TCONS_00021945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021945
Unique NameTCONS_00021945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021945 ID=TCONS_00021945|Name=TCONS_00021945|organism=Clytia hemisphaerica|type=transcript|length=541bp
CAAAAATCTGGCAAACCAAACCCTAAATGTTCGTGGACGGAAGCTGCCCT
TGAGTATGTGAATATGATGGCTGTACACCATCGAAACTTGGAACGTGCCA
TCATCAACCAAggTACATACAAACTTGCTCCAGGTTTTGAACACTACCTT
ATTGACAATGAAACTTGGGATCTCATGACTAATGAAGAGAAAGACGCCAA
AAAAGCACAATTCTGTGGAAAATTTCCGTTCCTTTACAAGTGTCGTGATG
ACCGTGGAATAGAAGTAATTCAAGACAGATCTACCCCCATTCCACATGTT
CCTGCCACCCCCAGAAACAGCAGTGCAGAAATTCCAGACAGATCTACCTT
GATTGGAGAAGTTCCTGCTACCCCCAGAAACATCAATATGGAAGATGATT
GCCAACCATCAACATCAGGGTTACAAGTGATAGATGAATATCCAACTGAT
GAAGAGGATACCTCTATCTCACATCAACCTCTGTCAGTCAGTTCAAATAT
GGGTATTTCGCCACCTGAATTTCCTGACTTCTCGGTGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00021945-protein

>TCONS_00021945-protein ID=TCONS_00021945-protein|Name=TCONS_00021945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
QKSGKPNPKCSWTEAALEYVNMMAVHHRNLERAIINQGTYKLAPGFEHYL
IDNETWDLMTNEEKDAKKAQFCGKFPFLYKCRDDRGIEVIQDRSTPIPHV
PATPRNSSAEIPDRSTLIGEVPATPRNINMEDDCQPSTSGLQVIDEYPTD
EEDTSISHQPLSVSSNMGISPPEFPDFSVS
Run BLAST on NCBI

transcript from alignment at sc0000400:215389..217791-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021945 ID=TCONS_00021945|Name=TCONS_00021945|organism=Clytia hemisphaerica|type=transcript|length=2403bp|location=Sequence derived from alignment at sc0000400:215389..217791- (Clytia hemisphaerica)
CAAAAATCTGGCAAACCAAACCCTAAATGTTCGTGGACGGAAGCTGCCCT
TGAGTATGTGAATATGATGGCTGTACACCATCGAAACTTGGAACGTGCCA
TCATCAACCAAGGTATTTTTTCTTTGAAATTCAAATAATATGTTACTAAT
TTACAGCATACCCCTTTTTTTTAAAACTATTAAACCCCCTCCTGCTTATT
CCAATCTTCTTTCAGAAACTGTAAATCGAAATTGAATTTAGGAGAGGTCT
CTGTACACGCTTTTTTTATAANCTTTTTGAAAACTATTAAACCCCCTCCC
GCTTATTCCAATCTTCTTTCAGAAACTGTAAATCAAAATTTGAATTTAGG
AGAGGTCTCTGTACACGCTTTTTTTATAAGAATATCAGAATGAAAATTGG
CCAAATCGTTAGAATACCCTAAGAATACCTCGAGGGTGAGTTTCACAGAT
TTTGATAAGAATAGTCATTTTCGATTTGGTAAAAAGTATACTCTCCTGTG
CTTAATTGTAGGGGAGGTCATTTTCCATATTTTGGGAAAAAATTGCTAAA
TTTTGACCAATTTTTGACCAAAAAAGTCTATTTCAAAGAAATATTTGAAG
TATTATTGAAAACTCAACGGCTTTGAAACATTTTTAAGCCATTGATTACC
CCTCCTACTACCCTAGAAAAAATATTTTGTTTGACCCCATTTAATTAGAC
CCCCCTACAATTAAGCACAGAAGAGTAAAATTGGGTTTTTTGTTGGACTT
AAATTGAAACTTAAAGGCAGAAATATAATTTCAGCTTCAAATATGCGCTA
AATAACATGAAACTCTCAAAAAGGTCACTTATGTTTCTACAAAGGTAAAG
