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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021859 ID=TCONS_00021859|Name=TCONS_00021859|organism=Clytia hemisphaerica|type=transcript|length=1696bp
GCGACCCTTTGAGTCTCAAGTGGTCTTCATTCCCGGTATACCTGGTATAA
AGAATGAATAAAATAGGAACCAAATTTGGTttaaaatggttaaaataaac
ctAACAGAAATAAGAAAATCAAAGTGTCTACTACTTTTCAACAAGTGTTA
ATTCCGACCAGAAATTGcaatttaaggaaatattttgatttaattctACG
ACTTTTCAACAAGAGTTAATTCTTGTCCATTTTTTTCTCGAACTTGTTTG
GACTCTTGAATCCGTCTTTTGACAATCCATAAAACAAGGGTGAGGGAGAG
TGTAGCAGCGACCACTGAGCAACCATAAAACAACACTTTAGCACCAAACT
TTTCATAGATATATCCACCTAGGGTGTTGCCCACACATTCGGGAAGTGAA
TATTGAACAGCATTGATGATTCCATACATACTTGTAAGAACACGCTTCGG
AGATTTCTTTAAAACAAACTCCAAACCCACCGTCTCTGTAAttggaaaat
cgaaaatcgagaGAATCTGAACAATGCTGATTATTTTCGGGTCATTGAAA
GCAGCCACCAGGCTGAACCGCAACACTAACACGATCAGCAATATAAATAT
GGTGGGGAATGGACCTTTCACGAGACGCACCAGCTTCGGGATGATCAGAA
AACCAATGAAGTTTCCAACAGTAAGAATAATGAGGTATAAGTTCAAGTCC
ATGGTAGTTGCGTTCAGATCTTTAAGGTATGGAAAACTGTAATAAAGAAA
TTCGGACATTAAACAACCGATACCAAATAACGTCAATACCATGACTAACA
TCTCATCCTCAAAAAGTGTCCGAAATAAAACTGTCCGGAACGGTTGTTGT
TCAAGcttttctttttctcctttctGCTCAAGTGGTGCTTCTTCTTCGCT
ATCCATCAAATCGTGAACCTCCATCTTCAGTCCTTGAAACAACCAAAGCA
AGGTTAGCATATAACAAATGGAAAGAAATCCGTATAAAATGAACACACCG
GTATAACAAGTCACGTGATCACTCGGGAATAATGCGATCGAATAATTCCC
GATGATTGGACAAACCAATTGACCGAGAACACCAAAGATCCGTTGATGTC
CATACTTATTTTTCTCGCCATTTTCGTTGGATTGTTTGATACGTAACATG
ACTCCAGTATCTATAAAAGCATCTAAGGAGCCATCGAATAGCGATTGGAT
CAAATTGACAGCAAACATCATCCAGAACAAAACTTGTTGGTCAGGAGGAC
TAGTACTAGTGTGAGATTCTGTACTGAATGACGAGGTCGTGTTCAGGTGT
GATGTTGTCGAGTTTCGGTTCTCTTCACTTCCAGCTGAGCAATACAGAAA
TGTTTTGGAACCGAACTTCAACGCAAGGAAAGGCTGCATGGcgttgaaaa
tgaaagtgataaTGGAACAAAGCACAATCGTCAGACGATGAACCCGATAT
TTATCCGATATCATTCCGATGAACGGAGAAAACCCAACAACGCTGACCAA
CCGTAAGCCAACAATTAATCCAGCTTGACTTTTCGATAAACCGATACTCA
ACAGAAATAATACTAAGTTCATGCGAATTGTTAAATCTTTTGCAATGAAC
AAGAAATATGCAATTTTACAAGGAATCATGCTTTTACTGATATTATACCA
CGCCATTTTTCTTTCGATTTTCCTCTGAAAAAAAACCCAAGTACAG Run BLAST on NCBI protein sequence of TCONS_00021859-protein >TCONS_00021859-protein ID=TCONS_00021859-protein|Name=TCONS_00021859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
CTWVFFQRKIERKMAWYNISKSMIPCKIAYFLFIAKDLTIRMNLVLFLLS
IGLSKSQAGLIVGLRLVSVVGFSPFIGMISDKYRVHRLTIVLCSIITFIF
NAMQPFLALKFGSKTFLYCSAGSEENRNSTTSHLNTTSSFSTESHTSTSP
PDQQVLFWMMFAVNLIQSLFDGSLDAFIDTGVMLRIKQSNENGEKNKYGH
