TCONS_00022038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022038
Unique NameTCONS_00022038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022038 ID=TCONS_00022038|Name=TCONS_00022038|organism=Clytia hemisphaerica|type=transcript|length=3584bp
ATTCTCAGGACGAAATACCAATGAATATTGATTCAAATTTGGACTCGAAC
GTGACTGATCATTTTCTTTCGCAGAACCAAAATCAGGCGACCTCTCAGAC
AGAACCCAGAATAAACGATAAACAACTAACCGACaaacaacaaaaagaag
aaaataacgaACTGAAAAATATTATAGACGTTTCGCCTGAATTGGCTGTA
TGTACGGGTGGtgttaagattattttaatCGGCTCCTGGAATGCCAAAGA
CGCGAGGTATCAATGCCAGTTCGGTAGCTGTTGTGTAGATGCAGAACTTA
TACAGAACGGCGTGCTCCGTTGCTTTAGTCCAAAGCACAAGCCGGGTGCC
GTCCGTCTGTCGGTGCTTTGTAATAGTAAGACGTTATCTGAAGAAGTTGA
TTTCACNAATCGAACCCGATAACAAGTGCAACACCTACTTGGATGCCAAA
CCTTAATCATCAATCGAATACGTTTCAATCGATTTCAATCGAATCGATGG
AATTTCAAAACGATCATTCAATACTTTTTTCGACACAACAAAATGATGAT
TTATCGAATACAGTCGATTTAAACCCGTTTAATGGAATCGATATCGATCT
ATCGTGTTTCGATACTGAACCTTTTGATGCTCTGAACCAACTTTATCCTA
GCGGGAATGATCATCAAAATTTCCACGATCAAAATTTTGATACGAACACG
GATTTATGTAATGAAGAAACTGCCCAGAACTTCAATAGCACTGTAATATC
GTCCATCAATATTGATCCCATCACATCAACAGAAAATTTAAATACGAATA
CAACTTCTCAGGACGAAATACCAATGAATATTGATTCAAATATAGACTCG
AACGTGACTGATCATTTTCTTTCGCAGCAACATAATCAGGCGACCTCTCA
GACAGAACCCAGAATAAACGATAAACAACTAACCGACaaacaacaaaaag
aagaaaataacgaACTGAAAAATATTATAGACGTTTCGCCTGAATTGGCT
GTATGTACGGGTGGtgttaagattattttaatCGNACCTAATGGACACAT
CCTATTACAACCTGCCTATGGATCCAAACCTATACCTAACAACCATGTGG
GTATTACACCCTCTCTACCGCCATTGACAACCAACCACGCCCAACCAAAC
GCtttatttcaaacatcaaatATTACAAAACTTACCAACAAGGAAATACA
ATCTTCCAAAGATTTAGACTCTAAATTTTTACATCAAATCATTGGAAATG
GATTCAAGNGCACAAGCCGGGTGCCGTCCGTCTGTCGGTGCTTTGTAATA
GTAAGACGTTATCTGAAGAAGTTGATTTCACATTTGTAGAAAGTAGCGAG
AAGAATTGGACGGAGAAAATCGACCATGATGATTGGCTTTCCATAAGCGA
AACAACTCTGGCCGATCTTCTTGTCAAGCGGATCTCTTTCATCTCTGATA
TGGTCACAGGTGATGAGACAAACGCGGCCCGCGCGTTCAATCGGGACGCC
CTTGACCCAACGCTTGTTGAGGATAAGCTTATAGACGTTTGTAAGAGTTT
GATGTCTCAAACAGTTGATATTGATTTCGATTATAAAATCGAACGAACGA
TGACTGTATTACACTTAGCATCGGCTTTAGGATATTTGAAACTGATTCAA
CTCTTAATGAACTGGGTGGAATCGAACCCGAATAAAATTATACAAGTTGA
AGCATGCCCAACATGCGTTGATCAATTTTCTTTGGTCCCAATCATGTGGG
CATCAGCTAAAGGTCATTTCACAACCACCTGCGTACTGCACCAATGGGCT
GAATCGACGATCGAGTTGAAGGATGCATGTGGGTGCACTTCCTTATCCTT
AGCCATGGAAAGCGGTCACGAATCACTGGTCGAATATCTTGGAAGGTTGA
TCAAGAAATCCACCATTTCTAGAGAGAATTCGATGAATCAAGAACAATTT
