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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022275 ID=TCONS_00022275|Name=TCONS_00022275|organism=Clytia hemisphaerica|type=transcript|length=1048bp
TAGTGTTAAAACTAAATCATTAATGGTCATTCAAATGCGAGACACATGGA
TTGGAACATCTGGTGAAAATTGGTAACAGTTCCCacattgattttaattt
ttggtacaCATTCAATCCGTCACCTGGAAAGTTCATTTATCTATGCAATT
GCAAACATCCTGATCAAAAATTACGTAGATTGCCTTTCGTGGAGGATGTA
GTGATGGGTATCATATACGATGAGGTGACAGACCAAACAAAGTTTTACAT
GTGTGACATCACTCGGTTTGATTGGTTCTACACTAAACCTACAGAcTCAG
TTGAGTTTTCAAAAGAGGCATCTTCATTACAACAAATCTGTAAAACTCTT
TCGCAATTCCTGCAGCTGAATAAGAAAACAAATAAATTGACGCCTGAGAA
GTTGTATCGTATGACTAAGCTGTCTGTGGAGTCGCATTCAGATACAATTT
TTCCTCTCTTAAGTCACGATTTGGAGAGGACTAAGTACAAATTCCAACAC
GAAGTAGAAAAGCTGAATTTATCCCAATCTGAACTCGTCAAGTTGGTgca
taaattaaaattttttgctgatttaTGTAACTTTCAAAGAAGAGACTTTG
TACAATCACTCATCGATTTTGTCCAACCTATTGGCAACACTATCAACGTT
TTTGATTACGGTGAACTCTTAGCTTATGTGCCTGTAGTGAAAAAGGTGCT
TGGAAGAGCAAGTTGTATCAAGAATAGAGAAAATAAATCTGAGCTAGTTG
TTATTAAACTTGAACATAACGTCATTTTGGAATCAACGGTGAATTTTACT
GGATCAAGTCGGTATTCATTGGACTTGAATGGGAAAAAGCTGTTACATTT
CTTAGATGGAGCTAAAGATGTTATTCTCTCAGAGGAAAGTGTTTTTGAAA
TCAGTGCTGCTTTTGAATTATTTGTTGATAAGAACATCGATCAGACACTA
TTAGCAACAGTACCAGAGATCAGTTTGGATTTTGTCTTTCAATTATTGCG
ATGTCTTCATTCTAGTAAAGTTTTTGTCCTAGATGAACTCAAGTTACA Run BLAST on NCBI protein sequence of TCONS_00022275-protein >TCONS_00022275-protein ID=TCONS_00022275-protein|Name=TCONS_00022275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MGIIYDEVTDQTKFYMCDITRFDWFYTKPTDSVEFSKEASSLQQICKTLS
QFLQLNKKTNKLTPEKLYRMTKLSVESHSDTIFPLLSHDLERTKYKFQHE
VEKLNLSQSELVKLVHKLKFFADLCNFQRRDFVQSLIDFVQPIGNTINVF
DYGELLAYVPVVKKVLGRASCIKNRENKSELVVIKLEHNVILESTVNFTG
SSRYSLDLNGKKLLHFLDGAKDVILSEESVFEISAAFELFVDKNIDQTLL
ATVPEISLDFVFQLLRCLHSSKVFVLDELKL Run BLAST on NCBI transcript from alignment at sc0000410:144313..146249- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022275 ID=TCONS_00022275|Name=TCONS_00022275|organism=Clytia hemisphaerica|type=transcript|length=1937bp|location=Sequence derived from alignment at sc0000410:144313..146249- (Clytia hemisphaerica)
TAGTGTTAAAACTAAATCATTAATGGTAGGTATTTGATTATTTTTGATTT
AAAATTCAAAGGGAAGCATTCAAGTAATGGAAATATTATCACTGGATGAG
TATAGTATATTGGAAATATTTAAGCATCTTGATCTAGACAGTAGAAGAAA
TCTCTCCTTGACATGTAAAAGGTTTCACCAAGCGAACAAAACTATTTTGA
ATTGGGATGTACTTGAAGAAGATTTGAAATCCCAGTTGGTAGATTGTGTA
TGTAATGGACATGATAGGGATGATATCCCTTACAATTTCAAATACCAATA
TAATGTGTCCATGGTTTTGAAGTATTTTCTACAGACCATTGATGTTTGTA
ACAGGATATCAAAGGAATCTTTACTGAAGGAAGATGATATTGTTCTGAAA
