TCONS_00022089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022089
Unique NameTCONS_00022089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022089 ID=TCONS_00022089|Name=TCONS_00022089|organism=Clytia hemisphaerica|type=transcript|length=784bp
cttagaaattACCCGAAAAAATATTTAGATGCGATCAGAAAGATGTCATT
TTATAGGtcgtaaaattatgaaattgcaAAGTTATTGTTAAGGGTCTGAG
GATTCAGTAGTCGCTGGTTTATTATAACTTGCTTGTTGGTTTCGCTTGAA
AACAtcatgaaagaaaaagaagaatgcGAGATTATCGAACTAATTGATGC
AAAGGAAAGCATGAAAATCATTCGAATAAATGAGTCTTTCATAACTGAAA
AACTACATTGGACAAATATTTTATGGATCGTTATCCCAATTTTACTGATT
ATTCTTGTTGGATATTCCCTTTATCGGGTGAACGAGTTGAAAAACATGGA
ACGAGAGTTGGCGACTTGTCTCTTTGCGAATCGGTTTCAAGAAAATTTCC
AATACGACGGAGAAGATGTTTCCTCCGATTATTTGGGAGGTATCAACGAT
CAAAACAAAATACGAAACTTTGTGATCCGTTGCTATAAGGTTTGCCTGTT
TTTGAATAACTGAAAATAATCTGCAGcggagaaaaaatcttttggtaGAG
TAATTAGATGATAGAGCGGCCCCGTCGTCCTTGCTGAACgtgtggaatat
tatcaaatagaaatgaattctagaaaaataagaaaacgaTGAGACGAGAA
AATCGACTTCGTCAAGAAGCTGCTATGCTGCAACAAGTACCATTTTCACA
CGAAAGCGATTCTTTTGAAATTAGTACAGTATTTGATATATATTTGATAT
TATAATAACATATCGTCAATACTTTAAATGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00022089-protein

>TCONS_00022089-protein ID=TCONS_00022089-protein|Name=TCONS_00022089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MKEKEECEIIELIDAKESMKIIRINESFITEKLHWTNILWIVIPILLIIL
VGYSLYRVNELKNMERELATCLFANRFQENFQYDGEDVSSDYLGGINDQN
KIRNFVIRCYKVCLFLNN
Run BLAST on NCBI

transcript from alignment at sc0000403:283780..284563

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022089 ID=TCONS_00022089|Name=TCONS_00022089|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000403:283780..284563 (Clytia hemisphaerica)
TTCACATTTAAAGTATTGACGATATGTTATTATAATATCAAATATATATC
AAATACTGTACTAATTTCAAAAGAATCGCTTTCGTGTGAAAATGGTACTT
GTTGCAGCATAGCAGCTTCTTGACGAAGTCGATTTTCTCGTCTCAtcgtt
ttcttatttttctagaattcatttctatttgataatattccacacGTTCA
GCAAGGACGACGGGGCCGCTCTATCATCTAATTACTCtaccaaaagattt
tttctccgCTGCAGATTATTTTCAGTTATTCAAAAACAGGCAAACCTTAT
AGCAACGGATCACAAAGTTTCGTATTTTGTTTTGATCGTTGATACCTCCC
AAATAATCGGAGGAAACATCTTCTCCGTCGTATTGGAAATTTTCTTGAAA
CCGATTCGCAAAGAGACAAGTCGCCAACTCTCGTTCCATGTTTTTCAACT
CGTTCACCCGATAAAGGGAATATCCAACAAGAATAATCAGTAAAATTGGG
ATAACGATCCATAAAATATTTGTCCAATGTAGTTTTTCAGTTATGAAAGA
CTCATTTATTCGAATGATTTTCATGCTTTCCTTTGCATCAATTAGTTCGA
TAATCTCgcattcttctttttctttcatgaTGTTTTCAAGCGAAACCAAC
AAGCAAGTTATAATAAACCAGCGACTACTGAATCCTCAGACCCTTAACAA
TAACTTtgcaatttcataattttacgaCCTATAAAATGACATCTTTCTGA
TCGCATCTAAATATTTTTTCGGGTaatttctaag

Coding sequence (CDS) from alignment at sc0000403:283780..284563

>TCONS_00022089 ID=TCONS_00022089|Name=TCONS_00022089|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000403:283780..284563 (Clytia hemisphaerica)
TCAGTTATTCAAAAACAGGCAAACCTTATAGCAACGGATCACAAAGTTTC
GTATTTTGTTTTGATCGTTGATACCTCCCAAATAATCGGAGGAAACATCT
TCTCCGTCGTATTGGAAATTTTCTTGAAACCGATTCGCAAAGAGACAAGT
CGCCAACTCTCGTTCCATGTTTTTCAACTCGTTCACCCGATAAAGGGAAT
ATCCAACAAGAATAATCAGTAAAATTGGGATAACGATCCATAAAATATTT
GTCCAATGTAGTTTTTCAGTTATGAAAGACTCATTTATTCGAATGATTTT
CATGCTTTCCTTTGCATCAATTAGTTCGATAATCTCgcattcttcttttt
ctttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012388XLOC_012388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022089-proteinTCONS_00022089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022089-exon-sc0000403-1491911889:283780..284563TCONS_00022089-exon-sc0000403-1491911889:283780..284563Clytia hemisphaericaexon
TCONS_00022089-exon-sc0000403-1510915933:283780..284563TCONS_00022089-exon-sc0000403-1510915933:283780..284563Clytia hemisphaericaexon
TCONS_00022089-exon-sc0000403-1575043694:283780..284563TCONS_00022089-exon-sc0000403-1575043694:283780..284563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:283780..284563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0601676	0	0	0.0832065	0.0657509	5.39414	4.01024	4.88741	3.41334	2.00035	4.02703	2.13382	2.21599	3.81887	3.53426	0.0926365	0.522222	1.50855	0.686341	0.0596555	0.0872935	0	0	0	0.0591221	0.0846035	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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