TCTTCATCTCTTTCGACGTCTTTTGGAAACCCAGGGTCGGTTTCATCAAC
CTCTACCAGTATCTCCAACGTTGACGACTCTTCACCACGTACATTGGGTA
AGACACTAGCCTTCATTCAATCCATGTTAAACGAACAAATGGACGATTTG
AACCATGCAGAAGATGAGGAAGATGATGACGCAAGCTTGTTCGCTGCTCA
CAACGAGTTCGTCAACACAAGACAACGCAGTGTAACGGACGAAAGTGTGG
CATCCACCAGTCAACATTCGCCCGCATCGCCCGCCCAAAACGCCCTGCAA
TCACCTTTCAATCGCCAAATGAGGGAAACAGCCGAATTCTGTGAATTCTT
TtacaaagcaaagaaaattgaGAAAGATTTTGCAGAGTTAACTTTGACTG
accAGGAGCAAGAAGAGTTATATCGAGCTGCAAATGTCATTCAAACAGCT
TACAAAGCATACAAGGAAAGACGAAAGCAACGCGACCAAGAGTTTTCATC
GGCCACGCTCATTCAAAGCTATTATCGACGGTATAAGCAGTATGCAGCCT
TCAAGAAGATGCAAAAAGGTGCCGTGCTCATTCAAAACCAATATCGGGCT
CATCGagaaaaatctaagaaaaaataCGAAGCTGCCTCGCTGATCCAAAC
CAACTGGAGAAGGTACCGACAACGGAAATGTACGAAAAGCGAGGCAAACA
AATTGGAACAACAAGCGAGTCGTAGGGTGAATCGTTATCTGCAACAGACT
ACAAAAAGGTTTAGCCGTGAATTTCCAGAAGAATTCAATGCTCCGTCGAC
CTCGTCGCAAATCATCGATATTGACTTTGGACCAAATAGCTGACAACTAT
CCAAGAGCGTACTTGCaatttaacttatttttaaactGAATTACTAAAAC
TGAGAGAAAACCGGGTGTTTATATACTGTTTTTCTTGTAGAAATTTTTAA
CTCGAAATATTTATTGAAAGCAATATTGTTTAAATTTTCGTCTATTTTTC
CGTTCAATAGCTTTgctatttatttcattttttttttcttaaagctTTTT
ATTTATCGCTCATTCACTTTTCACTAAGTCATACCAGTTCTGAACAGATA
CCATGGAGCCGTATAAGCCATTGTGTTTAAAGCCCGGAGGGATAGGAAGA
AATCTTCAAACTTTCCAAGCAAGAAAAGAGAAATTTGCGCCGCACTTAGA
TTGACGGATTAAACCAGCCCTCTTTGTTTTCACGCGGCGTAATTTTCAAA
ACGCCAAGTTTTGAAAATAACGCCGCGTGGACCTTTTTCAATCCAGCTTT
TTTGTTAAAACCACGCGTTTCACGGGTTCAGATTGGAAATAAGAAGCTTC
ATTCATGAGTTTCATCTCTAGTCCCTTCGGGTCGTAAAAGTCAATTGTAT
AAGCTTTCCTACGTATCCCGGCTACAAAATAAATCGAGACAGTCTAAATA
GTATTGGAAATCTTGAGGTTCTTTTTCTATTCGCTTGCACATTATCGATT
TAGCCAAAAAAAGACTCGGAAATATGAGAAGTTGCTTTACACGAATTGGA
CACTCTTTCTACAATGAGTAACAacaaattttacgaaaattgTAAATATC
AATATCGACCATTATTTAAAGAAACATTCTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000403:29207..37409-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022038 ID=TCONS_00022038|Name=TCONS_00022038|organism=Clytia hemisphaerica|type=transcript|length=8203bp|location=Sequence derived from alignment at sc0000403:29207..37409- (Clytia hemisphaerica)
ATTCTCAGGACGAAATACCAATGAATATTGATTCAAATTTGGACTCGAAC
GTGACTGATCATTTTCTTTCGCAGAACCAAAATCAGGCGACCTCTCAGAC
AGAACCCAGAATAAACGATAAACAACTAACCGACAAACAACAAAAAGAAG
AAAATAACGAACTGAAAAATATTATAGACGTTTCGCCTGAATTGGCTGTA
TGTACGGGTGGTGTTAAGATTATTTTAATCGGCTCCTGGAATGCCAAAGA
CGCGAGGTATCAATGCCAGTTCGGTAGCTGTTGTGTAGATGCAGAACTTA
