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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022010 ID=TCONS_00022010|Name=TCONS_00022010|organism=Clytia hemisphaerica|type=transcript|length=1222bp
AGGTGATGTACAGACAACAATGAAAGGTTATGTATTTGATTTATCGCCAT
TGAGAACCTCCAAAAATGGGAAGCAATACTTCAAAATGAGCTTAGAATTC
GAAGATGGAAAAACTGAAAAGGCAATTTGCTACTCGTATAAAAAACGTCG
TTTATTCGAGGAAGCTGAGAGGAATGTGATTGGGGTAACAATCTCAAACC
ATAACAGGTACGATAATGGGACAATAAGAATATCTGATAATACGACGGTG
CGTCACGAAGTGTTAGGGTTCAAACCTGAATTCCATGCTGTAATGTCAAG
TATCTCTAAGATAATTAATGAGATCTCGCTAAACCAAGATGTGAATGTAA
TAGGAAAAGTCCTATTACAAGACGTGGAACAAGTCAATGTGTCTGGTTCA
CTCATCGACATGTGCAAGGGGTACCTTTGTGACCAGACTGAATATATCAA
ACTAGTGTTGTGGCGCGAGTATGCCACACTTTTATCGAATGACACAACCT
ATATTTTCAATAATCTGAAGAAATCAATTTGGAACAATGAAACAGAATTG
CATACATGCGGAGCAACTTTGTTTAAGTTGTTCCAATACCCAAACAATAT
GCAATTCAAGCAGCCATTGGTGGATGAGAATATTATCCATCTTCAATAAT
GTAAGATTGTGGGAACAAAATTGTTCCATACTGTTAAATGTGTGTTTTGT
GGGACACGTATCAACTGTTTGGGGCTTAATGCCAATAAATCCGAAGTTGT
TTGTTCTCTCCAAACATGCCAAGGAACATCGGCTCTCTCAAGTTTAGGCC
AGCAGAAATACTGGAACGTTGTAGTCATCTCAAAGGAAACTACAGTCAAG
TTGGATATTCAATTAAAACATCTGCCGGAGATGGAGGACGACCAGATAAA
AATATACCTCATCAATAATACGTTTGATAACTTGTATAGCGCTGTATCGG
GTATAGTCACAACCTTTGCCGTTAATGAAATGACCCAAAAAGATGACTCC
AACCAGAATCAAGCTTCGGTTACAGAAAACTCCACGCACGAAGAAAGTGA
GCAAGACATGTAGTTGTATCATGTAGGTGATTTTTGTGTTGTCTTTGGAC
ATTTTTAAGattatattttatttgtttatttttttacattgttgaaaagt
gaaattttttaaagatgaCATTCATGATTTTAAGACAGTAAGTTAGAGTT
TTTACTCAGAGGATGAACCTAC Run BLAST on NCBI protein sequence of TCONS_00022010-protein >TCONS_00022010-protein ID=TCONS_00022010-protein|Name=TCONS_00022010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
GDVQTTMKGYVFDLSPLRTSKNGKQYFKMSLEFEDGKTEKAICYSYKKRR
LFEEAERNVIGVTISNHNRYDNGTIRISDNTTVRHEVLGFKPEFHAVMSS
ISKIINEISLNQDVNVIGKVLLQDVEQVNVSGSLIDMCKGYLCDQTEYIK
LVLWREYATLLSNDTTYIFNNLKKSIWNNETELHTCGATLFKLFQYPNNM
QFKQPLVDENIIHLQ Run BLAST on NCBI transcript from alignment at sc0000401:31477..32698 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022010 ID=TCONS_00022010|Name=TCONS_00022010|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at sc0000401:31477..32698 (Clytia hemisphaerica)
GTAGGTTCATCCTCTGAGTAAAAACTCTAACTTACTGTCTTAAAATCATG
AATGtcatctttaaaaaatttcacttttcaacaatgtaaaaaaataaaca
aataaaatataatCTTAAAAATGTCCAAAGACAACACAAAAATCACCTAC
ATGATACAACTACATGTCTTGCTCACTTTCTTCGTGCGTGGAGTTTTCTG
TAACCGAAGCTTGATTCTGGTTGGAGTCATCTTTTTGGGTCATTTCATTA
ACGGCAAAGGTTGTGACTATACCCGATACAGCGCTATACAAGTTATCAAA