GACCTAAAATTAAGTTCTGTCGAATTGATTCTAAAAAGGTCATTCAAATG
CGAGACACATGGATTGGAACATCTGGTGAAAATTGGTAACAGTTCCCACA
TTGATTTTAATTTTTGGTACACATTCAATCCGTCACCTGGAAAGTTCATT
TATCTATGCAATTGCAAACATCCTGATCAAAAATTACGTAGATTGCCTTT
CGTGGAGGATGTAGTGATGGGTATCATATACGATGAGGTGACAGACCAAA
CAAAGTTTTACATGTGTGACATCACTCGGTTTGATTGGTTCTACACTAAA
CCTACAGAGTAAGTGTTGACCATGGTGTTATAATTAGATTAGTTATACTG
TCTATATACACCTTTAGGGAACTAACTTTCGCTGTAACTAATTTTCAAGG
AACTAATTTTCACGAACTAATTTTCGCATTTTTGGGTGTCTACCGCAAAA
ATTAGTTCTGCGAAATACAAATTTTACTAGAAATCCTTAAAAAAAGGTAA
ATGAAAGAACCGTGGTATTTGTACCCTCGCCTGGGAAAAATAACTTCTGC
AAAAATTAGTTACCACAAAAATTAGTTCCCTTAATAAGGTACTTATCTAA
TTTTAAAATTTTGTCGGATCTAAAACGTCATTATTCACAAAATCTTCATT
TTAAAGAAATCTTTTTTAAATACTTACTGCAATGTTTGGAAATATATCTA
ATTAAACACCAGAAAAAAGTATGAGATTTTTGGTGTTATTCTATCCTTAT
TCGAACTTTATCTCCACTTTTTCTTTTTTTATAGCTCAGTTGAGTTTTCA
AAAGAGGCATCTTCATTACAACAAATCTGTAAAACTCTTTCGCAATTCCT
GCAGCTGAATAAGAAAACAAATAAATTGACGCCTGAGAAGTTGTATCGTA
TGACTAAGCTGTCTGTGGAGTCGCATTCAGATACAATTTTTCCTCTCTTA
AGTCACGATTTGGAGAGGACTAAGTACAAATTCCAACACGAAGTAGAAAA
GCTGAATTTATCCCAATCTGAACTCGTCAAGTTGGTGCATAAATTAAAAT
TTTTTGCTGATTTATGTAACTTTCAAAGAAGAGACTTTGTACAATCACTC
ATCGATTTTGTCCAACCTATTGGCAACACTATCAACGTTTTTGATTACGG
TGAACTCTTAGCTTATGTGCCTGTAGTGAAAAAGGTGCTTGGAAGAGCAA
GTTGTATCAAGAATAGAGAAAATAAATCTGAGCTAGTTGTTATTAAACTT
GAACATAACGTCATTTTGGAATCAACGGTGAATTTTACTGGATCAAGTCG
GTATTCATTGGACTTGAATGGGAAAAAGCTGTTACATTTCTTAGATGGAG
CTAAAGATGTTATTCTCTCAGAGGAAAGTGTTTTTGAAATCAGTGCTGCT
TTTGAATTATTTGTTGATAAGAACATCGATCAGACACTATTAGCAACAGT
ACCAGAGATCAGTTTGGATTTTGTCTTTCAATTATTGCGATGTCTTCATT
CTAGTAAAGTTTTTGTCCTAGATGAACTCAAGTTACA Coding sequence (CDS) from alignment at sc0000410:144313..146249- >TCONS_00022275 ID=TCONS_00022275|Name=TCONS_00022275|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at sc0000410:144313..146249- (Clytia hemisphaerica)
CTCAGTTGAGTTTTCAAAAGAGGCATCTTCATTACAACAAATCTGTAAAA
CTCTTTCGCAATTCCTGCAGCTGAATAAGAAAACAAATAAATTGACGCCT
GAGAAGTTGTATCGTATGACTAAGCTGTCTGTGGAGTCGCATTCAGATAC
AATTTTTCCTCTCTTAAGTCACGATTTGGAGAGGACTAAGTACAAATTCC
AACACGAAGTAGAAAAGCTGAATTTATCCCAATCTGAACTCGTCAAGTTG
GTGCATAAATTAAAATTTTTTGCTGATTTATGTAACTTTCAAAGAAGAGA
CTTTGTACAATCACTCATCGATTTTGTCCAACCTATTGGCAACACTATCA
ACGTTTTTGATTACGGTGAACTCTTAGCTTATGTGCCTGTAGTGAAAAAG
GTGCTTGGAAGAGCAAGTTGTATCAAGAATAGAGAAAATAAATCTGAGCT
AGTTGTTATTAAACTTGAACATAACGTCATTTTGGAATCAACGGTGAATT
TTACTGGATCAAGTCGGTATTCATTGGACTTGAATGGGAAAAAGCTGTTA
CATTTCTTAGATGGAGCTAAAGATGTTATTCTCTCAGAGGAAAGTGTTTT
TGAAATCAGTGCTGCTTTTGAATTATTTGTTGATAAGAACATCGATCAGA
CACTATTAGCAACAGTACCAGAGATCAGTTTGGATTTTGTCTTTCAATTA
