TCONS_00021860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021860
Unique NameTCONS_00021860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021860 ID=TCONS_00021860|Name=TCONS_00021860|organism=Clytia hemisphaerica|type=transcript|length=821bp
ATTAACAAAGAATTAACAGACATTAATTGGTCTCAAGAACTGGACACAAA
TCTATATGACCCAAATCGTCAATATGCCAACTTCCTTGAAAAATGTCTTC
TGGTTGTGAAAAAGCATTTGCCAAAGAGAAAACCTccaaaaggattttca
aagattccaaGAGATCGTCGTATTCTTATGAGAAAACGTGAAAGACTctc
caaaaagaatttcaaaaccaataaaacaaatcagAAACTAATTGACATTG
AACTGATGCTACAGCAATCCCACAAAAATGANAAAACGTAAAAGACTctc
caaaaagaatttcaaaaccaataaaacaaatcagAAACTAATTGACATTG
AACTGATGCTACAGCAATCCCACGAAAATAAACGCGATAAAGCAGAGCTG
GATGCCTCACTGAAAATAAAAAGCAATCCTAAATACTTCTACTCCTATGC
AAAGAGATTCACAAAAACTAAACCTAAAGTTGGCCCACTGAAAAATCCAA
CCATCAACAAATTAACATCTGACTCGCAAGAGATGgcaaacatcttacaa
aagcaATACTGTTCAGTATTTACCACTCCCAAAACAGACTACAGTTTTCT
GAATTCAAATGAGACAAAAGACTCCTCAACCCTTGAGCACATTACTTTCA
CAGAGGTGATTTCATCCAACAAATTGACACTATTCCAGCCAACTCGTCAG
CCGGACCAGATGACTTGCcagcaaagtttttcaaaatgtgcaAGAAATCA
CTTTCTAAGCCACTTAAGATGATATGGCAAAACAACTTTGACAAAGGAAT
CACACCTGAAATTCTCAAANN
Run BLAST on NCBI

protein sequence of TCONS_00021860-protein

>TCONS_00021860-protein ID=TCONS_00021860-protein|Name=TCONS_00021860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MXKRKRLSKKNFKTNKTNQKLIDIELMLQQSHENKRDKAELDASLKIKSN
PKYFYSYAKRFTKTKPKVGPLKNPTINKLTSDSQEMANILQKQYCSVFTT
PKTDYSFLNSNETKDSSTLEHITFTEVISSNKLTLFQPTRQPDQMTCQQS
FSKCARNHFLSHLR
Run BLAST on NCBI

transcript from alignment at sc0000395:284753..285573

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021860 ID=TCONS_00021860|Name=TCONS_00021860|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0000395:284753..285573 (Clytia hemisphaerica)
NNTTTGAGAATTTCAGGTGTGATTCCTTTGTCAAAGTTGTTTTGCCATAT
CATCTTAAGTGGCTTAGAAAGTGATTTCTtgcacattttgaaaaactttg
ctgGCAAGTCATCTGGTCCGGCTGACGAGTTGGCTGGAATAGTGTCAATT
TGTTGGATGAAATCACCTCTGTGAAAGTAATGTGCTCAAGGGTTGAGGAG
TCTTTTGTCTCATTTGAATTCAGAAAACTGTAGTCTGTTTTGGGAGTGGT
AAATACTGAACAGTATtgcttttgtaagatgtttgcCATCTCTTGCGAGT
CAGATGTTAATTTGTTGATGGTTGGATTTTTCAGTGGGCCAACTTTAGGT
TTAGTTTTTGTGAATCTCTTTGCATAGGAGTAGAAGTATTTAGGATTGCT
TTTTATTTTCAGTGAGGCATCCAGCTCTGCTTTATCGCGTTTATTTTCGT
GGGATTGCTGTAGCATCAGTTCAATGTCAATTAGTTTctgatttgtttta
ttggttttgaaattctttttggagAGTCTTTTACGTTTTNTCATTTTTGT
GGGATTGCTGTAGCATCAGTTCAATGTCAATTAGTTTctgatttgtttta
ttggttttgaaattctttttggagAGTCTTTCACGTTTTCTCATAAGAAT
ACGACGATCTCttggaatctttgaaaatccttttggAGGTTTTCTCTTTG
GCAAATGCTTTTTCACAACCAGAAGACATTTTTCAAGGAAGTTGGCATAT
TGACGATTTGGGTCATATAGATTTGTGTCCAGTTCTTGAGACCAATTAAT
GTCTGTTAATTCTTTGTTAAT

Coding sequence (CDS) from alignment at sc0000395:284753..285573

>TCONS_00021860 ID=TCONS_00021860|Name=TCONS_00021860|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000395:284753..285573 (Clytia hemisphaerica)
TCATCTTAAGTGGCTTAGAAAGTGATTTCTtgcacattttgaaaaacttt
gctgGCAAGTCATCTGGTCCGGCTGACGAGTTGGCTGGAATAGTGTCAAT
TTGTTGGATGAAATCACCTCTGTGAAAGTAATGTGCTCAAGGGTTGAGGA
GTCTTTTGTCTCATTTGAATTCAGAAAACTGTAGTCTGTTTTGGGAGTGG
TAAATACTGAACAGTATtgcttttgtaagatgtttgcCATCTCTTGCGAG
TCAGATGTTAATTTGTTGATGGTTGGATTTTTCAGTGGGCCAACTTTAGG
TTTAGTTTTTGTGAATCTCTTTGCATAGGAGTAGAAGTATTTAGGATTGC
TTTTTATTTTCAGTGAGGCATCCAGCTCTGCTTTATCGCGTTTATTTTCG
TGGGATTGCTGTAGCATCAGTTCAATGTCAATTAGTTTctgatttgtttt
attggttttgaaattctttttggagAGTCTTTTACGTTTTNTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012267XLOC_012267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021860-proteinTCONS_00021860-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021860-exon-sc0000395-1491911889:284753..285573TCONS_00021860-exon-sc0000395-1491911889:284753..285573Clytia hemisphaericaexon
TCONS_00021860-exon-sc0000395-1510915933:284753..285573TCONS_00021860-exon-sc0000395-1510915933:284753..285573Clytia hemisphaericaexon
TCONS_00021860-exon-sc0000395-1575043694:284753..285573TCONS_00021860-exon-sc0000395-1575043694:284753..285573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:284753..285573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1325	1.73025	3.49043	2.49865	1.90725	2.03885	2.29264	3.84731	1.69322	1.28926	2.2258	2.35536	1.94866	2.28768	1.05849	1.89449	1.16133	1.2842	2.20129	3.10988	1.93077	2.41943	0.584363	0.455533	2.27559	1.9842	1.85115	3.22983	2.25273	3.35717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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