TCTGAAAAAGTAAGAATGTTTTTTCTTTTATAAGCATAACGTTCATGAGC
ATATGCAGGCTCAGCTATTTGGTACCTAAACAATGGCTTTATTGTTTGAG
AACAATAGAATGCTAAGCATAATGCGAGCCTGATATAGGGGCAGACATAT
GCTTATAAAAAGAAAAACGTGTAATTCACCCTTAATTTTGGCAATTTCTT
AAGAATACTTGACCCTCGACCAAAGTACACTATTCTTATGAAAAAAGTGT
GTAGCCAGGTGTAGCTACAATTGTCAAAATCAGTTGCCAACAAGTAGAAA
GGGAAACTCTACTACCTCTCTCTCCCTCTCTGACATCCTTTCTGTTTTTC
TTTTTGTTCAGGTACATACAAACTTGCTCCAGGTTTTGAACACTACCTTA
TTGACAATGAAACTTGGGATCTCATGACTAATGAAGAGAAAGACGCCAAA
AAAGCACAATTCTGTGGAAAATTTCCGTTCCTTTACAAGTGTCGTGATGA
CCGTGGAATAGAAGGTGAGCTTTTAGATTTATTTCTGTTTACTCTATTTG
ATATACTTGTGCAGATAAACCATTGAGTTATAAGCCTGAAGGTCCAAATT
AGTAATCAAGTCAAATTTTAAGATCCCAGAAATATTCTGAATCTAAACAG
TTCATATATTTTCACTTCAAATGAATATGAATATGAATTTATGCTCTACT
TGATATTGAGCACTGTTTTCTTCGCTGTTCCTGTTATTGAATCTGAATAA
TGACACTTACTTTTCAGTAATTCAAGACAGATCTACCCCCATTCCACATG
TTCCTGCCACCCCCAGAAACAGCAGTGCAGGTAAATATTAGATGATAACA
TCTAAATATATTTTTATAAACATAAAACTTAAAATTGTAAACATTTTGGC
CCAAAAGGTTAACATTTTTTTTAAATCCTGAGAATCCCAAAAATATTTCG
AAACAACTATAACGACACTTACTTTTCAGAAATTCCAGACAGATCTACCT
TGATTGGAGAAGTTCCTGCTACCCCCAGAAACATCAATATGGGTAAATAT
GAGATGATGATGGTTTTTAACTGTTTTTAAAGCATATAAAACAAAAGCAC
TAACAAATGTTAGAAAAACTTGAGCATTCATATTAGATTTCCAAGCATTG
TTTCTCATTTTTCATATTTGCAAATCAATCAAACTTAAATATAAGCAGTT
TTTGTTAATCATAACGATGCTTAGAAATTATCTGGATGTTAAAAAAACAT
TGGAAGACAAGCGTAAAACATACCTACTAAAAATCTGGTTAAGATAAGTA
TATTGTGTCGTATACCTTCACCAGGATTCTCCTGACTTTGGAACCCTTTT
GATTACTATTCATAATTTTTGAATTACTACATCCATATTTTTTTGAATTG
CAGAAGATGATTGCCAACCATCAACATCAGGGTTACAAGTGATAGATGAA
TATCCAACTGATGAAGAGGATACCTCTATCTCACATCAACCTCTGTCAGT
CAGTTCAAATATGGGTATTTCGCCACCTGAATTTCCTGACTTCTCGGTGT
CTG

Coding sequence (CDS) from alignment at sc0000400:215389..217791-

>TCONS_00021945 ID=TCONS_00021945|Name=TCONS_00021945|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000400:215389..217791- (Clytia hemisphaerica)
AAGATGATTGCCAACCATCAACATCAGGGTTACAAGTGATAGATGAATAT
CCAACTGATGAAGAGGATACCTCTATCTCACATCAACCTCTGTCAGTCAG
TTCAAATATGGGTATTTCGCCACCTGAATTTCCTGACTTCTCGGTGTCTA
AATTCCAGACAGATCTACCTTGATTGGAGAAGTTCCTGCTACCCCCAGAA
ACATCAATATGGTAATTCAAGACAGATCTACCCCCATTCCACATGTTCCT
GCCACCCCCAGAAACAGCAGTGCAGGTACATACAAACTTGCTCCAGGTTT
TGAACACTACCTTATTGACAATGAAACTTGGGATCTCATGACTAATGAAG
AGAAAGACGCCAAAAAAGCACAATTCTGTGGAAAATTTCCGTTCCTTTAC
AAGTGTCGTGATGACCGTGGAATAGAAGCAAAAATCTGGCAAACCAAACC
CTAAATGTTCGTGGACGGAAGCTGCCCTTGAGTATGTGAATATGATGGCT
