TCONS_00022003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022003
Unique NameTCONS_00022003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022003 ID=TCONS_00022003|Name=TCONS_00022003|organism=Clytia hemisphaerica|type=transcript|length=425bp
ccgtgaTACTAGTGGAATTGATCAAACATTAAATGGTTTTAATATTGAGT
ATAACAACAATTCAATTAATCGCTTTCAAAACACTGCATGTTGCACAAAt
tcttcaattcaaattttagagTGTGATAAAGTAGCAGGTTACACattgat
aaaattcaaaaaagagacGTTTAGTAGTTAACCTATTAGCCTTTTAATCT
TGTACAGACCACCTAATTCTTCAAGAAACACTTTTCGTGAACAACTATTG
CAACTGACAAGTTATGATGATGTAGACATTATTGTAGGAGATTTCAATAT
TGATGCACTAGATCTAAAAAATCAAGACCTAAACGAAATACtttcttcat
tcaaaatgatagTGAATGAACTAACTCATCTTGCTGGTGGCCTTCTGGAC
CATGTTTatacatgaacatataaac
Run BLAST on NCBI

transcript from alignment at sc0000401:16867..17291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022003 ID=TCONS_00022003|Name=TCONS_00022003|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at sc0000401:16867..17291 (Clytia hemisphaerica)
gtttatatgttcatgtatAAACATGGTCCAGAAGGCCACCAGCAAGATGA
GTTAGTTCATTCActatcattttgaatgaagaaaGTATTTCGTTTAGGTC
TTGATTTTTTAGATCTAGTGCATCAATATTGAAATCTCCTACAATAATGT
CTACATCATCATAACTTGTCAGTTGCAATAGTTGTTCACGAAAAGTGTTT
CTTGAAGAATTAGGTGGTCTGTACAAGATTAAAAGGCTAATAGGTTAACT
ACTAAACgtctcttttttgaattttatcaatGTGTAACCTGCTACTTTAT
CACActctaaaatttgaattgaagaaTTTGTGCAACATGCAGTGTTTTGA
AAGCGATTAATTGAATTGTTGTTATACTCAATATTAAAACCATTTAATGT
TTGATCAATTCCACTAGTAtcacgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012350XLOC_012350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022003-exon-sc0000401-1491911889:16867..17291TCONS_00022003-exon-sc0000401-1491911889:16867..17291Clytia hemisphaericaexon
TCONS_00022003-exon-sc0000401-1510915933:16867..17291TCONS_00022003-exon-sc0000401-1510915933:16867..17291Clytia hemisphaericaexon
TCONS_00022003-exon-sc0000401-1575043694:16867..17291TCONS_00022003-exon-sc0000401-1575043694:16867..17291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:16867..17291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.16003	2.4469	2.60051	1.31729	0	0.175031	0	0	0.294031	0	0.665624	0.566029	0.436947	0.34033	0.30474	1.03766	0.694531	0.151634	0.873001	1.03003	2.49045	3.75978	0.424584	1.02729	0	0	3.80717	1.49048	2.36794	2.09824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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