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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021998 ID=TCONS_00021998|Name=TCONS_00021998|organism=Clytia hemisphaerica|type=transcript|length=2925bpRun BLAST on NCBI protein sequence of TCONS_00021998-protein >TCONS_00021998-protein ID=TCONS_00021998-protein|Name=TCONS_00021998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=913bp MSSEKRKRKSEGMNIPIETKRQFIDARRDDRSKKTKRSNEHTNKFAYSVERun BLAST on NCBI transcript from alignment at sc0000401:273183..283527- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021998 ID=TCONS_00021998|Name=TCONS_00021998|organism=Clytia hemisphaerica|type=transcript|length=10345bp|location=Sequence derived from alignment at sc0000401:273183..283527- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000401:273183..283527- >TCONS_00021998 ID=TCONS_00021998|Name=TCONS_00021998|organism=Clytia hemisphaerica|type=CDS|length=24678bp|location=Sequence derived from alignment at sc0000401:273183..283527- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021998 vs. Swiss-Prot (Human)
Match: POP1 (Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 2.067e-33 Identity = 90/257 (35.02%), Postives = 137/257 (53.31%), Query Frame = 1
Query: 172 PRGINVLEYAEARAHEICNLKSAIAEAKKGYNVHTLQKLPRHMRRRAGNHDVKRLPRRLRDSAVTNIAXXXXXXXXXXXXXPNRHQRRKPKNLFEEYKRRQDKCTWLETHIWHAKRCYMNEKWGYKIATKTFSKAVRSSYRAAKSSCLIQDISFNEIIEVTGKVESIRDCMKKLGNITDMESTHNCTKFI------EFVAYQNDQYPRGAIGPIKLLWIS--SIDEATTKCNAVIISHTAISKQVIKEIESFNKTLD 918
P+ I +A+ARA EI + A+ + K N Q LPRHMRRRA +H+VKRLPRRL++ A A+ K + K RR N E+ RRQ K WLETHIWHAKR +M +KWGY + + K+ R+ YRA + CL+QD+S+ +E+ GK E I + + NI D T + V Y+ ++YPR +GP+ +W S + + + I H + + +++EI++ + ++
Sbjct: 99 PKYITASTFAQARAAEISAMLKAVTQ--KSSNSLVFQTLPRHMRRRAMSHNVKRLPRRLQEIAQKE-AEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLETHIWHAKRFHMVKKWGYCLGERPTVKSHRACYRAMTNRCLLQDLSYYCCLELKGKEEEILKALSGMCNI-DTGLTFAAVHCLSGKRQGSLVLYRVNKYPREMLGPVTFIWKSQRTPGDPSESRQLWIWLHPTLKQDILEEIKAACQCVE 351 HSP 2 Score: 121.709 bits (304), Expect = 5.675e-28 Identity = 72/220 (32.73%), Postives = 112/220 (50.91%), Query Frame = 1
Query: 1075 TVLNLNVKDPRLYLPKKKQNALLLDKDIPSDQKDEIKEDLNGHATLSKIFTE--YSDIWDKQKRMFSSNSKIADHDINESKAELLYSDDNKPVV-ESCQIPVCILKTPGNSTNH----FAKGFEMILPSNWAMPFWIALVYQGARAGCLEEAANVSYEASILHFPRDYIDTNVGKAVNDEKAQELHNHYNRVPPAKRISYEPLGVRCPYFLPWQDLISQW 1713
T+L L V DPR+ LP+KK AL P+ +K + E + L + E +S IW++ + +KI+D D+N ++ELL + +IP+ +++ PG T + G++++LP W M FWI +Y+G R G L+E+A S + P D+ D G +E+A+ L Y R PPAKR +Y LG P+ PW+ L W
Sbjct: 503 TILGLTVGDPRINLPQKKSKAL------PNPEKCQDNEKVR-QLLLEGVPVECTHSFIWNQDICKSVTENKISDQDLNRMRSELLVPGSQLILGPHESKIPILLIQQPGKVTGEDRLGWGSGWDVLLPKGWGMAFWIPFIYRGVRVGGLKESAVHSQYKRSPNVPGDFPDCPAGMLFAEEQAKNLLEKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQDW 715 The following BLAST results are available for this feature:
BLAST of TCONS_00021998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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