GTACACCATCGAAACTTGGAACGTGCCATCATCAACCAAGAAGATGATTG
CCAACCATCAACATCAGGGTTACAAGTGATAGATGAATATCCAACTGATG
AAGAGGATACCTCTATCTCACATCAACCTCTGTCAGTCAGTTCAAATATG
GGTATTTCGCCACCTGAATTTCCTGACTTCTCGGTGTCTAAATTCCAGAC
AGATCTACCTTGATTGGAGAAGTTCCTGCTACCCCCAGAAACATCAATAT
GGTAATTCAAGACAGATCTACCCCCATTCCACATGTTCCTGCCACCCCCA
GAAACAGCAGTGCAGGTACATACAAACTTGCTCCAGGTTTTGAACACTAC
CTTATTGACAATGAAACTTGGGATCTCATGACTAATGAAGAGAAAGACGC
CAAAAAAGCACAATTCTGTGGAAAATTTCCGTTCCTTTACAAGTGTCGTG
ATGACCGTGGAATAGAAGCAAAAATCTGGCAAACCAAACCCTAAATGTTC
GTGGACGGAAGCTGCCCTTGAGTATGTGAATATGATGGCTGTACACCATC
GAAACTTGGAACGTGCCATCATCAACCAAGAAGATGATTGCCAACCATCA
ACATCAGGGTTACAAGTGATAGATGAATATCCAACTGATGAAGAGGATAC
CTCTATCTCACATCAACCTCTGTCAGTCAGTTCAAATATGGGTATTTCGC
CACCTGAATTTCCTGACTTCTCGGTGTCTAAATTCCAGACAGATCTACCT
TGATTGGAGAAGTTCCTGCTACCCCCAGAAACATCAATATGGTAATTCAA
GACAGATCTACCCCCATTCCACATGTTCCTGCCACCCCCAGAAACAGCAG
TGCAGGTACATACAAACTTGCTCCAGGTTTTGAACACTACCTTATTGACA
ATGAAACTTGGGATCTCATGACTAATGAAGAGAAAGACGCCAAAAAAGCA
CAATTCTGTGGAAAATTTCCGTTCCTTTACAAGTGTCGTGATGACCGTGG
AATAGAAGCAAAAATCTGGCAAACCAAACCCTAAATGTTCGTGGACGGAA
GCTGCCCTTGAGTATGTGAATATGATGGCTGTACACCATCGAAACTTGGA
ACGTGCCATCATCAACCAAGAAGATGATTGCCAACCATCAACATCAGGGT
TACAAGTGATAGATGAATATCCAACTGATGAAGAGGATACCTCTATCTCA
CATCAACCTCTGTCAGTCAGTTCAAATATGGGTATTTCGCCACCTGAATT
TCCTGACTTCTCGGTGTCTAAATTCCAGACAGATCTACCTTGATTGGAGA
AGTTCCTGCTACCCCCAGAAACATCAATATGGTAATTCAAGACAGATCTA
CCCCCATTCCACATGTTCCTGCCACCCCCAGAAACAGCAGTGCAGGTACA
TACAAACTTGCTCCAGGTTTTGAACACTACCTTATTGACAATGAAACTTG
GGATCTCATGACTAATGAAGAGAAAGACGCCAAAAAAGCACAATTCTGTG
GAAAATTTCCGTTCCTTTACAAGTGTCGTGATGACCGTGGAATAGAAGCA
AAAATCTGGCAAACCAAACCCTAAATGTTCGTGGACGGAAGCTGCCCTTG
AGTATGTGAATATGATGGCTGTACACCATCGAAACTTGGAACGTGCCATC
ATCAACCAAGAAGATGATTGCCAACCATCAACATCAGGGTTACAAGTGAT
AGATGAATATCCAACTGATGAAGAGGATACCTCTATCTCACATCAACCTC
TGTCAGTCAGTTCAAATATGGGTATTTCGCCACCTGAATTTCCTGACTTC
TCGGTGTCTAAATTCCAGACAGATCTACCTTGATTGGAGAAGTTCCTGCT
ACCCCCAGAAACATCAATATGGTAATTCAAGACAGATCTACCCCCATTCC
ACATGTTCCTGCCACCCCCAGAAACAGCAGTGCAGGTACATACAAACTTG
CTCCAGGTTTTGAACACTACCTTATTGACAATGAAACTTGGGATCTCATG
ACTAATGAAGAGAAAGACGCCAAAAAAGCACAATTCTGTGGAAAATTTCC
GTTCCTTTACAAGTGTCGTGATGACCGTGGAATAGAAGCAAAAATCTGGC
AAACCAAACCCTAAATGTTCGTGGACGGAAGCTGCCCTTGAGTATGTGAA
