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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022369 ID=TCONS_00022369|Name=TCONS_00022369|organism=Clytia hemisphaerica|type=transcript|length=2477bpRun BLAST on NCBI protein sequence of TCONS_00022369-protein >TCONS_00022369-protein ID=TCONS_00022369-protein|Name=TCONS_00022369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp SKAHKNQMESFCEQTIQILCRFVEDAVIFIDDASCECLHWSGGFKKLLEARun BLAST on NCBI transcript from alignment at sc0000414:100065..117036+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022369 ID=TCONS_00022369|Name=TCONS_00022369|organism=Clytia hemisphaerica|type=transcript|length=16972bp|location=Sequence derived from alignment at sc0000414:100065..117036+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:100065..117036+ >TCONS_00022369 ID=TCONS_00022369|Name=TCONS_00022369|organism=Clytia hemisphaerica|type=CDS|length=33966bp|location=Sequence derived from alignment at sc0000414:100065..117036+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022369 vs. Swiss-Prot (Human)
Match: SCFD2 (Sec1 family domain-containing protein 2 OS=Homo sapiens GN=SCFD2 PE=1 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 9.075e-95 Identity = 217/684 (31.73%), Postives = 355/684 (51.90%), Query Frame = 3
Query: 30 SFCEQTIQILCRFVEDAVIFIDDASCECLHWSGGFKKLLEA-GALDVRDIKHTKECLESEAK---AVFVVSTPLLGQVSKYVKRIVKSSDFSQCIVISTISSE----ANDFIG------RGQNFPAFEYYTRQLKLWIQNELASVQIVHLPLFACNLTPNVFITSPNSNLFPVLSSDVARLQGFLHSKGDKRMFNNLGDVDFNFLPHNIQCNIKMLTSSMTTMFEAMQINEDCYSVGHFSRLVANDLANMPDPKGRRKAATKRASVVFMDRTLDLVAPISHTSDSVFGTIYEILPRLKNHNNDVAVDMSSLFAPGNITNE----TLFPGSLAHYGDEEVQKLFTYFIRKTRKECLSYICERVEAFLKKESITIVEPDESSKYNINRLKTLLELIRNNQSILKKYRGFLQCSMALLNALSDEENEHLDELLSAEKGILLEMGEENTSP-FTQVMNML---TNSSKQRFSVVDALMFCLFIYSAENEVS---NLSPGDEETIKEVMINLLMDGSHKEXXXXXXXXXXSSERQI--RTRIA--DVFERLRVISQARREMKKLTNV-IGRDSMGVVRYEALVKQIIEQIFDGTKSELEDVEFRSHGIKDFLKTGFGFFMNVTKPRPDDHPLLILYVIGGITWHEVKTIQETLEKTKPNTQVLIGSTRIITPSEILEQVLCTENLFVDV 1991
SF +Q + + V+ AV+++D A E LHW G +LLEA G D + + + AK AVFV+S L G+ + ++ I+ S F C+V++T+S AN GQ P FE +L W+ N + ++ H+PL + P+ +T ++LFP+L DV L ++ DKR +LGDVD L + I+ L S ++++ E + + E+C++VG S+++A DLAN K R+K A RASVVF+DRTLDL + H D++ I LP+L H NDV V+M +L A T E + PG L+ D + L+ + KE + + + +E++ I + +L + ++L +NN L + G LQ +A L + D L+ E+ +L +GE S Q++ M+ T + + +S + L+ ++IYS E++ +L EE +K+ + + + S LL + D DSS +++IA ++F LR I+ AR +K+ +V + + Y+ L+KQ++E+IF + + D+E S G+ D LKTGF FM V++P P D+PLLIL+V+GG+T EVK +++ + KP TQV++ STR++ P I E + T+ L D+
Sbjct: 8 SFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFEPDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPAAAAAEMEGQQ-PVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQDVHLLNS---ARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVGSLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQLPGHTNDVMVNMIALTALH--TEEENYNVVAPGCLSQSSDTTAKALWEALLNTKHKEAVMEVRRHLVEAASRENLPIKM--SMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSPEELLILLIYIYSVTGELTVDKDLCEA-EEKVKKALAQVFCEESGLSPLLQKITDWDSSINLTFHKSKIAVDELFTSLRDIAGARSLLKQFKSVYVPGNHTHQASYKPLLKQVVEEIFHPERPDSVDIEHMSSGLTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKPLNIPELLFATDRLHPDL 682 The following BLAST results are available for this feature:
BLAST of TCONS_00022369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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