QRIFGVLGQLVCPIIGNYSIALFPSDHVTCYTGVFILYGFLSICYMLTLL
WLFQGLKMEVHDLMDSEEEAPLEQKGEKEKLEQQPFRTVLFRTLFEDEML
VMVLTLFGIGCLMSEFLYYSFPYLKDLNATTMDLNLYLIILTVGNFIGFL
IIPKLVRLVKGPFPTIFILLIVLVLRFSLVAAFNDPKIISIVQILSIFDF
PITETVGLEFVLKKSPKRVLTSMYGIINAVQYSLPECVGNTLGGYIYEKF
GAKVLFYGCSVVAATLSLTLVLWIVKRRIQESKQVREKNGQELTLVEKS Run BLAST on NCBI transcript from alignment at sc0000395:226054..227749 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021859 ID=TCONS_00021859|Name=TCONS_00021859|organism=Clytia hemisphaerica|type=transcript|length=1696bp|location=Sequence derived from alignment at sc0000395:226054..227749 (Clytia hemisphaerica)
CTGTACTTGGGTTTTTTTTCAGAGGAAAATCGAAAGAAAAATGGCGTGGT
ATAATATCAGTAAAAGCATGATTCCTTGTAAAATTGCATATTTCTTGTTC
ATTGCAAAAGATTTAACAATTCGCATGAACTTAGTATTATTTCTGTTGAG
TATCGGTTTATCGAAAAGTCAAGCTGGATTAATTGTTGGCTTACGGTTGG
TCAGCGTTGTTGGGTTTTCTCCGTTCATCGGAATGATATCGGATAAATAT
CGGGTTCATCGTCTGACGATTGTGCTTTGTTCCAttatcactttcatttt
caacgCCATGCAGCCTTTCCTTGCGTTGAAGTTCGGTTCCAAAACATTTC
TGTATTGCTCAGCTGGAAGTGAAGAGAACCGAAACTCGACAACATCACAC
CTGAACACGACCTCGTCATTCAGTACAGAATCTCACACTAGTACTAGTCC
TCCTGACCAACAAGTTTTGTTCTGGATGATGTTTGCTGTCAATTTGATCC
AATCGCTATTCGATGGCTCCTTAGATGCTTTTATAGATACTGGAGTCATG
TTACGTATCAAACAATCCAACGAAAATGGCGAGAAAAATAAGTATGGACA
TCAACGGATCTTTGGTGTTCTCGGTCAATTGGTTTGTCCAATCATCGGGA
ATTATTCGATCGCATTATTCCCGAGTGATCACGTGACTTGTTATACCGGT
GTGTTCATTTTATACGGATTTCTTTCCATTTGTTATATGCTAACCTTGCT
TTGGTTGTTTCAAGGACTGAAGATGGAGGTTCACGATTTGATGGATAGCG
AAGAAGAAGCACCACTTGAGCagaaaggagaaaaagaaaagCTTGAACAA
CAACCGTTCCGGACAGTTTTATTTCGGACACTTTTTGAGGATGAGATGTT
AGTCATGGTATTGACGTTATTTGGTATCGGTTGTTTAATGTCCGAATTTC
TTTATTACAGTTTTCCATACCTTAAAGATCTGAACGCAACTACCATGGAC
TTGAACTTATACCTCATTATTCTTACTGTTGGAAACTTCATTGGTTTTCT
GATCATCCCGAAGCTGGTGCGTCTCGTGAAAGGTCCATTCCCCACCATAT
TTATATTGCTGATCGTGTTAGTGTTGCGGTTCAGCCTGGTGGCTGCTTTC
AATGACCCGAAAATAATCAGCATTGTTCAGATTCtctcgattttcgattt
tccaaTTACAGAGACGGTGGGTTTGGAGTTTGTTTTAAAGAAATCTCCGA
AGCGTGTTCTTACAAGTATGTATGGAATCATCAATGCTGTTCAATATTCA
CTTCCCGAATGTGTGGGCAACACCCTAGGTGGATATATCTATGAAAAGTT
TGGTGCTAAAGTGTTGTTTTATGGTTGCTCAGTGGTCGCTGCTACACTCT
CCCTCACCCTTGTTTTATGGATTGTCAAAAGACGGATTCAAGAGTCCAAA
CAAGTTCGAGAAAAAAATGGACAAGAATTAACTCTTGTTGAAAAGTCGTa
gaattaaatcaaaatatttccttaaattgCAATTTCTGGTCGGAATTAAC
ACTTGTTGAAAAGTAGTAGACACTTTGATTTTCTTATTTCTGTTaggttt
attttaaccattttaaACCAAATTTGGTTCCTATTTTATTCATTCTTTAT
