TCONS_00021964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021964
Unique NameTCONS_00021964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021964 ID=TCONS_00021964|Name=TCONS_00021964|organism=Clytia hemisphaerica|type=transcript|length=2330bp
AAAATAGTTAGTACATGCGTTTACTAATTATGCTTTCATGTACTAACTTT
CGATTGTTAAAcacaacaaaagaattttgacaaaataaaatcatGGATGG
TAACAGAGGCTATCGTAATGGTGGGAGTAGCAGTCATGGTGCAGATTTTG
CACGGAAGCATGATGACATCAAACTGACCAAAGAAGAAACAGAATTTTTG
GAGAAACAGTTTTTGAAGTATTTAAGTCAAGAAATGGAGAAAAACTCATC
AAATTGGAATcaattttatgatattttgaaagaagaaaCTACTAGTGGTG
CGTCAGGAAGGCAAGCAGATGGGAGTGATGGTTCTAATCACGAAACTGCT
ACACAGGGTAGTTCCAAAGCATCTCAAGACACCTCAGATCAGCACAACAA
AGGTTTCAAGGTAAACACAGAGAAAACTAAACAACAATACAGGGGAACAA
ACAATGAAGAACAATCAAAATGGAAGAATAAGCAAAACCAAACAACGAAT
CATGACAGTCAACAGAAACATCATACCGAACAAAGAAACTCTCAACAGCA
AAAGGCGCAAAAAGAGCAACCCAACACCGACAATGGTCCATTTAGCAGTA
CTGAAAATAACAAAAGTACCAAACAATCCAAAACCAAAAAAGGTAGAAAG
GCTGAAACTGAAAAGGAACGTCCAAGGGCTAAACAAAAACATTCTGCTAA
AACACCTACAGCTAATTCTCAGCAAAATACATCATCCACACCGAAGAAAT
CAACTAAAacagataaaaagaaaattgttgagGATCCTGCTCCAAGCACA
AACATAGTAGTGAAAATCTTGAGGATTATCAAAGAAGTATTGATTATCTT
TGCGTGTTTCGCTCTGATGATTCTATTGTTCGCATTGAAGTTTCTATGGG
CTGTtagtaaaaagattttgaagtaCACGTTGCTGTTGATTCTCTATGTT
GTGGCAACTCTTTTGGGATTTTGTATGATGCTAAACCAACGCTACCAAAT
CATCACCAAGCTCATCAATTTTACCAACAATGCTTTAGAAGTTATTCATC
TGGTCCTGGGAATAGATCTCAAAGGATGGTTCCGTCGCCGTGGTAACAGA
TCTTCAACTAAATCGACTTTTGATGATGGCCCACCTCCTCCTTtgccaga
aaattctgaaaaggctatacagtttttattgaaagaaaaccCAGACCGAC
CATACAGGATTCTTTGTGTAAGCAATACAGACAGTGTTGATCAGATTCGA
AACCATTATCGAAAGTTGGTGCGGCTGGTCCACCCTGACAAGTGTAATCT
GCCACAAGCTGAAGATGCTTTTAAAGTTTTAGACACAGCCTTCAAGAAAC
TAGCTGACCCTGAAAAACGCGAAGAGATAAACTCGGAGATGGAGCGTCAG
AANCTTCAAGAAACTAGCTGACCCTGAAAAACGCGAAGAGATAAACTCGG
AGATGGAGCGCCAGAAGGCCTGGGACGAGTTCAACAAAAATATGTCTGAA
GACTATAAAAATATGTTTGAGGAACTTCTAAATACGATACAATGTTCGTC
TTGCGAGAAACGTCATAAGAAAACCTTGGTTGAAAAGCGGACTTTCATGG
AAGCTCGGTTTTGTGCCGAATGTAATACAAAACACCCAGCCGAAGATGGC
GATGTTTGGGCGGAAGTTGGAATGTTGGGCGTTAACTGGACTTGTTATGC
TTGCTTTGATGGAGAGgTTTATGAGATAACAGATTGGGGAAAGTGTCAGA
ATTTGAAACAAGCCATCCCTGTCAACCATCACCGTGTCTTTTGTCACGTT
GGAACGCAAGCAGCGAACAAAAGTGGACGCTCAAGAACGCCACGCAACTC
GGAAGAAAGtggTAATCGTGGAACTAAAcgcagcaaaaaaaacaaacgaa
gAAAATGAAGCGATGGAAAGGGAGAACGTTTTCCCATTGCATGTCACTTG
TGAATCTGGTCGTCCAACTTATAAAAGGATTACTGCTAAATTGAGTCAAT
TCACTTCTTGTGCAAGGACTATGTCAAACTGTCACTGTAAGTTTGGACAA
AATCTAGGTTTTACTAACAATGACGATGACGAAGATTGTTTGATGATGTG
AAAGTGCTTTTTAAATGATATTGCTGTGATTAGGTGTCCAATAAATAGGG
GCCACTTTGTTAATTTTTCCTACCCGAGCGCCAAGGTCCTTAttctgctc
taaatagcctggtttCACAGACTATTACTCCCATATTTTGAGGGTATTTT