TACAGAACGGCGTGCTCCGTTGCTTTAGTCCAAAGCACAAGCCGGGTGCC
GTCCGTCTGTCGGTGCTTTGTAATAGTAAGACGTTATCTGAAGAAGTTGA
TTTCACNAATCGAACCCGATAACAAGTGCAACACCTACTTGGATGCCAAA
CCTTAATCATCAATCGAATACGTTTCAATCGATTTCAATCGAATCGATGG
AATTTCAAAACGATCATTCAATACTTTTTTCGACACAACAAAATGATGAT
TTATCGAATACAGTCGATTTAAACCCGTTTAATGGAATCGATATCGATCT
ATCGTGTTTCGATACTGAACCTTTTGATGCTCTGAACCAACTTTATCCTA
GCGGGAATGATCATCAAAATTTCCACGATCAAAATTTTGATACGAACACG
GATTTATGTAATGAAGAAACTGCCCAGAACTTCAATAGCACTGTAATATC
GTCCATCAATATTGATCCCATCACATCAACAGAAAATTTAAATACGAATA
CAACTTCTCAGGACGAAATACCAATGAATATTGATTCAAATATAGACTCG
AACGTGACTGATCATTTTCTTTCGCAGCAACATAATCAGGCGACCTCTCA
GACAGAACCCAGAATAAACGATAAACAACTAACCGACAAACAACAAAAAG
AAGAAAATAACGAACTGAAAAATATTATAGACGTTTCGCCTGAATTGGCT
GTATGTACGGGTGGTGTTAAGATTATTTTAATCGNACCTAATGGACACAT
CCTATTACAACCTGCCTATGGATCCAAACCTATACCTAACAACCATGTGG
GTATTACACCCTCTCTACCGCCATTGACAACCAACCACGCCCAACCAAAC
GCTTTATTTCAAACATCAAATATTACAAAACTTACCAACAAGGAAATACA
ATCTTCCAAAGATTTAGACTCTAAATTTTTACATCAAATCATTGGAAATG
GATTCAAGNGCACAAGCCGGGTGCCGTCCGTCTGTCGGTGCTTTGTAATA
GTAAGACGTTATCTGAAGAAGTTGATTTCACATTTGTAGAAAGTAGCGAG
AAGAATTGGACGGAGAAAATCGACCATGATGATTGGCTTTCCATAAGCGA
AACAACTCTGGCCGATCTTCTTGTCAAGCGGATCTCTTTCATCTCTGATA
TGGTCACAGGTGATGAGACAAACGCGGCCCGCGCGTTCAATCGGGACGCC
CTTGACCCAACGCTTGTTGAGGATAAGCTTATAGACGTTTGTAAGAGTTT
GATGTCTCAAACAGTTGATATTGATTTCGATTATAAAATCGAACGAACGA
TGACTGTATTACACTTAGCATCGGCTTTAGGATATTTGAAACTGATTCAA
CTCTTAATGAACTGGGTGGAATCGAACCCGAATAAAATTATACAAGTTGA
AGCATGCCCAACATGCGTTGATCAATTTTCTTTGGTCCCAATCATGTGGG
CATCAGCTAAAGGTCATTTCACAACCACCTGCGTACTGCACCAATGGGCT
GAATCGACGATCGAGTTGAAGGATGCATGTGGGTGCACTTCCTTATCCTT
AGCCATGGAAAGCGGTCACGAATCACTGGTCGAATATCTTGGAAGGTTGA
TCAAGAAATCCACCATTTCTAGGTATACATTCTCGTCTTTCAAAAAGGTT
TTTTCTAATCGGTTTTTGATAAAGTTCTTCTTTCAACGTTTAAAAAATCG
TCTACCCATAGATAGAGTTGTATTACAAAAGTGAACCATGTCAATTTCGA
AGAATGATTGTAGATCAAATTTTAGAACTTCTTTTAAAATAAATTTACAT
TACGTATATTAGACTCTTAGATAAGTGAATACACGTATTTCCTATTAGCA
GATTCATATAAAAAAGTCACGAAGAAACGTCGAGTAAAGCTCTGATTGGC
TGAGACATGCAAAGATTACCTCATACTCTGGACATTTAAAAAAAATATAT
GCCTATGTGTACACTATTCCACCAATCAGAGCTTTACTCGACGTTTTTTC
GTGACAATTTCCCGACATTCGAAATTTTTCATTTCATCTTTGCAGAGAGA
ATTCGATGAATCAAGAACAATTTTCTTCATCTCTTTCGACGTCTTTTGGA
AACCCAGGGTCGGTTTCATCAACCTCTACCAGTATCTCCAACGTTGACGG
TGAGTGGTCTTCTCTTCATGCATTTTAATTACCCGTGTATTGTTAATACT
CTTTCAGAAACTTTTGCCAGAACGGGACGAAAGTAGTACAGGATTTTGAT