CGTATTATTGATGAGGTATATTTTTATCTGGTCGTCCTCCATCTCCGGCA
GATGTTTTAATTGAATATCCAACTTGACTGTAGTTTCCTTTGAGATGACT
ACAACGTTCCAGTATTTCTGCTGGCCTAAACTTGAGAGAGCCGATGTTCC
TTGGCATGTTTGGAGAGAACAAACAACTTCGGATTTATTGGCATTAAGCC
CCAAACAGTTGATACGTGTCCCACAAAACACACATTTAACAGTATGGAAC
AATTTTGTTCCCACAATCTTACATTATTGAAGATGGATAATATTCTCATC
CACCAATGGCTGCTTGAATTGCATATTGTTTGGGTATTGGAACAACTTAA
ACAAAGTTGCTCCGCATGTATGCAATTCTGTTTCATTGTTCCAAATTGAT
TTCTTCAGATTATTGAAAATATAGGTTGTGTCATTCGATAAAAGTGTGGC
ATACTCGCGCCACAACACTAGTTTGATATATTCAGTCTGGTCACAAAGGT
ACCCCTTGCACATGTCGATGAGTGAACCAGACACATTGACTTGTTCCACG
TCTTGTAATAGGACTTTTCCTATTACATTCACATCTTGGTTTAGCGAGAT
CTCATTAATTATCTTAGAGATACTTGACATTACAGCATGGAATTCAGGTT
TGAACCCTAACACTTCGTGACGCACCGTCGTATTATCAGATATTCTTATT
GTCCCATTATCGTACCTGTTATGGTTTGAGATTGTTACCCCAATCACATT
CCTCTCAGCTTCCTCGAATAAACGACGTTTTTTATACGAGTAGCAAATTG
CCTTTTCAGTTTTTCCATCTTCGAATTCTAAGCTCATTTTGAAGTATTGC
TTCCCATTTTTGGAGGTTCTCAATGGCGATAAATCAAATACATAACCTTT
CATTGTTGTCTGTACATCACCT Coding sequence (CDS) from alignment at sc0000401:31477..32698 >TCONS_00022010 ID=TCONS_00022010|Name=TCONS_00022010|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000401:31477..32698 (Clytia hemisphaerica)
TTATTGAAGATGGATAATATTCTCATCCACCAATGGCTGCTTGAATTGCA
TATTGTTTGGGTATTGGAACAACTTAAACAAAGTTGCTCCGCATGTATGC
AATTCTGTTTCATTGTTCCAAATTGATTTCTTCAGATTATTGAAAATATA
GGTTGTGTCATTCGATAAAAGTGTGGCATACTCGCGCCACAACACTAGTT
TGATATATTCAGTCTGGTCACAAAGGTACCCCTTGCACATGTCGATGAGT
GAACCAGACACATTGACTTGTTCCACGTCTTGTAATAGGACTTTTCCTAT
TACATTCACATCTTGGTTTAGCGAGATCTCATTAATTATCTTAGAGATAC
TTGACATTACAGCATGGAATTCAGGTTTGAACCCTAACACTTCGTGACGC
ACCGTCGTATTATCAGATATTCTTATTGTCCCATTATCGTACCTGTTATG
GTTTGAGATTGTTACCCCAATCACATTCCTCTCAGCTTCCTCGAATAAAC
GACGTTTTTTATACGAGTAGCAAATTGCCTTTTCAGTTTTTCCATCTTCG
AATTCTAAGCTCATTTTGAAGTATTGCTTCCCATTTTTGGAGGTTCTCAA
TGGCGATAAATCAAATACATAACCTTTCATTGTTGTCTGTACATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022010-exon-sc0000401-1491911889:31477..32698 | TCONS_00022010-exon-sc0000401-1491911889:31477..32698 | Clytia hemisphaerica | exon |
| TCONS_00022010-exon-sc0000401-1510915933:31477..32698 | TCONS_00022010-exon-sc0000401-1510915933:31477..32698 | Clytia hemisphaerica | exon |
| TCONS_00022010-exon-sc0000401-1575043694:31477..32698 | TCONS_00022010-exon-sc0000401-1575043694:31477..32698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:31477..32698 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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