AGGTAAAATTTCCAGTTGTGTTGAAGTATTTATAAGATGTTtacataatt
ggttattcaaaacaatagagataacgcgtt
Run BLAST on NCBI

transcript from alignment at sc0000401:166199..178340+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021964 ID=TCONS_00021964|Name=TCONS_00021964|organism=Clytia hemisphaerica|type=transcript|length=12142bp|location=Sequence derived from alignment at sc0000401:166199..178340+ (Clytia hemisphaerica)
AAAATAGTTAGTACATGCGTTTACTAATTATGCTTTCATGTGTAATTGTT
GTGATGCTgaccaggcggtgtcaatcaaacaacttcaaacaaaaattgca
atcaaaccaatcgaatgtaatcgaacacgatcgaataattgcaattcaat
tgtcgaacgtaatggaatctcaatcaaacggccgattcctgggtaatatt
tgattttgtttgattgtgatcaagtaaggttagattggttcgattaatag
ttGGCTACCTTTAaggcgagaaatttttagtcaatttcgcaaaattaaat
accCGCGAAATGTTTAGGAGTCGCATTTGCGAAAATTTATACccgcgaaa
ttcaatttttaaacttttagaaAGATTATCGCTTTTTCCAAGTTGCAGAC
AcaaaaaagattaatttttttttctgattcgcgaaaataaatacCCGCAA
AATTTTCTCGCCTTAAGGtatgttccattggttcgattgattgtcaatta
cactcaattaatcttcgatttcgttcgattacaattatgttcgataagtt
tgattgtgattaaattaaattggatcactccgttagagctttttagcgtg
ggtggccgagtgcttaagtatcgtacgaaagcgagtaaaatctaaatcaa
tcagacgtaatcgaacataatcaaatacaatcgaagcaatcgaacggcaa
atcctgggtaatattcaattgagatTCATTTGTGTTCGACAattgaattg
caattattcgattgtgttcaattgcgttcaatttgttcgattgacaccgt
ctggtgcTGAAGTTTTGATTCAATTTAACATGATATTGTGCCTATAAGGT
CTATTATGTTGTAGTTTCCAGGGAGGTTGATAAGAAAAGTTattcaatac
ccctgtataattttttttagaatagtCCATGAAGAAAGTGCAATATCTTT
TGTTTACtccagtcattttttcttttgctatTAGAGAGAAATTATGCTAT
AACCATGTAAATTGATGGAAAAAAGAACACAACTTTTCACGACCCATGAT
AAGGCCcaaaatcagtgattttgaaCTTAAAGAAAGTCCTgaacattttg
caaaataattgggaaaaaatgaaaattctcaaACAAAAAACTGGCTCCAA
TGGCAGAAATTCTTGAATCTGATTGAAGAAtgttttttgactaaaaaaat
gaGACTTAGAAGATTAAAAAGTATATAATAATACTGTATGCTGAAACTTT
TACCTGAGTGATTTTGacatttcatagtttgcacccccccctttttaata
ggggggatgccaactttctTGAGGGTctttgtagggggggtaccgagatc
tgccgaaaaaactaggggggatgggaatgtagggggggatcaaataaaaa
agggggggtttggaaattttggtcaaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGG
CTCGTGACTATAAtacttcatactctttcttgttgataattttgctggta
ggtgggaaagcgagtttccttcgaaacggattttctgttaaaaaaaaggg
gggataaaatttcattacaaaagggggggatgggtatatagggggggatg
aaataaacctaggggggttcatacccctctgcaaactatgcaTTTTTTTC
TAGGGTTCAACATTTTCtagaattatatttttgcaaaatttaagtttaaa
cCCTCACCTTATCATTTAGACTAACTTTCGATTGTTAAAcacaacaaaag
aattttgacaaaataaaatcatGGATGGTAACAGAGGCTATCGTAATGGT
GGGAGTAGCAGTCATGGTGCAGATTTTGCACGGAAGCATGATGACATCAA
ACTGACCAAAGAAGAAACAGAATTTTTGGAGAAACAGTTTTTGAAGTATT
TAAGTCAAGAAATGGAGAAAAACTCATCAAATTGGAATcaattttatgat
attttgaaagaagaaaCTACTAGTGGTGCGTCAGGAAGGCAAGCAGATGG
GAGTGATGGTTCTAATCACGAAACTGCTACACAGGGTAAGTGAGTCGTAT
CTAANGGCAGATGGGATTGATGGTTCTAATCATGAAACTGCTACACAGGG