AGGTTTTTATAGCAACGTCTATGACCTTAATTACTTGATTTACTTCTCTG
AAATTCCGTTTATTTGTCTGAATTTTTTTTACAAACGATTTGAATAAGCT
TCTTGAAATTATTCCAGGCGAGGCCGTGATATAAATTATTTAAAAATAAT
CTTACTTTCCTATAAACATATATAAACATACCGTACTGTGGTAGATATCA
ATTGAAAAAAAAACAAACTCGCCCTTCCCTCTACCCGTCCTTCTACCTTA
AGAACACCCTATTTTTCCTTTTCACTAGACTCTTCACCACGTACATTGGG
TAAGACACTAGCCTTCATTCAATCCATGTTAAACGAACAAATGGACGATT
TGAACCATGCAGAAGATGAGGAAGATGATGACGCAAGCTTGTTCGCTGCT
CACAACGAGTTCGTCAACACAAGGTATGAAAAATTGTGTTTTAGATTGAT
GCCTTTATTGTTTTCGACTTAAGATTTAAAGAGTCTCTTTCGCTAAGTGA
TTCACGAGTCAGGAATCTTGATGGCGCACAATATGACAAAAATATATCAA
GTCTACGTTTTTTCACAATAACATTTTTTACAAATTTTTGAAGTCTTAAG
CCTAAAAATATTCTTAACATGTTCTTTTTTACCATTTTGTGATTATTTTT
GTCCATTTCCAGGAAATCGGGTGTTTTAAAGTCCGCAAATCCTTAAAATG
TTCTTAACTTGTTCGTAATATTTCGGCCATCGAAGCCTTATGTTCTTATN
CATAGATAGAGTTGTATTACAAAAGTGAACCATGTCAATTTCGAAGAATG
ATTGTAGATCAAATTTTAGAACTTCTTTTAAAATAAATTTACATTACGTA
TATTAGACTCTTAGATAAGTGAATACACGTATTTCCTATTAGCAGATTCA
TATAAAAAAGTCACGAAGAAACGTCGAGTAAAGCTCTGATTGGCTGAGAC
ATGCAAAGATTACCTCATACTCTGGACATTTAAAAAAAAAATATGCCTAT
GTGTACAATATTCCACCAATCAGAGCTTTACTCGACGTTTTTTCGTGACT
TTTTACATGAATCTGCTGGTCTCAATTTCCCGACATTCGAAATTTTTCAT
TTCATCTTTGCAGAGAGAATTCGATGAATCAAGAACAATTTTCTTCATCT
CTTTCGACGTCTTTTGGAAACCCAGGGTCGGTTTCATCAACCTCTACCAG
TATCTCCAACGTTGACGGTGAGTGGTCTTCTCTTCATGCATTTTAATTAC
CCGTGTATTGTTAATACTCTTTCAGAAACTTTTGCCAGAACGGGACGAAA
GTAGTACAGGATTTTGATAGGTTTTTATAGCAACGTCTATGACCTTAATT
ACTTGATTTACTTCTCTGAAATTCCGTTTATTTGTCTGAATTTTTTTTAC
AAACGATTTGAATAAGCTTCTTGAAATTATTCCAGGCGAGGCCGTGATAT
AAATTATTTAAAAATAATCTTACTTTCCTATAAACATATATAAACATACC
GTACTGTGTGTAGATACCAATTGAAAAAAAAAACTCGCCCTTCCCTCTAC
CCGTCCTTCTACCTTAAGAACACCATATTTTTCCTTTTCACTAGACTCTT
CACCACGTACATTGGGTAAGACACTAGCCTTCATTCAATCCATGTTAAAC
GAACAAATGGACGATTTGAACCATGCAGAAGATGAGGAAGATGATGACGC
AAGCTTGTTCGCTGCTCACAACGAGTTCGTCAACACAAGGTATGAAAAAT
TGTGTTTTAGATTGATGCCTTTATTGTTTTCGACTTAAGATTTAAAGAGT
CTCTTTCGCTAAGTGATTCACGAGTCAGGAATCTTGATGGCGCACAATAT
GACAAAAATATATCAAGTCTACGTTTTTTCACAATAACATTTTTTACAAA
TTTTTGAAGTCTTAAGCCTAAAAATATTCTTAACATGTTCTTTTTTACCA
TTTTGTGATTATTTTTGTCCATTTCCAGGAAATCGGGTGTTTTAAAGTCC
GCAAATCCTTAAAATGTTCTTAACTTGTTCGTAATATTTCGGCCATCGAA
GCCTTATGTTCTTATATAGTTTGTTTTGTTCTCATAAATGAACGCGACCC
AATTGTTGGTTTATTTCAGACAACGCAGTGTAACGGACGAAAGTGTGGCA
TCCACCAGTCAACATTCGCCCGCATCGCCCGCCCAAAACGCCCTGCAATC
