TCONS_00022174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022174
Unique NameTCONS_00022174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022174 ID=TCONS_00022174|Name=TCONS_00022174|organism=Clytia hemisphaerica|type=transcript|length=244bp
TGGATTTTTCAGTGGGCCAACTTTAGGTTTAGTTTTTGTGAATCTTTTTG
CATAGGAGTAGAAGTATTTAGGATTGCTTTTGATTTTGAGTGAGGCATCC
AGCTCTGCTTTATCGCGTTCATTTTTGTAGGATTGCTGTAGCGTCAGTTC
AATGTCAATTAGTTTctgatttgttttattggttttgaaattctttttgg
agAGTCTTTTACGTTTTCTCATAAGAATACGACGATCTCTTGGA
Run BLAST on NCBI

transcript from alignment at sc0000406:3891..4134

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022174 ID=TCONS_00022174|Name=TCONS_00022174|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000406:3891..4134 (Clytia hemisphaerica)
TCCAAGAGATCGTCGTATTCTTATGAGAAAACGTAAAAGACTctccaaaa agaatttcaaaaccaataaaacaaatcagAAACTAATTGACATTGAACTG ACGCTACAGCAATCCTACAAAAATGAACGCGATAAAGCAGAGCTGGATGC CTCACTCAAAATCAAAAGCAATCCTAAATACTTCTACTCCTATGCAAAAA GATTCACAAAAACTAAACCTAAAGTTGGCCCACTGAAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012435XLOC_012435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022174-exon-sc0000406-1491911889:3891..4134TCONS_00022174-exon-sc0000406-1491911889:3891..4134Clytia hemisphaericaexon
TCONS_00022174-exon-sc0000406-1510915933:3891..4134TCONS_00022174-exon-sc0000406-1510915933:3891..4134Clytia hemisphaericaexon
TCONS_00022174-exon-sc0000406-1575043694:3891..4134TCONS_00022174-exon-sc0000406-1575043694:3891..4134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:3891..4134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.69976 8.51315 3.52595 9.02744 3.91528 0.216661 0 21.3747 6.68162 5.22884 13.7564 8.54381 7.47125 3.37635 2.83111 0.454309 0 6.31729 0 5.21 7.80031 2.64233 1.66775 0 2.64224 6.19474 1.23162 0 6.61735 9.19601
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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