|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021948 ID=TCONS_00021948|Name=TCONS_00021948|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CTCGTTGTTCGCTTATCATCTGAAAAAGAATGATGGTCTCCACTTATAAT
CTTCTTGTGTTTCACAAACGGAGGATACGTAAAAGGACTGCCAATATATT
TGACACTGACGGCAACTTGAGGATTGTCTTTAGGTGGGGTAAATCCAAGG
GTGTCCATGTAACGAAAGAAGAGAttcttcttttcaattaaattcATTAA
CACACGTAACGAACGGAGATCCAAATGTTTGTCAAGATTAGCATCAGCGC
TAGGTAACGCTAGAGTACGGCATTTGCGTAAAGCAGAGCTGGAGATGTCT
TTGCAATATAACATCTTGTGGCGCATATTCTCCACTAAGTTAAACCACTT
ATCTTCGGGTGGGTGAGTCGTAGTAAAGTCGATTAAACGAGGAGCAGCCG
AAAGTAAAGATTCTGATACCTCCGAAAACAAGTTGTCATTTTCTGGAAAT
AGGTTAATCACGTCTGGTTTGTTCACCAATTGCTTGTCGATGTCATCTAA
CTTGGCATCAGGAATAGGAGAATCAGGTTTCAGCGGTTCTGGTTCATCGT
CGCTGCTATCACTGAAGTCAAGTCTTCGACGTTTAGGAACACTACCTTGT
AATGCACCAGCACTGACAGAGCGAACGGCGGTAAATAGAACAATAGCAGC
TTGTTGTTCTTCGGATTCAAACTGCGCTGTATGTTCTTCGTCAGCAATAA
AATTCTTCTGCGATGGATTCATTAACTCCAATTCAATTCTAATTTTCTTC
CCTGGTATATCACAAACACCAATAAACTTTGACTGGTTATCATACAAATC
ACAAGTACCCGAATTGTCAAATAATCCCATAAGAATGGTACGTGTACTAT
AATCCGGAAACAATCTTGCAATTAATAATTCAACCATTTGTTGAATATCG
TCACGGTTATAGTCCCAACCGTTCTGTTTAGCTATATCATACATAGCCTC
GAACTCCTCAGCGTGTAAATCAGTAGTACAAACGGTGTGCTTgtaaaatt
ctgccattttaaCTGCTTGTAGTTAAAATGATAACTGattatgatttaaa
aaattcCCTCTATTTATAATAAAAAAGCGCAGGAAAATCCAGCCAACCAC
ATCACGATCTTCTTTATTGAACATTCGCTAGTCTGTCGGCCCGATACGGT
ACAGTCGACACTTACATGACAG Run BLAST on NCBI protein sequence of TCONS_00021948-protein >TCONS_00021948-protein ID=TCONS_00021948-protein|Name=TCONS_00021948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MAEFYKHTVCTTDLHAEEFEAMYDIAKQNGWDYNRDDIQQMVELLIARLF
PDYSTRTILMGLFDNSGTCDLYDNQSKFIGVCDIPGKKIRIELELMNPSQ
KNFIADEEHTAQFESEEQQAAIVLFTAVRSVSAGALQGSVPKRRRLDFSD
SSDDEPEPLKPDSPIPDAKLDDIDKQLVNKPDVINLFPENDNLFSEVSES
LLSAAPRLIDFTTTHPPEDKWFNLVENMRHKMLYCKDISSSALRKCRTLA
LPSADANLDKHLDLRSLRVLMNLIEKKNLFFRYMDTLGFTPPKDNPQVAV
SVKYIGSPFTYPPFVKHKKIISGDHHSFSDDKRTT Run BLAST on NCBI transcript from alignment at sc0000400:5580..6751 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021948 ID=TCONS_00021948|Name=TCONS_00021948|organism=Clytia hemisphaerica|type=transcript|length=1172bp|location=Sequence derived from alignment at sc0000400:5580..6751 (Clytia hemisphaerica)
CTGTCATGTAAGTGTCGACTGTACCGTATCGGGCCGACAGACTAGCGAAT
GTTCAATAAAGAAGATCGTGATGTGGTTGGCTGGATTTTCCTGCGCTTTT
TTATTATAAATAGAGGgaattttttaaatcataatCAGTTATCATTTTAA
CTACAAGCAGttaaaatggcagaattttacAAGCACACCGTTTGTACTAC
TGATTTACACGCTGAGGAGTTCGAGGCTATGTATGATATAGCTAAACAGA
ACGGTTGGGACTATAACCGTGACGATATTCAACAAATGGTTGAATTATTA
ATTGCAAGATTGTTTCCGGATTATAGTACACGTACCATTCTTATGGGATT
ATTTGACAATTCGGGTACTTGTGATTTGTATGATAACCAGTCAAAGTTTA