TTGCGATGTCTTCATTCTAGTAAAGTTTTTGTCCTAGATGAACTCAAGTT
AATGGGTATCATATACGATGAGGTGACAGACCAAACAAAGTTTTACATGT
GTGACATCACTCGGTTTGATTGGTTCTACACTAAACCTACAGACTCAGTT
GAGTTTTCAAAAGAGGCATCTTCATTACAACAAATCTGTAAAACTCTTTC
GCAATTCCTGCAGCTGAATAAGAAAACAAATAAATTGACGCCTGAGAAGT
TGTATCGTATGACTAAGCTGTCTGTGGAGTCGCATTCAGATACAATTTTT
CCTCTCTTAAGTCACGATTTGGAGAGGACTAAGTACAAATTCCAACACGA
AGTAGAAAAGCTGAATTTATCCCAATCTGAACTCGTCAAGTTGGTGCATA
AATTAAAATTTTTTGCTGATTTATGTAACTTTCAAAGAAGAGACTTTGTA
CAATCACTCATCGATTTTGTCCAACCTATTGGCAACACTATCAACGTTTT
TGATTACGGTGAACTCTTAGCTTATGTGCCTGTAGTGAAAAAGGTGCTTG
GAAGAGCAAGTTGTATCAAGAATAGAGAAAATAAATCTGAGCTAGTTGTT
ATTAAACTTGAACATAACGTCATTTTGGAATCAACGGTGAATTTTACTGG
ATCAAGTCGGTATTCATTGGACTTGAATGGGAAAAAGCTGTTACATTTCT
TAGATGGAGCTAAAGATGTTATTCTCTCAGAGGAAAGTGTTTTTGAAATC
AGTGCTGCTTTTGAATTATTTGTTGATAAGAACATCGATCAGACACTATT
AGCAACAGTACCAGAGATCAGTTTGGATTTTGTCTTTCAATTATTGCGAT
GTCTTCATTCTAGTAAAGTTTTTGTCCTAGATGAACTCAAGTTAATGGGT
ATCATATACGATGAGGTGACAGACCAAACAAAGTTTTACATGTGTGACAT
CACTCGGTTTGATTGGTTCTACACTAAACCTACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022275-exon-sc0000410-1575043694:146225..146249 | TCONS_00022275-exon-sc0000410-1575043694:146225..146249 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1575043694:145542..145811 | TCONS_00022275-exon-sc0000410-1575043694:145542..145811 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1575043694:144313..145065 | TCONS_00022275-exon-sc0000410-1575043694:144313..145065 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1510915933:146225..146249 | TCONS_00022275-exon-sc0000410-1510915933:146225..146249 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1510915933:145542..145811 | TCONS_00022275-exon-sc0000410-1510915933:145542..145811 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1510915933:144313..145065 | TCONS_00022275-exon-sc0000410-1510915933:144313..145065 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1491911889:146225..146249 | TCONS_00022275-exon-sc0000410-1491911889:146225..146249 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1491911889:145542..145811 | TCONS_00022275-exon-sc0000410-1491911889:145542..145811 | Clytia hemisphaerica | exon |
| TCONS_00022275-exon-sc0000410-1491911889:144313..145065 | TCONS_00022275-exon-sc0000410-1491911889:144313..145065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:144313..146249 - |
Blast
The following BLAST results are available for this feature:
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