGGGCGAG
GCAAAAAGCAATACTCTTTCTAATCTACTTTGTACTGTTATTGTCTGCCT
TAAGATTANTTGGATTAAAATGTGTGATAGCTTTCTTGTGCAGTAACCCC
GGAGTAACCCTGGGCGAGGCAAAAAGCAATACTCTTTCTAATCTACTTTG
CACTGTTATTGTCTGCCTTAAGATTAAGCAGAGCTAAAAATAACGATTTT
TTGATTAAATTCAATTACCTTATGACATGTTGTGAGAATACTAGTACACT
TTCAAAAGGCGAGTGTATTATGATAACACTTGACCTCTAGCTTGAGATTA
CACGTGACCTCTAGGCTTGTCGATTTGTTTCCAAAGTttccaaagtttca
aaaaggTACTTCCCGTCTTGAATGAGAATTGGCAATAGTAAAACAATAAA
CATTGCAGCTGCCTTAATAATTGAGCAATCCGAATAGTACTTTTGGCAGC
ATATACAGGGGTTGGTCCCTAACACAAAGGATGcctgaaaaaagtagaac
atcTTAATATCTTTTTGGGATATTCAGTCCGATTCAATGTGAATTTATGC
TGCAGGGTGCATTAAAAGCACATCTCCCTGGTTGACAAGGGTAGCAACCC
TGTCTGTCGaggtaacttttattttagtgaaatcttCATCTTACCTGATT
AATTTTCTTTCGTTTAGATTTATCCCATCTTTCACACGTCTCGGTTCATG
GACGATCGTTTTCTTCTTATCCTATGAGCAAATCAAGAAGTATTTGAATG
CTTGAGAAGTAGAATGACTGAATGATACACGAGAACACAACTTTGCAAAT
GACTTGACTATAATGGCAGAGCAGTTCGCTGGTGAAGACACTGTTGGGTT
GAAGTCAGGGAGAAGAGTATTAGCAGGCATTGGGTTCGTTAATATGCAAC
ATCCgttaaaaacatataaaaaagaaatcccTATCGCGAATTAGTCATTT
GGTAATAAGCCTTGGTGATGGCTTGGAAtctgaatttgagaaaaaggtGT
GAACAATTttaatataaatataaaaacgaAATAAAATGTATTTTCAGTGC
CCTGCTATGATTAAGCACGAATATATTTTTGATCTTGTGAGGGTATTATC
TTCAATAAAGCTGGAATTTTCCAACtcgtgacgtaatcttttctaaGCAC
CAAAATTACCTCGCTAAAGTTTGAGGAAAGAAACCATTAGTTACGTCATA
AAGCTTTCCGACACCGAGTTTATATATGGTGCTTGTAGTCATATTGCTTT
gtataactttttaactttttgggtgTTTTAAATCCAAgataaatttatta
ttttatggTAAAACTTTTTCTATGATAATACCTTTTGTATTTATTGTCAT
TTGTGTCTTGATCATTTGTCTTGATGAAGATAATAGATTAGTATAACACA
ATCTTTCTGTGGCTGTGTATTTATAATGAGAATTTCGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00022382-exon-sc0000414-1491911889:226219..226435 | TCONS_00022382-exon-sc0000414-1491911889:226219..226435 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1510915933:226219..226435 | TCONS_00022382-exon-sc0000414-1510915933:226219..226435 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1575043694:226219..226435 | TCONS_00022382-exon-sc0000414-1575043694:226219..226435 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1491911889:228833..229015 | TCONS_00022382-exon-sc0000414-1491911889:228833..229015 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1510915933:228833..229015 | TCONS_00022382-exon-sc0000414-1510915933:228833..229015 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1575043694:228833..229015 | TCONS_00022382-exon-sc0000414-1575043694:228833..229015 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1491911889:229292..229977 | TCONS_00022382-exon-sc0000414-1491911889:229292..229977 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1510915933:229292..229977 | TCONS_00022382-exon-sc0000414-1510915933:229292..229977 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1575043694:229292..229977 | TCONS_00022382-exon-sc0000414-1575043694:229292..229977 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1491911889:231436..232208 | TCONS_00022382-exon-sc0000414-1491911889:231436..232208 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1510915933:231436..232208 | TCONS_00022382-exon-sc0000414-1510915933:231436..232208 | Clytia hemisphaerica | exon |
| TCONS_00022382-exon-sc0000414-1575043694:231436..232208 | TCONS_00022382-exon-sc0000414-1575043694:231436..232208 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:226219..232208 + |
Blast
BLAST of TCONS_00022382 vs. Swiss-Prot (Human)
Match: UCP2 (Mitochondrial uncoupling protein 2 OS=Homo sapiens GN=UCP2 PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 1.219e-97 Identity = 157/291 (53.95%), Postives = 201/291 (69.07%), Query Frame = 2
Query: 308 TTFIKMFSAGTAASIAEITTIPIDTAKVRLQIQGESSTSIAEARSSLKYRGMIHCIFTISKEEGFSSLYRGLVPGIQRQYCFCGVRIGLYDHVRKMYGDTSQGKPKLLVKXXXXXXXXXXXVLMFQPTEVVKIRMQA---AGKKLRYTGTLNAYQTIFRQEGLKGLWRGTSTNVTRLSLVNCTEIVIYDYIKSYALYKNWMQDGVPLHFVSALGAGFITVMVASPVDVVKTRYMNSATGSYKNPIHCAVSLLKNNGVTAFYKGFIPSFTRLGSWTIVFFLSYEQIKKYLNA 1171
T +K AGTAA IA++ T P+DTAKVRLQIQGES + A +S +YRG++ I T+ + EG SLY GLV G+QRQ F VRIGLYD V++ Y S+ + ++ A TT + AV + QPT+VVK+R QA AG RY T+NAY+TI R+EG +GLW+GTS NV R ++VNC E+V YD IK L N M D +P HF SA GAGF T ++ASPVDVVKTRYMNSA G Y + HCA+++L+ G AFYKGF+PSF RLGSW +V F++YEQ+K+ L A
Sbjct: 12 TATVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGPV-RATASAQYRGVMGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HASIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVNAYKTIAREEGFRGLWKGTSPNVARNAIVNCAELVTYDLIKDALLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYSSAGHCALTMLQKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 300
The following BLAST results are available for this feature:
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