TAAGTGAGTTGTATCTAATTAAGACGATTTTTTTAGCGAAATTTCACAAC
AAATCTTTTTATAGGAATAGGAAGCAGATGACAAGTCTGTTAGCCAGCTT
TTAGAAATTGATTTTAGAATAACATCAAACTATAACTTGCTGATTTATTC
AAAAACACAACATTATGCACCTTAAATCcacatatttttttgaaataaaa
caaataaaaacagaaaGTAGTTAGAAAGTTTTATCAGCTTTCAACATAAT
GATGAGATTGAAGTTTAAGATAAAACTGTAATTctgtaacttttattttt
tatagttCCCTTAAAATATGTGCTTGCGTTGTATGTGCCTGCAATTAAAA
gtgcaattaaaaaaaaacaatcttccaaagagataaaaaagaaataattt
tccttaacaTTTCAGGTAGTTCCAAAGCATCTCAAGACACCTCAGATCAG
CACAACAAAGGTTTCAAGGTAAACACAGAGAAAACTAAACAACAATACAG
GGGAACAAACAATGAAGAACAATCAAAATGGAAGAATAAGCAAAACCAAA
CAACGAATCATGACAGTCAACAGAAACATCATACCGAACAAAGAAACTCT
CAACAGCAAAAGGCGCAAAAAGAGCAACCCAACACCGACAATGGTCCATT
TAGCAGTACTGAAAATAACAAAAGTACCAAACAATCCAAAACCAAAAAAG
GTAGAAAGGCTGAAACTGAAAAGGAACGTCCAAGGGCTAAACAAAAACAT
TCTGCTAAAACACCTACAGCTAATTCTCAGCAAAATACATCATCCACACC
GAAGAAATCAACTAAAacagataaaaagaaaattgttgagGATCCTGCTC
CAAGCACAAACATAGTAGTGAAAATCTTGAGGATTATCAAAGAAGTATTG
ATTATCTTTGCGTGTTTCGCTCTGATGATTCTATTGTTCGCATTGAAGTT
TCTATGGGCTGTtagtaaaaagattttgaagtaCACGTTGCTGTTGATTC
TCTATGTTGTGGCAACGTTAGTATTcatgatgatatttttttttcccaaa
ttcttataaaaattttcccaaTGTATTACTTAAccaaaggaaaatatgat
gcatcaaatgaaagaaaatcAGAAAGGTTTTACAATGCAGCACATGCATA
ATCATGAATTGTAATCTAcatgatttttgttcaaaacacTTTGATTAACA
AAAAAGTAGAACTCCATTCTTCTTGCAAATACAATGACGACATAAAATTT
TGACTTAGGTCATTGATTCATTAATGTGTGTGTTTATTTATTAAAGTAGT
GCTAAGGAATGGATCTTGGATACTGTTCGATCAGAATTTCTGTCCTTTTA
ATACTATTTGTAGAGGACCCATCATCATTTAATTGTACTGTACATTTTAA
AAACTAAATCTTTTCACTTTTACTTTTACAGTCTTTTGGGATTTTGTATG
ATGCTAAACCAACGCTACCAAATCATCACCAAGCTCATCAATTTTACCAA
CAATGCTTTAGAAGTTATTCATCTGGTCCTGGGAATAGATCTCAAAGGAT
GGTTCCGTCGCCGTGGTAACAGATCTTCAACTAAATCGACTTTTGATGAT
GGCCCACCTCCTCCTTtgccagaaaattctgaaaaggctatacagttttt
attgaaagaaaaccCAGACCGACCATACAGGTGTGATATAATTTTCATAT
ATTGATAGCCCctaataaaagattttctttttaattttctcgAGAATTGA
GTTGTAGATGTGTcatcttttttggacctacctcggaggtccaataaatt
aaccgatgtccgtccgtccatTTGTCCGTcgccgttcgtccgtctgttac
cagcttttctcaggattggctcattagttttttctgatttttggcacaat
gatgcaaaatggcaatggccaaaatgtgacggagcccgatttttgagaaa
agaaaattttccggccaaaaatgccggaaatatgccggaaaaactgtttt
tttggcattttctcgagattttatcattaaagtctatccagatataattg
gcagtggaaacaagaatgcctgtaacttttgatagtcaaatataattatg
gaatttttttttgcttgtttcagagaatcaaaagcgctatatttgaatgt
ttttttggttgaaaaattcgcgatttttatcggttaaatttgcgattgta
aaattttagcttttttttctacttatgttATAACGTTCATTTCTACATCA
GTGgcagttcaaccttaggttaagaagcttgttaaatttcaaggcaaaca
gaaaagtccttcggaagatatgggacccgaaataccctttggtagcactt
ttctgtgaaatatcaaatctcaaacttattactaaaaacgggggtagtga
tatgatagataaaacagtttttcgatcataacacattttgcGATCTGTTT
AATGACCTcgtagccaaactgtgtttagtgttttgggaattagcaaagtt