ACCTTTCAATCGCCAAATGAGGGAAACAGCCGAATTCTGTGAATTCTTTT
ACAAAGCAAAGAAAATTGAGAAAGATTTTGCAGAGTTAACTTTGACTGGT
GAGTTTTAAAGAAACCTTAAGGGAAGAAATTTCGATAGGAATTTAATTTG
GTGCATGGGCGAAAAAGTTTTTTCAATGGGAAATTAATTTTGCGGATCAG
GGAAAAAAAAATTGATTCTAGCGGGAATTTAATTTGACGAATGACGGAAA
ATTTTAACTTTGAATATCACTTCTCTCTTTTTCTTTTCAGACCAGGAGCA
AGAAGAGTTATATCGAGCTGCAAATGTCATTCAAACAGCTTACAAAGCAT
ACAAGGTTTGTCGAAAATATTGTTAATACAGAAAAAGATCTAGAAAGCTG
TAATAGTTGGTGAAAAGCTTTTCATGCTTTTCGAGATTTTCGAGATTTTA
ATAAAGGGGGGGGGGGTTGGAAATTATACTTCTGAAAACCCAAAATTGAT
AAACGGGGGCTAATAAGGTCCGGAAAGATTGGAAAATTTTCGAAAAATTA
AAAGGGGGGGGGGGGGGCGTTTATTTGGAACCTAAGAGTACGCTTCTTTT
GAAATGAAGCTAACGATTCAGTTAATGACATTGGAAAAAATAAAGAATTT
CACTGTGACCTTTTTGGTTAATTAAGAACCATGAAAATTTTTCTTTGGTT
TTTCCTGGAGAAGGCCGTGCTCCATTAACCGTTTTGGTTTCTCACCTTGA
AAGATAACCGTCCATATTTTTCTCTTAGGAAAGACGAAAGCAACGCGACC
AAGAGTTTTCATCGGCCACGCTCATTCAAAGCTATTATCGACGGTATAAG
CAGGTAAGATCAACGGTTTTATGGACGAGATACAGTCCAAGCTCTTTTTT
TATGAACTCTCAAAATTAAGCATTCACGTATTCTCACGCTGTTCATTGTT
ATTCAAATATGACAACCTGATTGCCCCTTCTTACACGCATCATCATCCTA
AAGGCGATCGCTCGAACGATCACATTCGTCGTTAGAGCAGAGCTTCATGT
CTTCAGAATGGATAATCAGTTTGGAGAAGATTGATATTGTTAAATCTCAC
CTGGATCTTTATTCTTTCTTTTCTTTATGACCATACAGTATGCAGCCTTC
AAGAAGATGCAAAAAGGTGCCGTGCTCATTCAAAACCAATATCGGGCTCA
TCGAGAAAAATCTAAGAAAAAATACGAAGCTGCCTCGCTGATCCAAACCA
ACTGGAGAAGGTACCGACAACGGAAATGTACGAAAAGCGAGGCAAACAAA
TTGGAACAACAAGCGAGTCGTAGGGTGAATCGTTATCTGCAACAGACTAC
AAAAAGGTAATAATGGAAGGTTAATTTTTGGAGAAAAATTCGTTCACTTT
TAGACTTTACAGAGAACGCAAAAAATGGTTGGTAGGCTTTTATTGGGCTC
TTCCAGAAAAAGTCCGTTCATGGGGGGTGGAGGATGAATTGTCCAGGGGT
ATTGAAAAAATACCAAAANTCTCACCTTGAAAGATAACCGTCCATATTTT
TCTCTTAGGAAAGACGAAAGCAACGCGACCAAGAGTTTTCATCGGCCACG
CTCATTCAAAGCTACTATCGACGGTATAAGCAGGTAAGATCAACTTTTAT
GGACGAGATATAGTCCAAGCTCTTTTTTATGAACTCTGAAAATTAAGCAT
TTTCAGGGTACTTACTCTCTCCGGTCTCTAATAGACGTTCCGCCGCTAAT
ATTTTTTTTCACGCTGTCCATTGTTATTCAAATATAACAACCTGATTGCC
CCTTTCTTACACGCATCATCACATTCGTCGTTAGAGCAGAGCTTCATGTC
TTTAGAATGGATAATCAGTTTGGAGAAGATTGATATTGTTAAATCTCACC
TGGATCTTTATTCTTTCTTTTCTTTATGACCATACAGTATGCAGCCTTCA
AGAAGATGCAAAAAGGTGCCGTGCTCATTCAAAACCAATATCGGGCTCAT
CGAGAAAAATCTAAGAAAAAATACGAAGCTGCCTCGCTGATCCAAACCAA
CTGGAGAAGGTACCGACAACGGAAATGTACGAAAAGCGAGGCAAACAAAT
TGGAACAACAAGCGAGTCGTAGGGTGAATCGTTATCTGCAACAGACTACA
AAAAGGTAATAATGGAAGGTTAATTTTTGGAGAAAAATTCGTTCACTTTT
AGACTTTACAGAGAACGCAAAAAATGGTTGGTAGGCTTTTATTGGGCTCT
TCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAGTTGTCCAGGGGTA
TTGAAAAAATACCAAAATGTCCAGGGGTAATTTTTTGTGTCCACGGGGTT
GATTTGATGTTTGTCCAGGGGTATAACCCGTGTCCATGGGGTTAAAAATC
AAAATGTCCAGGGGTAATTCATGAAAAAAAATAATATATCCTCCACCCCC
CATGAACGGATTTTTTCTGGAAGAGCCCAGCCAGTTGAGCTTACGAGGTT
AATTGGTTTTTCACCATTTTTCCAAACTGTAACTAAATAACATCGATATA
TTAAAATAACCTTTCCTTGCCATTTAGGTTTAGCCGTGAATTTCCAGAAG
AATTCAATGCTCCGTCGACCTCGTCGCAAATCATCGATATTGACTTTGGA
CCAAATAGCTGACAACTATCCAAGAGCGTACTTGCAATTTAACTTATTTT
TAAACTGAATTACTAAAACTGAGAGAAAACCGGGTGTTTATATACTGTTT
TTCTTGTAGAAATTTTTAACTCGAAATATTTATTGAAAGCAATATTGTTT
AAATTTTCGTCTATTTTTCCGTTCAATAGCTTTGCTATTTATTTCATTTT
TTTTTTCTTAAAGCTTTTTATTTATCGCTCATTCACTTTTCACTAAGTCA
TACCAGTTCTGAACAGATACCATGGAGCCGTATAAGCCATTGTGTTTAAA
GCCCGGAGGGATAGGAAGAAATCTTCAAACTTTCCAAGCAAGAAAAGAGA
AATTTGCGCCGCACTTAGATTGACGGATTAAACCAGCCCTCTTTGTTTTC
ACGCGGCGTAATTTTCAAAACGCCAAGTTTTGAAAATAACGCCGCGTGGA
CCTTTTTCAATCCAGCTTTTTTGTTAAAACCACGCGTTTCACGGGTTCAG
ATTGGAAATAAGAAGCTTCATTCATGAGTTTCATCTCTAGTCCCTTCGGG
TCGTAAAAGTCAATTGTATAAGCTTTCCTACGTATCCCGGCTACAAAATA
AATCGAGACAGTCTAAATAGTATTGGAAATCTTGAGGTTCTTTTTCTATT
CGCTTGCACATTATCGATTTAGCCAAAAAAAGACTCGGAAATATGAGAAG
TTGCTTTACACGAATTGGACACTCTTTCTACAATGAGTAACAACAAATTT
TACGAAAATTGTAAATATCAATATCGACCATTATTTAAAGAAACATTCTC
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012375XLOC_012375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022038-exon-sc0000403-1575043694:35488..37409TCONS_00022038-exon-sc0000403-1575043694:35488..37409Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:34961..35064TCONS_00022038-exon-sc0000403-1575043694:34961..35064Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:34437..34581TCONS_00022038-exon-sc0000403-1575043694:34437..34581Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:32562..32740TCONS_00022038-exon-sc0000403-1575043694:32562..32740Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:32305..32369TCONS_00022038-exon-sc0000403-1575043694:32305..32369Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:31807..31881TCONS_00022038-exon-sc0000403-1575043694:31807..31881Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:31304..31521TCONS_00022038-exon-sc0000403-1575043694:31304..31521Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1575043694:29207..30082TCONS_00022038-exon-sc0000403-1575043694:29207..30082Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:35488..37409TCONS_00022038-exon-sc0000403-1510915933:35488..37409Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:34961..35064TCONS_00022038-exon-sc0000403-1510915933:34961..35064Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:34437..34581TCONS_00022038-exon-sc0000403-1510915933:34437..34581Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:32562..32740TCONS_00022038-exon-sc0000403-1510915933:32562..32740Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:32305..32369TCONS_00022038-exon-sc0000403-1510915933:32305..32369Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:31807..31881TCONS_00022038-exon-sc0000403-1510915933:31807..31881Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:31304..31521TCONS_00022038-exon-sc0000403-1510915933:31304..31521Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1510915933:29207..30082TCONS_00022038-exon-sc0000403-1510915933:29207..30082Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:35488..37409TCONS_00022038-exon-sc0000403-1491911889:35488..37409Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:34961..35064TCONS_00022038-exon-sc0000403-1491911889:34961..35064Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:34437..34581TCONS_00022038-exon-sc0000403-1491911889:34437..34581Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:32562..32740TCONS_00022038-exon-sc0000403-1491911889:32562..32740Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:32305..32369TCONS_00022038-exon-sc0000403-1491911889:32305..32369Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:31807..31881TCONS_00022038-exon-sc0000403-1491911889:31807..31881Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:31304..31521TCONS_00022038-exon-sc0000403-1491911889:31304..31521Clytia hemisphaericaexon
TCONS_00022038-exon-sc0000403-1491911889:29207..30082TCONS_00022038-exon-sc0000403-1491911889:29207..30082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:29207..37409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25889	1.19883	0.590118	0.620644	0.039372	0.000989443	0.00620124	0.436198	0.000228726	0.0338355	0.701183	0.00018761	0.00171695	0.00197665	0.407177	0.212643	0.819275	1.00513	0.680381	1.11797	1.01962	0.0553345	1.5504	1.40013	0.00553689	0.000632534	2.84861	1.33644	0.824639	0.569061