ACCAGGTATACCGGGAATGAAGACCACTTGAGACTCAAAGGGTCGC Coding sequence (CDS) from alignment at sc0000395:226054..227749 >TCONS_00021859 ID=TCONS_00021859|Name=TCONS_00021859|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000395:226054..227749 (Clytia hemisphaerica)
TGTACTTGGGTTTTTTTTCAGAGGAAAATCGAAAGAAAAATGGCGTGGTA
TAATATCAGTAAAAGCATGATTCCTTGTAAAATTGCATATTTCTTGTTCA
TTGCAAAAGATTTAACAATTCGCATGAACTTAGTATTATTTCTGTTGAGT
ATCGGTTTATCGAAAAGTCAAGCTGGATTAATTGTTGGCTTACGGTTGGT
CAGCGTTGTTGGGTTTTCTCCGTTCATCGGAATGATATCGGATAAATATC
GGGTTCATCGTCTGACGATTGTGCTTTGTTCCAttatcactttcattttc
aacgCCATGCAGCCTTTCCTTGCGTTGAAGTTCGGTTCCAAAACATTTCT
GTATTGCTCAGCTGGAAGTGAAGAGAACCGAAACTCGACAACATCACACC
TGAACACGACCTCGTCATTCAGTACAGAATCTCACACTAGTACTAGTCCT
CCTGACCAACAAGTTTTGTTCTGGATGATGTTTGCTGTCAATTTGATCCA
ATCGCTATTCGATGGCTCCTTAGATGCTTTTATAGATACTGGAGTCATGT
TACGTATCAAACAATCCAACGAAAATGGCGAGAAAAATAAGTATGGACAT
CAACGGATCTTTGGTGTTCTCGGTCAATTGGTTTGTCCAATCATCGGGAA
TTATTCGATCGCATTATTCCCGAGTGATCACGTGACTTGTTATACCGGTG
TGTTCATTTTATACGGATTTCTTTCCATTTGTTATATGCTAACCTTGCTT
TGGTTGTTTCAAGGACTGAAGATGGAGGTTCACGATTTGATGGATAGCGA
AGAAGAAGCACCACTTGAGCagaaaggagaaaaagaaaagCTTGAACAAC
AACCGTTCCGGACAGTTTTATTTCGGACACTTTTTGAGGATGAGATGTTA
GTCATGGTATTGACGTTATTTGGTATCGGTTGTTTAATGTCCGAATTTCT
TTATTACAGTTTTCCATACCTTAAAGATCTGAACGCAACTACCATGGACT
TGAACTTATACCTCATTATTCTTACTGTTGGAAACTTCATTGGTTTTCTG
ATCATCCCGAAGCTGGTGCGTCTCGTGAAAGGTCCATTCCCCACCATATT
TATATTGCTGATCGTGTTAGTGTTGCGGTTCAGCCTGGTGGCTGCTTTCA
ATGACCCGAAAATAATCAGCATTGTTCAGATTCtctcgattttcgatttt
ccaaTTACAGAGACGGTGGGTTTGGAGTTTGTTTTAAAGAAATCTCCGAA
GCGTGTTCTTACAAGTATGTATGGAATCATCAATGCTGTTCAATATTCAC
TTCCCGAATGTGTGGGCAACACCCTAGGTGGATATATCTATGAAAAGTTT
GGTGCTAAAGTGTTGTTTTATGGTTGCTCAGTGGTCGCTGCTACACTCTC
CCTCACCCTTGTTTTATGGATTGTCAAAAGACGGATTCAAGAGTCCAAAC
AAGTTCGAGAAAAAAATGGACAAGAATTAACTCTTGTTGAAAAGTCGTag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021859-exon-sc0000395-1491911889:226054..227749 | TCONS_00021859-exon-sc0000395-1491911889:226054..227749 | Clytia hemisphaerica | exon |
| TCONS_00021859-exon-sc0000395-1510915933:226054..227749 | TCONS_00021859-exon-sc0000395-1510915933:226054..227749 | Clytia hemisphaerica | exon |
| TCONS_00021859-exon-sc0000395-1575043694:226054..227749 | TCONS_00021859-exon-sc0000395-1575043694:226054..227749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:226054..227749 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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