TATGATGGCTGTACACCATCGAAACTTGGAACGTGCCATCATCAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012311XLOC_012311Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021945-proteinTCONS_00021945-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021945-exon-sc0000400-1575043694:217680..217791TCONS_00021945-exon-sc0000400-1575043694:217680..217791Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1575043694:216428..216580TCONS_00021945-exon-sc0000400-1575043694:216428..216580Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1575043694:216112..216174TCONS_00021945-exon-sc0000400-1575043694:216112..216174Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1575043694:215900..215962TCONS_00021945-exon-sc0000400-1575043694:215900..215962Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1575043694:215389..215538TCONS_00021945-exon-sc0000400-1575043694:215389..215538Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1510915933:217680..217791TCONS_00021945-exon-sc0000400-1510915933:217680..217791Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1510915933:216428..216580TCONS_00021945-exon-sc0000400-1510915933:216428..216580Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1510915933:216112..216174TCONS_00021945-exon-sc0000400-1510915933:216112..216174Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1510915933:215900..215962TCONS_00021945-exon-sc0000400-1510915933:215900..215962Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1510915933:215389..215538TCONS_00021945-exon-sc0000400-1510915933:215389..215538Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1491911889:217680..217791TCONS_00021945-exon-sc0000400-1491911889:217680..217791Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1491911889:216428..216580TCONS_00021945-exon-sc0000400-1491911889:216428..216580Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1491911889:216112..216174TCONS_00021945-exon-sc0000400-1491911889:216112..216174Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1491911889:215900..215962TCONS_00021945-exon-sc0000400-1491911889:215900..215962Clytia hemisphaericaexon
TCONS_00021945-exon-sc0000400-1491911889:215389..215538TCONS_00021945-exon-sc0000400-1491911889:215389..215538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000400supercontigsc0000400:215389..217791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0900494	0	0	0	0.142139	0	0.060679	0.0651179	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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