Blast
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BLAST of TCONS_00022038 vs. Swiss-Prot (Human)
Match: CMTA1 (Calmodulin-binding transcription activator 1 OS=Homo sapiens GN=CAMTA1 PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 5.108e-18
Identity = 70/246 (28.46%), Postives = 108/246 (43.90%), Query Frame = 1 
Query: 1249 WIQXHKPGAVRLSVLCNSKTLSEEVDFTFVESSEKNWTEKIDHDDWLSISETTLADLLVKRISFISDMV---TGDETN---------------------AARAFNRDALDPTLVEDKLIDVCKSLMSQTVDIDFDYKIE----RTMTVLHLASALGYLKLIQLLMNWVESNPNKI-IQVEACPTCVDQFSLVPIMWASAKGHFTTTCVLHQWAESTIELKDACGCTSLSLAMESGHESLVEYLGRL 1899
            +   H  G V L V  N++ +S  V F +   +    T      DWLS+ +      +++R+  +   +   TG + +                     A  A    AL  +  E +++ VC+ +MS+       + I     R MT+LHLA+A GY  LIQ L+ W   + + I +++E  P  VD FS  P+MWA A GH     VL++W    I + D+ G   L +A   GH  L E L  L
Sbjct:  924 YCPAHDTGLVTLQVAFNNQIISNSVVFEYKARALP--TLPSSQHDWLSLDDNQFRMSILERLEQMERRMAEMTGSQQHKQASGGGSSGGGSGSGNGGSQAQCASGTGALG-SCFESRVVVVCEKMMSRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQTLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMWACALGHLEAAVVLYKWDRRAISIPDSLGRLPLGIARSRGHVKLAECLEHL 1166

HSP 2 Score: 89.3521 bits (220), Expect = 9.801e-18
Identity = 68/188 (36.17%), Postives = 108/188 (57.45%), Query Frame = 1 
Query: 2221 PASPAQNALQSPFNRQMRE----------TAEFCEFFYKA--KKIEKDFAXXXXXXXXXXXXYRAANVIQTAYKAYKERRKQRDQEFSSATLIQSYYRRYKQYAAFKKMQKGAVLIQNQYRAHREKSK--KKYEAASLIQTNWRRYR---------------QRKCTKSEANKLEQQASRRVNRYLQQ 2697
            P +P+ N   SP    + E           A++ EF   +  +K+E +FA+LTL+D EQ ELY AA ++QTA++ YK R  +  QE ++A +IQ  YR+YKQYA +KKM + A+LIQ+++R++ E+ K  +   AA LIQ  +R Y+               Q+K   S   K + QA+R++ R+L++
Sbjct: 1463 PLTPSSNTSLSPVGSPVSEIAFEKPNLPSAADWSEFLSASTSEKVENEFAQLTLSDHEQRELYEAARLVQTAFRKYKGRPLREQQEVAAA-VIQRCYRKYKQYALYKKMTQAAILIQSKFRSYYEQKKFQQSRRAAVLIQKYYRSYKKCGKRRQARRTAVIVQQKLRSSLLTKKQDQAARKIMRFLRR 1649
The following BLAST results are available for this feature:
BLAST of TCONS_00022038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMTA15.108e-1828.46Calmodulin-binding transcription activator 1 OS=Ho... [more]
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