TCONS_00022013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022013
Unique NameTCONS_00022013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022013 ID=TCONS_00022013|Name=TCONS_00022013|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CCGCAAACAAAACTCTTTAACCTCTTTCACAGAAATCGTATGTGGCGATC
ATATTCCAGAATAGACAAAAACgtttattgttaaaaaaatgaccACAAAC
ATTTTTTCACCATTAAAGTGTTACAGCATGGTGGATACGAAGATGAGAAT
CTAAATGACTTGATTGGGTAAATGCTTTCTCACAAAGAGTACATTTGAAA
GGTTTCTCACCAGTGTGGATGCGAAGGTGTTTTTGAAGGTTGCCTAGATC
GGAAAAGGCCTTCCCACAAACATTGCAGTCATATGGTTTTTCACCTGTGT
GCATGCGAAGATGCCCTTGTAAATGATGTGACCGATTGGAAGCTTTTCCA
CAAACAGTGCATTTAAAAGGTTTTTCACCTGTGTGGATACGTTGGTGTCT
CTTTAAATGATACATCTGAGCAAAACTCTTCTCACAAACATCGCATTCAA
ATAGCTTCTTATTATTGTCTAAGTGTGAGTCGTTTTGTAAGTTCGTGTTC
GAAGAAGCTGTGaagcttttatcaaaaagataGTCTGCTGAAGATGATGA
AATTGATTTCTCGTTTGTTAATCCTTTTCCACTAACAGTACATCCGTATG
GTTTATCGTATCCACTTGAATTCACATGAGCATTAAAAAGTCCACCATTA
TTAAATTCATTATTAGATTTATCATTTGTGTGGTGACGGTTATGAGCAAC
AAAGTTATTGACAAATTGGAACCGTTTTCCACAAATACTGCACTGGAAAG
CTTTTTTGTTTGTNGCAACAAAGTTATTGACAAATTGGAACCGTTTTCCA
CAAATACCGCACTGGAAAGCTTTTTTGTTTGCCGCAGCTTTCGAAGCATT
CTTAAAAGTGTTGGTGGCATTTTCTGTTAGCTGACCAATGGAACAGGATT
GCTCAATATTAGAAAGGCTATCAAGATCTTTTTCGTCTACAACGAGATTA
TCGATCAAATGCACTTGTTTATGCTTTTGAGAATTCTTaggttttttaac
attttgatcaaGTGACATACATTCATTATTCATTTTTGCGTTCGTTGCTT
CAATATGATTACTTTTGGACAGAGAACtgactttttgcttttttttaaga
ttttgcatATACCAGTGTTTTTCTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00022013-protein

>TCONS_00022013-protein ID=TCONS_00022013-protein|Name=TCONS_00022013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
KEKHWYMQNLKKKQKVSSLSKSNHIEATNAKMNNECMSLDQNVKKPKNSQ
KHKQVHLIDNLVVDEKDLDSLSNIEQSCSIGQLTENATNTFKNASKAAAN
KKAFQCGICGKRFQFVNNFVXTNKKAFQCSICGKRFQFVNNFVAHNRHHT
NDKSNNEFNNGGLFNAHVNSSGYDKPYGCTVSGKGLTNEKSISSSSADYL
FDKSFTASSNTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTG
EKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKH
LRIHTGEKPFKCTLCEKAFTQSSHLDSHLRIHHAVTL
Run BLAST on NCBI

transcript from alignment at sc0000401:81830..82957

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022013 ID=TCONS_00022013|Name=TCONS_00022013|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at sc0000401:81830..82957 (Clytia hemisphaerica)
ATAAAGAAAAACACTGGTATatgcaaaatcttaaaaaaaagcaaaaagtc
aGTTCTCTGTCCAAAAGTAATCATATTGAAGCAACGAACGCAAAAATGAA
TAATGAATGTATGTCACttgatcaaaatgttaaaaaacctAAGAATTCTC
AAAAGCATAAACAAGTGCATTTGATCGATAATCTCGTTGTAGACGAAAAA
GATCTTGATAGCCTTTCTAATATTGAGCAATCCTGTTCCATTGGTCAGCT
AACAGAAAATGCCACCAACACTTTTAAGAATGCTTCGAAAGCTGCGGCAA
ACAAAAAAGCTTTCCAGTGCGGTATTTGTGGAAAACGGTTCCAATTTGTC
AATAACTTTGTTGCNACAAACAAAAAAGCTTTCCAGTGCAGTATTTGTGG
AAAACGGTTCCAATTTGTCAATAACTTTGTTGCTCATAACCGTCACCACA
CAAATGATAAATCTAATAATGAATTTAATAATGGTGGACTTTTTAATGCT
CATGTGAATTCAAGTGGATACGATAAACCATACGGATGTACTGTTAGTGG
AAAAGGATTAACAAACGAGAAATCAATTTCATCATCTTCAGCAGACtatc
tttttgataaaagcttCACAGCTTCTTCGAACACGAACTTACAAAACGAC
TCACACTTAGACAATAATAAGAAGCTATTTGAATGCGATGTTTGTGAGAA
GAGTTTTGCTCAGATGTATCATTTAAAGAGACACCAACGTATCCACACAG
GTGAAAAACCTTTTAAATGCACTGTTTGTGGAAAAGCTTCCAATCGGTCA
CATCATTTACAAGGGCATCTTCGCATGCACACAGGTGAAAAACCATATGA
CTGCAATGTTTGTGGGAAGGCCTTTTCCGATCTAGGCAACCTTCAAAAAC
ACCTTCGCATCCACACTGGTGAGAAACCTTTCAAATGTACTCTTTGTGAG
AAAGCATTTACCCAATCAAGTCATTTAGATTCTCATCTTCGTATCCACCA
TGCTGTAACACTTTAATGGTGAAAAAATGTTTGTggtcatttttttaaca
ataaacGTTTTTGTCTATTCTGGAATATGATCGCCACATACGATTTCTGT
GAAAGAGGTTAAAGAGTTTTGTTTGCGG

