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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022294 ID=TCONS_00022294|Name=TCONS_00022294|organism=Clytia hemisphaerica|type=transcript|length=1469bp
cTTGCTCAAGCAATCAATATCATATCACAAGGGTCCTGTGGCTGGTCACC
CAGTTCCCATGTGCACCTGATCAACAGATCAGGGCCCTGTACTGTTTTCA
TACCTACTTTTTTCCCAATCTCTGGCTTGCCGATATAAAGACGCTGACAT
GTCACAAAATCATCAGCACTTAGACAAACAATGACGTGTATCTGAAAACT
TGATGGAAACCTGGAAACGAGCAATTGCTGGTCTTGTTGAAAGTGCTCCA
AACGATACCATCAACAATTGTCTACGGATTTATAACCAAGAAACACCAAC
TAGCGATCAATATCAAAGCACTCAAATCACGTCGCAAACAAATGGTCATT
GATACCCTTAACTTTCTAATGCCACCCCCTTCATTACTCTCCGACAAGGT
GACTAAAGATGAtctaattCACCTTTTATGCTTGAAAATCAAGAATTTCT
TCCCAGACGTAAGCCAGATTTGTAAAGCGTCGTATTCCTTCAAACTCAAT
GACAAACCACTCATAAGTTGAGGGGCATGTGGTCAAGAAGTGCATCGACT
GTGCTATCTTGATCTTTTAAGGAGTATGAGCCTTGTGAACGAAAAGAGGA
ATAACGCCACCTTATCTACAAAATCCCTGGCCTTTACTATTTTTGTCCGT
CTTGCCAAGATGAATAACCATCAATTTCCCTCATGTTCCAAATGATTAAA
CGGAAACCCTACCGTATGAAAAATCTTCAACTACAGTATCTCCAACTCAA
ATAACAGAGGCTGCTGAATCTACAGAAAATCAGATCCTAAACACTCCAAA
GCGTACCCTCCCACCAATTCCATCCACTCCAAAGGAGTGCCTTTTGGTCG
ACGAACAAAAAACGAAACACTTGAGGGAATAGTAAAAACTAactttttga
agataaaacGCCAACGAGAATGATGCAACATTGTCTTCTGAAAATACAAC
AGACAAAGAAAATGACTCTGATGAAATCCCAGTTTGCAATTTCTACAAAA
AGGGGAAACATGATATCAAGGGCAAGAATTGTCGATTCAAACATCCAAAA
ATGTGCGCCATTACTGAAACATGGTAACAAATCTCCAATAGGATTGAGTG
CTGGTACCAATTGTACCATGTTTTACCCTCGTATGTGTTCGTCCTCAATC
ACAAAAGGGAAATGCTTCAACCTTGATTGTACCTTCACCCATGTCAAAGG
GACAAATCTCAACCAATCCAATAACCAAGTCAACAATACCCAACAAACAC
acgattttctaaaaattctgGACAATTCTCGGACGGAAATGATGGCAATG
ATAACCAACAACCTGGCTGTAAGAACACTTCAGCAACCAATTCAAACAAC
ACGGCAAATACATCTACACAATCTCCTACAACATTTCCAAGACATAAGAC
ATTGTTCAAATGACATACTTCTCTTATGTGAGTATGCATGGTTTATGCCC
ACAAACCACCCCTTCGTCA Run BLAST on NCBI protein sequence of TCONS_00022294-protein >TCONS_00022294-protein ID=TCONS_00022294-protein|Name=TCONS_00022294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MMQHCLLKIQQTKKMTLMKSQFAISTKRGNMISRARIVDSNIQKCAPLLK
HGNKSPIGLSAGTNCTMFYPRMCSSSITKGKCFNLDCTFTHVKGTNLNQS
NNQVNNTQQTHDFLKILDNSRTEMMAMITNNLAVRTLQQPIQTTRQIHLH
NLLQHFQDIRHCSNDILLLCEYAWFMPTNHPFV Run BLAST on NCBI transcript from alignment at sc0000411:69242..70941+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022294 ID=TCONS_00022294|Name=TCONS_00022294|organism=Clytia hemisphaerica|type=transcript|length=1700bp|location=Sequence derived from alignment at sc0000411:69242..70941+ (Clytia hemisphaerica)
cTTGCTCAAGCAATCAATATCATATCACAAGGGTCCTGTGGCTGGTCACC
CAGTTCCCATGTGCACCTGATCAACAGATCAGGGCCCTGTACTGTTTTCA
TACCTACTTTTTTCCCAATCTCTGGCTTGCCGATATAAAGACGCTGACAT
GTCACAAAATCATCAGCACTTAGACAAACAATGACGTGTATCTGAAAACT
TGATGGAAACCTGGAAACGAGCAATTGCTGGTCTTGTTGAAAGTGCTCCA
AACGATACCATCAACAATTGTCTACGGATTTATAACCAAGAAACACCAAC
TAGCGATCAATATCAAAGCACTCAAATCACGTCGCAAACAAATGGTCATT
GATACCCTTAACTTTCTAATGCCACCCCCTTCATTACTCTCCGACAAGGT
GACTAAAGATGAtgtaagctctagtttagacggccgactttctgccctgt
ctattctaattgttagagtaggcagaaagagggcacaaagttggttgtta
aaatctttgcttggaaaggTTTGAAAGAAGACATTGCATTGACGTCAAAA