ctttgatgacttaaaaataacaaaggcaatataaattcatgcttatcttt
tcaacaaaaacaattatactgtgatttcacttcgtttcgaaataatcaat
gataccaataataccaatgcaccaacacattttccaacttttaattgcgc
tgttcaaaaaagataacataacccccatttttagtaataagttggagatt
tgatatttcacagaaaagtgctacctaggggtatttcgggtcccatatct
tccgaaggacttttttgtttgccttgaaatttaacaaacttcttaacctt
aggttgaactaccactggtgtaaaaatgaacgttataacataagtagaaa
aaaagctgaaattttacagtcgcaaatttaaccgataaaaatcgcgaatt
tttcaaccaaaaaaacattcaaatatagcgcttttgattctctgaaacaa
gcaaaaaaaaattccataattatatttgactatcaaaagttacaggcatt
cttgtttccactgccaattatatcaggacagactttaattttttctgatt
ttttgctcaaagatgcatattaacaatgcccaaaacatgggcgagtccga
tttttgagaacattttttttctggccaaaaaatgccggaaatcgtcgtat
ttctggattttcattggactctttccttataattggttgttttttcattc
aaaaacattattaatagcaatggaatgcccaccatcaagcatgtttcaat
tttcactaaaattgatttttgaagccggaactatttaaaaatcaccggaa
caacctattttcgccggaaagacagtatttcttgaatttctcgagctgta
ctttatatttttttatgaaattttgcacactgatgcaaaatggcaatacc
taaaatgtgacggagcttgatttcgaaaaacatttttttccggctgaaaa
tgccggaaatatgccggaaaaaatgtttttttgacattttctcgaatttt
catccttatttttttcgttttatgcctttgttttttcaaacaaaaacatt
atttataagaatgtccactaTTAAGAATGGTTCAATTTttaatgaaactg
attttggtacaggagctttctaaaaatcgccagaacagcctaGAATCGCC
Ggctttcttgaatttctcaatttgttcttgtattattctgcattttcata
ctattgttgtcatttttcGATTGTcatattacatcaatcttcaggtagct
ccattcagcatgtagcttgttgtTTTGGAAAGGAGAGATAAGCttttaat
tttgattggttattttATGATATTCTTAGGTTGTTCTCAAATGAGTAAAA
TAGTTTTAGAGATGAGTGCAAAAAGGTCGAATTTTGACTCCaatcaatta
aaaaaagttttcatcgAAATAATAtttcacttgtttgcaggattCTCCCT
TAGATCAAGGAACTTTAAAGggttatttttacataagtgttcccgtttca
tatcagacacatatttcatatcaggacagtgtttgcctattgttatatta
tgctgatataaacaaaaaatgtttatttcttcatctttctgaccaatctt
gctccacatccgtttcaatccaatgtgaaaaagtttaattaagattgatg
agtaagcaaacgatatcacccttatttaaaaataaaacctttaatttgcA
CCTTCTTCattgctttctttttcttaaattcttgattttcgattttcttt
aAGGATTCTTTGTGTAAGCAATACAGACAGTGTTGATCAGATTCGAAACC
ATTATCGAAAGTTGGTGCGGCTGGTCCACCCTGACAAGTGTAATCTGCCA
CAAGCTGAAGATGCTTTTAAAGGTAAGCATCTTATTATTTTTGGACCCTT
TCCTATAAAATCTCCCATTTTTTCTATGATGCATGTCTTTACAAGTACAT
TAATATATTTTTAAGCCTTATAATTCATTGTTCTTAATTCCACCATTAAA
TGAGTATTTGTGtccaattttcttaaaattggatGCTTTAGTGTTCATAA
AGCCTAGAATcttctaaaattgttcttaatattttttccatCGAAGCCTT
GGAAAAGACtcagtcaaaaaaataaattgtaaCTCGAATTCTCGTTGATC
AAACTAACGATATTCGATTGAAGATTTCTAAATGTAATCAAAATCCTCTC
CAGTTTTAGACACAGCCTTCAAGAAACTAGCTGACCCTGAAAAACGCGAA
GAGATAAACTCGGAGATGGAGCGTCAGAANCTTCAAGAAACTAGCTGACC
CTGAAAAACGCGAAGAGATAAACTCGGAGATGGAGCGCCAGAAGGCCTGG
GACGAGTTCAACAAAAATATGTCTGAAGACTATAAAAATATGTTTGAGGA
ACTTCTAAATACGATACAATGTTCGTCTTGCGAGAAACGTCATAAGAAAA
CCTTGGTTGAAAAGCGGACTTTCATGGAAGCTCGGTTTTGTGCCGAATGT
