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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022371 ID=TCONS_00022371|Name=TCONS_00022371|organism=Clytia hemisphaerica|type=transcript|length=5232bpRun BLAST on NCBI transcript from alignment at sc0000414:124127..154953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022371 ID=TCONS_00022371|Name=TCONS_00022371|organism=Clytia hemisphaerica|type=transcript|length=30827bp|location=Sequence derived from alignment at sc0000414:124127..154953+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022371 vs. Swiss-Prot (Human)
Match: HELZ (Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ PE=1 SV=2) HSP 1 Score: 339.732 bits (870), Expect = 2.611e-94 Identity = 239/737 (32.43%), Postives = 378/737 (51.29%), Query Frame = 2
Query: 860 KVLVQFKAEKVGNYGQELIFDFGGYPKVVKRIGVQVENEESLTQFMKFDPK-----KEENNELGWRKNYKIKPFNSLQKDCDQGEIKYPLPTNIENLVLYDAFKHLDIRLTKSNYRQRLHTLLHIEEYQRRADLQCMTFHVEDFVVC---LSEVKSRRMDCKTAAIELNDVVLELLTKLVGKSGKALLRING-YATPV-------RVFSEPIVYEVIVQNIVNGKLILEMNDQCFSIVKKSP-IPVDIDVCFCLIDV-FQSMHSAVENV-NLDLLFPNMTLSKSLPES--RKSLNMKDEELSVDQKHAIDVIMRPVV--RAPVILLGPFGAGKTMTIACCIDRILSQADTRNKILLCTHSNSAADHYIEEYFHPKHQTSKSPYANQRNVPLRINWEHRYTSSVSDKVLTYCLQDLNTGLFASPKKEDLDKANIVICTLVTSESMYKLNLPKNYFTHIFIDEAAQAMEVEALVPLLMASPHTKIVLAGDHLQMGESLSSLTAKNLGLEKSLLERLFEYYPFDLEYKLKLLENFRSYKEIVDLSSHLFYEDSLIC-NKQRSDDVPFPVEFHGTEGEE-NLSNETPSYENMDEAFKILELIQQISTEENKDYKVELSSICVVAFYPAQVRRIRKVLRKNQLYPVRVESVNNIQGLEFDILLISTVRTYCNSTFNDESLSK------------DMGFFTNPKLLNTAITRARYRVFFVGDARALCTIGECKPCWKFIMRYC 2959
KV + F E G + Q ++FDFG P +++R+ + + E L M + K ++ +++ L+K I+Y +P + + L LD LTKSNY+ RLH LL+IEE + ++ V+ ++ L+ V + + + E L++ + ++N Y PV ++ VYE ++ + L ++ +C + P +++ F L + MH A++ + + +LFP+++++ ++P S R+ D L+ QK A+ I P+ PV+++GP+G GKT T+A + IL Q +TR IL+CTHSNSAAD YI++Y HP + N + PLR+ + +R+ +V V YCL F P+KED+ K +V+ TL TS+ + +L+L +FTHI +DEAAQAME E ++PL +A+ +T+IVLAGDH+Q+ + S A+ L SLL+RL+E+YP + ++ L EN+RS++ I++ +S LFYE L+ KQ + +P+ F GE+ N T Y N + + + + K++ SI VV Y QV RIR LRK +L V VE V N+QG +F +L +STVRT + K D GF +N KLLNTAITRA+ V VGD ALC+IG C+ W+ + C
Sbjct: 348 KVGIAFNTEIFGTFRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNETTDLEKSL---LIRYQIPLSADQLFTQSV---LDKSLTKSNYQSRLHDLLYIEEIAQYKEISKFNLKVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVPKQKLVQTQGTKEKVYEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETR--ILICTHSNSAADLYIKDYLHPYVEA-----GNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALC 1071 The following BLAST results are available for this feature:
BLAST of TCONS_00022371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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