GAGGGCTATGCATCACTTTAGACAGCCCACTTTGTGCcctctttaattca
caattagaataggcagggcaaaaagtgggccgtctaaactagagctaatt
CACCTTTTATGCTTGAAAATCAAGAATTTCTTCCCAGACGTAAGCCAGAT
TTGTAAAGCGTCGTATTCCTTCAAACTCAATGACAAACCACTCATAAGTT
GAGGGGCATGTGGTCAAGAAGTGCATCGACTGTGCTATCTTGATCTTTTA
AGGAGTATGAGCCTTGTGAACGAAAAGAGGAATAACGCCACCTTATCTAC
AAAATCCCTGGCCTTTACTATTTTTGTCCGTCTTGCCAAGATGAATAACC
ATCAATTTCCCTCATGTTCCAAATGATTAAACGGAAACCCTACCGTATGA
AAAATCTTCAACTACAGTATCTCCAACTCAAATAACAGAGGCTGCTGAAT
CTACAGAAAATCAGATCCTAAACACTCCAAAGCGTACCCTCCCACCAATT
CCATCCACTCCAAAGGAGTGCCTTTTGGTCGACGAACAAAAAACGAAACA
CTTGAGGGAATAGTAAAAACTAactttttgaagataaaacGCCAACGAGA
ATGATGCAACATTGTCTTCTGAAAATACAACAGACAAAGAAAATGACTCT
GATGAAATCCCAGTTTGCAATTTCTACAAAAAGGGGAAACATGATATCAA
GGGCAAGAATTGTCGATTCAAACATCCAAAAATGTGCGCCATTACTGAAA
CATGGTAACAAATCTCCAATAGGATTGAGTGCTGGTACCAATTGTACCAT
GTTTTACCCTCGTATGTGTTCGTCCTCAATCACAAAAGGGAAATGCTTCA
ACCTTGATTGTACCTTCACCCATGTCAAAGGGACAAATCTCAACCAATCC
AATAACCAAGTCAACAATACCCAACAAACACacgattttctaaaaattct
gGACAATTCTCGGACGGAAATGATGGCAATGATAACCAACAACCTGGCTG
TAAGAACACTTCAGCAACCAATTCAAACAACACGGCAAATACATCTACAC
AATCTCCTACAACATTTCCAAGACATAAGACATTGTTCAAATGACATACT
TCTCTTATGTGAGTATGCATGGTTTATGCCCACAAACCACCCCTTCGTCA
Coding sequence (CDS) from alignment at sc0000411:69242..70941+ >TCONS_00022294 ID=TCONS_00022294|Name=TCONS_00022294|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000411:69242..70941+ (Clytia hemisphaerica)
ATGATGCAACATTGTCTTCTGAAAATACAACAGACAAAGAAAATGACTCT
GATGAAATCCCAGTTTGCAATTTCTACAAAAAGGGGAAACATGATATCAA
GGGCAAGAATTGTCGATTCAAACATCCAAAAATGTGCGCCATTACTGAAA
CATGGTAACAAATCTCCAATAGGATTGAGTGCTGGTACCAATTGTACCAT
GTTTTACCCTCGTATGTGTTCGTCCTCAATCACAAAAGGGAAATGCTTCA
ACCTTGATTGTACCTTCACCCATGTCAAAGGGACAAATCTCAACCAATCC
AATAACCAAGTCAACAATACCCAACAAACACacgattttctaaaaattct
gGACAATTCTCGGACGGAAATGATGGCAATGATAACCAACAACCTGGCTG
TAAGAACACTTCAGCAACCAATTCAAACAACACGGCAAATACATCTACAC
AATCTCCTACAACATTTCCAAGACATAAGACATTGTTCAAATGACATACT
TCTCTTATGTGAGTATGCATGGTTTATGCCCACAAACCACCCCTTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022294-exon-sc0000411-1491911889:69242..69654 | TCONS_00022294-exon-sc0000411-1491911889:69242..69654 | Clytia hemisphaerica | exon |
| TCONS_00022294-exon-sc0000411-1510915933:69242..69654 | TCONS_00022294-exon-sc0000411-1510915933:69242..69654 | Clytia hemisphaerica | exon |
| TCONS_00022294-exon-sc0000411-1575043694:69242..69654 | TCONS_00022294-exon-sc0000411-1575043694:69242..69654 | Clytia hemisphaerica | exon |
| TCONS_00022294-exon-sc0000411-1491911889:69886..70941 | TCONS_00022294-exon-sc0000411-1491911889:69886..70941 | Clytia hemisphaerica | exon |
| TCONS_00022294-exon-sc0000411-1510915933:69886..70941 | TCONS_00022294-exon-sc0000411-1510915933:69886..70941 | Clytia hemisphaerica | exon |
| TCONS_00022294-exon-sc0000411-1575043694:69886..70941 | TCONS_00022294-exon-sc0000411-1575043694:69886..70941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:69242..70941 + |
Blast
The following BLAST results are available for this feature:
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