AATACAAAACACCCAGCCGAAGATGGCGATGTTTGGGCGGAAGTTGGAAT
GTTGGGCGTTAACTGGACTTGTTATGCTTGCTTTGATGGAGAGGTATTGT
CTTACTTTTTTCATATCAGGAACCTTTTTGAATGGTGAGGTATAATCAAT
CTTTAACGAATTTTCAGTGAAAAGATTCTCtttcaaaataataatgaaaT
AACGTTCTTGCAAAAAACATCCAGATGATACTTGGGTGACTATTACGTCC
TTGACTAGACTTTCTTCtatttcaagcaattttagaACATCATTAATAAA
GGGACATCAAAGTAGTAAAATGCAAACATTGCGCGAACATGTGTCAtcaa
agagaacaattaaaatcacgtgtccaaaacaaacttgtaaaacaattgaa
caatcaaaattagccatatttggtttgattttttattttgacatgtgaca
tttgttttgattttgtatccgctgcatacagtttgtttacaaatttcgaa
agtactgttatgtccctttaagagtAGAGTGATAAAATTGTCATGATCAt
acttttccatttttcaggTTTATGAGATAACAGATTGGGGAAAGTGTCAG
AATTTGAAACAAGCCATCCCTGTCAACCATCACCGTGTCTTTTGTCACGT
TGGAACGCAAGCAGCGAACAAAAGTGGACGCTCAAGAACGCCACGCAACT
CGGAAGAAAGGTATGTGTTTTACTGTTTGGTATATTCTattcatgatatg
caacactggagagtgttctgagaattttcaaaaagttcaacccaatacgt
cacttaaacaatagaaaaagtgacgtattgggttgaactttttaaaaatt
ctcagaagactctccagtgttgcatatcatgaattgcaatgtcttccact
tCTTTAGGCGCCATTTACACAATGTAATTTTTATACCAACCCAAAAATTT
TAGCCAACATTAATCCTGTCTGACGATGTTGAAGTATCTTGGCAACCATA
CTTTAAAAACAAGGCTTGCAATTATTTTAAAGCATTTCTATAAACATTAA
TTCTTTCACTAAGGCCAAATTGAAAAGTGgtcaaccaaaacacaaaatca
aaaatcttacaaacaaaataagtaactgtgatttttttttaaaataaccc
TTAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNatatcactcaaaaacaggggtggtacctggaaatcttttctgaaaa
cagttactaccaaggtgtagtaactgcaaagggtggtggtcctgaaaaaa
agtgttgaataagcacttactacacatcatgtcttgtagtaactgcgtgc
ccccccctgcTAAACGatcaaaatcgcttcagcaccatggaaatatgcta
attagagtctttggaagtagcttacttgcttgcaaggttgcgtttttatg
ttttttgcttaaaaaagccttaaaaacgcttaaatagagctttttaagcg
tttttaagctattttagtgaaaatttgtcggttctgcccccttcgctgga
cttcaatgggtctagtccattgcaggggagtgtcctacaaggtttatgac
cattgggaaccagctcagccctgtatggagctcagaataagcttaaaact
aaggctccagcacagcgctgtaagcttacagcgtaaagcccaggcggctc
tggaggcctaaaaaccggttttctggcaaaactactgttcctagctggTT
CTAAATCCTTTAAATCACTTCAgtaccatggaaatatgctaattagagcc
tttggaagtagctcactcgcttgcaaggtcgcgtttttacgtttttttgc
ttaaaaaatataataatctttcctgtaaaatttcctaattattatcacca
ttatggttgaacaataaaaatacagttCCAAGGTTTTGAAATGAACTGAA
TAGTAAAAATGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTCATGAT
ATGATGTGTCACTTCACTAGTTTCAGTCAACATTTCTTACGCTattgctg
attttgaaaaataggaatTTTTTCCTTCCGTGACGGTGTCCTTACGTGAC
ACTGACCTTTCTCAGTTGCAAAGCCCTGTAGccattgaaattaatttttt
tgactcaGTTCTTTTTTCAATGACAAGCAGATAGACATAAGTTTCTTCTA
GTGGTaatttggttttaaaattctctttaaattcacaggaatctgaatca
gcatacttttgtcttttttaatgtctttgctgcgttccttccgtgacaga
accttcaaagttcaattattcaacgaggaaaaacttttatgaaatttata
tTGGTTTGGAAGTAGTAGTACTATGAAGGCTTTAATTCAGGACTAATACT
ATTTTCATTAagtttaccatttttcaaaaatagaccaaaaaagGCTCTGA
TTTCCTTCCGTGACAGAAACGGGACTTTTCAATTTGGCCCACTAGGTCTG