Coding sequence (CDS) from alignment at sc0000401:81830..82957

>TCONS_00022013 ID=TCONS_00022013|Name=TCONS_00022013|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0000401:81830..82957 (Clytia hemisphaerica)
AAAGAAAAACACTGGTATatgcaaaatcttaaaaaaaagcaaaaagtcaG
TTCTCTGTCCAAAAGTAATCATATTGAAGCAACGAACGCAAAAATGAATA
ATGAATGTATGTCACttgatcaaaatgttaaaaaacctAAGAATTCTCAA
AAGCATAAACAAGTGCATTTGATCGATAATCTCGTTGTAGACGAAAAAGA
TCTTGATAGCCTTTCTAATATTGAGCAATCCTGTTCCATTGGTCAGCTAA
CAGAAAATGCCACCAACACTTTTAAGAATGCTTCGAAAGCTGCGGCAAAC
AAAAAAGCTTTCCAGTGCGGTATTTGTGGAAAACGGTTCCAATTTGTCAA
TAACTTTGTTGCNACAAACAAAAAAGCTTTCCAGTGCAGTATTTGTGGAA
AACGGTTCCAATTTGTCAATAACTTTGTTGCTCATAACCGTCACCACACA
AATGATAAATCTAATAATGAATTTAATAATGGTGGACTTTTTAATGCTCA
TGTGAATTCAAGTGGATACGATAAACCATACGGATGTACTGTTAGTGGAA
AAGGATTAACAAACGAGAAATCAATTTCATCATCTTCAGCAGACtatctt
tttgataaaagcttCACAGCTTCTTCGAACACGAACTTACAAAACGACTC
ACACTTAGACAATAATAAGAAGCTATTTGAATGCGATGTTTGTGAGAAGA
GTTTTGCTCAGATGTATCATTTAAAGAGACACCAACGTATCCACACAGGT
GAAAAACCTTTTAAATGCACTGTTTGTGGAAAAGCTTCCAATCGGTCACA
TCATTTACAAGGGCATCTTCGCATGCACACAGGTGAAAAACCATATGACT
GCAATGTTTGTGGGAAGGCCTTTTCCGATCTAGGCAACCTTCAAAAACAC
CTTCGCATCCACACTGGTGAGAAACCTTTCAAATGTACTCTTTGTGAGAA
AGCATTTACCCAATCAAGTCATTTAGATTCTCATCTTCGTATCCACCATG
CTGTAACACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012360XLOC_012360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022013-proteinTCONS_00022013-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022013-exon-sc0000401-1491911889:81830..82957TCONS_00022013-exon-sc0000401-1491911889:81830..82957Clytia hemisphaericaexon
TCONS_00022013-exon-sc0000401-1510915933:81830..82957TCONS_00022013-exon-sc0000401-1510915933:81830..82957Clytia hemisphaericaexon
TCONS_00022013-exon-sc0000401-1575043694:81830..82957TCONS_00022013-exon-sc0000401-1575043694:81830..82957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:81830..82957 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39349	2.40932	1.00534	0.769746	0.0520606	0.123417	0.59559	0.325257	0.162657	0.201477	0.430229	1.05413	0.436471	0.693252	0.394579	0.61164	0.492667	0.564376	0.0820754	0.042943	0.335927	0.327707	1.37217	1.36822	0.0828964	0.295932	0.317608	0.0564934	0.771268	0.7858
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00022013 vs. Swiss-Prot (Human)
Match: ZN568 (Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.311e-49
Identity = 98/246 (39.84%), Postives = 136/246 (55.28%), Query Frame = -3 
Query:  131 QCGICGKRFQFVNNFVA-----TNKKAFQCSICGKRFQFVNNFVAHNRHHTNDKS------NNEFNNGGLFNAHVNSSGYDKPYGCTVSGKGLTNEKSISSSSADYLFDKSFTA-------SSNTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTGEKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKHLRIHTGEKPFKCTLCEKAFTQSSHLDSHLRIH 814
            +C  CGK F    N +      T +K + C+ CG+ F  +++   H R HT +K          F+   +F  H+ S   +KPY C+  GK  +   S++    ++  +K +         S   NL     +   +K +EC  C K+F QM +L RHQRIHTGEKP+ CTVCGKA ++  +L  H ++HTGEKPY CN CGKAFS   NL +H +IHTGEKPFKC  C KAF++ S L  H+R H
Sbjct:  335 ECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSH 580