TTGGTGTTTGTGATATACCAGGGAAGAAAATTAGAATTGAATTGGAGTTA
ATGAATCCATCGCAGAAGAATTTTATTGCTGACGAAGAACATACAGCGCA
GTTTGAATCCGAAGAACAACAAGCTGCTATTGTTCTATTTACCGCCGTTC
GCTCTGTCAGTGCTGGTGCATTACAAGGTAGTGTTCCTAAACGTCGAAGA
CTTGACTTCAGTGATAGCAGCGACGATGAACCAGAACCGCTGAAACCTGA
TTCTCCTATTCCTGATGCCAAGTTAGATGACATCGACAAGCAATTGGTGA
ACAAACCAGACGTGATTAACCTATTTCCAGAAAATGACAACTTGTTTTCG
GAGGTATCAGAATCTTTACTTTCGGCTGCTCCTCGTTTAATCGACTTTAC
TACGACTCACCCACCCGAAGATAAGTGGTTTAACTTAGTGGAGAATATGC
GCCACAAGATGTTATATTGCAAAGACATCTCCAGCTCTGCTTTACGCAAA
TGCCGTACTCTAGCGTTACCTAGCGCTGATGCTAATCTTGACAAACATTT
GGATCTCCGTTCGTTACGTGTGTTAATgaatttaattgaaaagaagaaTC
TCTTCTTTCGTTACATGGACACCCTTGGATTTACCCCACCTAAAGACAAT
CCTCAAGTTGCCGTCAGTGTCAAATATATTGGCAGTCCTTTTACGTATCC
TCCGTTTGTGAAACACAAGAAGATTATAAGTGGAGACCATCATTCTTTTT
CAGATGATAAGCGAACAACGAG Coding sequence (CDS) from alignment at sc0000400:5580..6751 >TCONS_00021948 ID=TCONS_00021948|Name=TCONS_00021948|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000400:5580..6751 (Clytia hemisphaerica)
atggcagaattttacAAGCACACCGTTTGTACTACTGATTTACACGCTGA
GGAGTTCGAGGCTATGTATGATATAGCTAAACAGAACGGTTGGGACTATA
ACCGTGACGATATTCAACAAATGGTTGAATTATTAATTGCAAGATTGTTT
CCGGATTATAGTACACGTACCATTCTTATGGGATTATTTGACAATTCGGG
TACTTGTGATTTGTATGATAACCAGTCAAAGTTTATTGGTGTTTGTGATA
TACCAGGGAAGAAAATTAGAATTGAATTGGAGTTAATGAATCCATCGCAG
AAGAATTTTATTGCTGACGAAGAACATACAGCGCAGTTTGAATCCGAAGA
ACAACAAGCTGCTATTGTTCTATTTACCGCCGTTCGCTCTGTCAGTGCTG
GTGCATTACAAGGTAGTGTTCCTAAACGTCGAAGACTTGACTTCAGTGAT
AGCAGCGACGATGAACCAGAACCGCTGAAACCTGATTCTCCTATTCCTGA
TGCCAAGTTAGATGACATCGACAAGCAATTGGTGAACAAACCAGACGTGA
TTAACCTATTTCCAGAAAATGACAACTTGTTTTCGGAGGTATCAGAATCT
TTACTTTCGGCTGCTCCTCGTTTAATCGACTTTACTACGACTCACCCACC
CGAAGATAAGTGGTTTAACTTAGTGGAGAATATGCGCCACAAGATGTTAT
ATTGCAAAGACATCTCCAGCTCTGCTTTACGCAAATGCCGTACTCTAGCG
TTACCTAGCGCTGATGCTAATCTTGACAAACATTTGGATCTCCGTTCGTT
ACGTGTGTTAATgaatttaattgaaaagaagaaTCTCTTCTTTCGTTACA
TGGACACCCTTGGATTTACCCCACCTAAAGACAATCCTCAAGTTGCCGTC
AGTGTCAAATATATTGGCAGTCCTTTTACGTATCCTCCGTTTGTGAAACA
CAAGAAGATTATAAGTGGAGACCATCATTCTTTTTCAGATGATAAGCGAA
CAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021948-exon-sc0000400-1491911889:5580..6751 | TCONS_00021948-exon-sc0000400-1491911889:5580..6751 | Clytia hemisphaerica | exon |
| TCONS_00021948-exon-sc0000400-1510915933:5580..6751 | TCONS_00021948-exon-sc0000400-1510915933:5580..6751 | Clytia hemisphaerica | exon |
| TCONS_00021948-exon-sc0000400-1575043694:5580..6751 | TCONS_00021948-exon-sc0000400-1575043694:5580..6751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:5580..6751 . |
Blast
The following BLAST results are available for this feature:
|