TATTTTTGTAATACACATAGACCAAAtgatttttaatgtttaaaagTCCA
TGAAATTAATACACCAGCCCCCTTCTAGATGACGCCGTTCTTCATGGCAA
TTATTAGTCAAactcttttaaaaatttaaaaaaagaaaaaaaacccgCGG
TGAGATAAGATCCAATGTGATGTGAAATTTCCTTGTGTTAATTTAAGCTT
CtgctctttaaaaattttcagtggTAATCGTGGAACTAAAcgcagcaaaa
aaaacaaacgaagAAAATGAAGCGATGGAAAGGGAGAACGTTTTCCCATT
GCATGTCACTTGTGAATCTGGTCGTCCAACTTATAAAAGGATTACTGCTA
AATTGAGTCAATTCACTTCTTGTGCAAGGACTATGTCAAACTGTCACTGT
AAGTTTGGACAAAATCTAGGTTTTACTAACAATGACGATGACGAAGATTG
TTTGATGATGTGAAAGTGCTTTTTAAATGATATTGCTGTGATTAGGTGTC
CAATAAATAGGGGCCACTTTGTTAATTTTTCCTACCCGAGCGCCAAGGTC
CTTAttctgctctaaatagcctggtttCACAGACTATTACTCCCATATTT
TGAGGGTATTTTAGGTAAAATTTCCAGTTGTGTTGAAGTATTTATAAGAT
GTTtacataattggttattcaaaacaatagagataacgcgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012330XLOC_012330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021964-exon-sc0000401-1491911889:166199..166239TCONS_00021964-exon-sc0000401-1491911889:166199..166239Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:166199..166239TCONS_00021964-exon-sc0000401-1510915933:166199..166239Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:166199..166239TCONS_00021964-exon-sc0000401-1575043694:166199..166239Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:168218..168533TCONS_00021964-exon-sc0000401-1491911889:168218..168533Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:168218..168533TCONS_00021964-exon-sc0000401-1510915933:168218..168533Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:168218..168533TCONS_00021964-exon-sc0000401-1575043694:168218..168533Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:169014..169614TCONS_00021964-exon-sc0000401-1491911889:169014..169614Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:169014..169614TCONS_00021964-exon-sc0000401-1510915933:169014..169614Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:169014..169614TCONS_00021964-exon-sc0000401-1575043694:169014..169614Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:170030..170278TCONS_00021964-exon-sc0000401-1491911889:170030..170278Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:170030..170278TCONS_00021964-exon-sc0000401-1510915933:170030..170278Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:170030..170278TCONS_00021964-exon-sc0000401-1575043694:170030..170278Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:172852..172970TCONS_00021964-exon-sc0000401-1491911889:172852..172970Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:172852..172970TCONS_00021964-exon-sc0000401-1510915933:172852..172970Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:172852..172970TCONS_00021964-exon-sc0000401-1575043694:172852..172970Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:173302..173691TCONS_00021964-exon-sc0000401-1491911889:173302..173691Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:173302..173691TCONS_00021964-exon-sc0000401-1510915933:173302..173691Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:173302..173691TCONS_00021964-exon-sc0000401-1575043694:173302..173691Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:174166..174308TCONS_00021964-exon-sc0000401-1491911889:174166..174308Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:174166..174308TCONS_00021964-exon-sc0000401-1510915933:174166..174308Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:174166..174308TCONS_00021964-exon-sc0000401-1575043694:174166..174308Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1491911889:177870..178340TCONS_00021964-exon-sc0000401-1491911889:177870..178340Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1510915933:177870..178340TCONS_00021964-exon-sc0000401-1510915933:177870..178340Clytia hemisphaericaexon
TCONS_00021964-exon-sc0000401-1575043694:177870..178340TCONS_00021964-exon-sc0000401-1575043694:177870..178340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:166199..178340 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.78289	6.786	2.05919	0.90421	5.81072	5.56962	6.64506	5.44448	5.02054	8.88978	5.65338	5.00117	3.53493	5.455	4.03303	5.79238	3.89628	3.99593	1.90969	3.0887	6.62965	3.29419	9.0239	6.21211	5.79325	4.93951	1.18349	1.37892	6.06475	7.92887
Blast
[Close]
BLAST of TCONS_00021964 vs. Swiss-Prot (Human)
Match: DJC14 (DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.072e-22
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 1 
Query: 1414 LADPEKREEIN----SEMERQKAWDEFNKNMSEDYKNMFEELLNTIQCSSCEKRHKKTLVEKRTFMEARFCAECNTKHPAEDGDVWAEVGMLGVNWTCYACFDGEVYEITDWGKCQNLKQAIPVNHHRVFCHV--GTQAANKSGRSRT 1839
            +++ EKR+E      +E E  ++ +EF   + +D K    E +NT+ CS C+ +H++  ++ R    AR+CAECN  HPAE+GD WAE  MLG+  T +A  DG+VY+IT+W  CQ +   I  + HRV  H+  G++     GR R 
Sbjct:  494 VSNAEKRKEYEMKRMAENELSRSVNEFLSKLQDDLK----EAMNTMMCSRCQGKHRRFEMD-REPKSARYCAECNRLHPAEEGDFWAESSMLGLKITYFALMDGKVYDITEWAGCQRV--GISPDTHRVPYHISFGSRIPGTRGRQRA 634
The following BLAST results are available for this feature:
BLAST of TCONS_00021964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJC145.072e-2238.51DnaJ homolog subfamily C member 14 OS=Homo sapiens... [more]
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