HSP 2 Score: 157.532 bits (397), Expect = 2.069e-42
Identity = 97/248 (39.11%), Postives = 130/248 (52.42%), Query Frame = -3 
Query:  131 QCGICGKRFQFVNNFVA-----TNKKAFQCSICGKRFQFVNNFVAHNRHHTNDKSNNEFNNGGLFN------AHVNSSGYDKPYGCTVSGKG------LTNEKSISSSSADY---LFDKSFTASSNTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTGEKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKHLRIHTGEKPFKCTLCEKAFTQSSHLDSHLRIH 814
            +C  CGK F   + F+      T +K + CS CGK F   ++   H R+HT +K       G  F+       H      +KPY C+  GK       L   + I +    Y   +  K+F  S  +NL     +   +K + C+ C K+F+Q  +L  H++IHTGEKPFKC  CGKA +R   L  H+R HTGEKPY+CN CGKAFS    L  H+R HTGEKPF+C  C KAF+Q + L  H R H
Sbjct:  391 KCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAF--SQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGH 636

HSP 3 Score: 149.058 bits (375), Expect = 1.784e-39
Identity = 90/238 (37.82%), Postives = 120/238 (50.42%), Query Frame = -3 
Query:  125 GKRFQFVNNFVATNKKAFQCSICGKRFQFVNNFVAHNRHHTNDKSNNEFNNGGLFN------AHVNSSGYDKPYGCTVSGKG------LTNEKSISSSSADYLFDKSFTA-SSNTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTGEKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKHLRIHTGEKPFKCTLCEKAFTQSSHLDSHLRIHHA 799
            GK F    ++V T    F+C+ CG+ F    + + H R H  +K       G  F+       H      +KPY C   GK       L     I +    Y     + A S  +NL     +   +K +EC  C KSF+Q  +L  H++IHTGEKP+ C  CG+A +R   +  H+R HTGEKPY CN CGKAFS       H+R HTGEKP+ C+ C KAF+QSS L  H+R H A
Sbjct:  208 GKPFYHCASYVVT---PFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRNHTA 442

HSP 4 Score: 129.798 bits (325), Expect = 1.066e-32
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = -3 
Query:  203 QCGICGKRFQFVNNFVA-----TNKKAFQCSICGKRFQFVNNFVAHNRHHTNDKSNNEFNNGGLFNAHVNSSGYDKPYGCTVSGKGLTNEKSISSSSADYLFDKSF-------TASSNTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTGEKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKHLRIHTGEK 814
            +C  CGK F    N +      T +K ++CS CGK F  ++N + H R HT +K                      PY CTV GK  + + +++     +  +K +         S   NL     +   +K F+C+ C K+F+++  L  H R HTGEKP++C  CGKA ++   L  H+R HTGEKP++CN CGKAFS   +L  H R HTGE+
Sbjct:  447 ECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEK----------------------PYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGER 640

HSP 5 Score: 127.487 bits (319), Expect = 6.282e-32
Identity = 78/259 (30.12%), Postives = 125/259 (48.26%), Query Frame = -3 
Query:  131 QCGICGKRFQFVNNFVATNKKAFQCSICGKRFQFVNNFVAHNRHHTNDKSNNEFNNGGLFNA-------HVNSSGYD-----------------KPYGCTVSGKGLTNEKSISSSSADYLFDKSFTASS-------NTNLQNDSHLDNNKKLFECDVCEKSFAQMYHLKRHQRIHTGEKPFKCTVCGKASNRSHHLQGHLRMHTGEKPYDCNVCGKAFSDLGNLQKHLRIHTGEKPFKCTLCEKAFTQSSHLDSHLRIH 814
            +C    K F   ++ V + +  + C    K  +   + + + +    +K +NEF       A         N  G D                 KPY C   GK  + ++++ +    +  +K +  +         +NL     +   +K + C  C K+F+Q  +L  H+RIHTGEKP++C  CGK+ ++  +L  H ++HTGEKPY CN CG+AFS + ++  H+R HTGEKP+KC  C KAF+Q S    H+R H
Sbjct:  154 ECKKVAKIFPLSSDIVTSRQSFYDCDSLDKGLEHNLDLLRYEKGCVREKQSNEFGKPFYHCASYVVTPFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSH 412
The following BLAST results are available for this feature:
BLAST of TCONS_00022013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5681.311e-4939.84Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 ... [more]
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