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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021855 ID=TCONS_00021855|Name=TCONS_00021855|organism=Clytia hemisphaerica|type=transcript|length=1047bp
CCAAACTAAACCACTACCACTTCCAAACTTTGAAGAGTTCATCCCAGAAT
GTTACATTGGATTATTTCAAACAATGGATATTTCAGACATTGTACCTTCT
CCACCTCAAACCTCAACCCAACCCTCGGTACTGGCACCTAATGCGACTCA
ATGGCCCAACAGTACTGGTCCAGGAGAAGGGCCTCCACCTGTTGGAAACC
TCAACGATTTGAATTTCGCATATTATATTGGACCATGTATAGCAGGTTTT
ATCATGTTTTGGAACTTGTTATTAATTTGGGGATTGTTAACCGATCGTAG
ACAATCACGACTTTCATTAaccaaaaaattatttgtctATCACTCCTGCA
CCGATCTAATTGCTGGTGTTTTCGTTGTTCCTATACAGATCATTGTCCAC
TTAGGCCTTGGTTACACTTGCTGGTTTATGAGTTTCGCATTGATGTTAAC
CTCATTCTCGCAATGTTCTGGGATAAGTACGTTGGTCACTATTTCCGTAT
TACGGTATCTTGCCATTAAGCACCCGAACAACCCGGTAGCACCGAACAAG
ATTATGATTGCTATGCTGGCACAGTTTTTACTAAACGCTTGTATAGCAGT
ACATACTTTTGTTATTTACTTTAATCGTTCAACAACACTAATGCTGGCTT
CAAATTtcatattcttattttgccaTCTTTTCACATACAGTGTATTGCTT
GTAATATTTAATATCCAATCTTCAAGACTTATATATCACCATGTCAGAAC
ACGGAGTGAGAGATACGATTTAACAAATAACGAAGCTCACTTTAAAGCTG
TATCTACATTACGCATGATCACAATTTGTTACATAGTGTGTGTCATGCCT
TTTACATTTTATGTCTTCTTTTTAGCGAACTATTTACAAAGTGGGCGGCC
GAAATTGAGCGTTTATTTTCGCTACATACAAAACTTGATGCCGTTCCATA
TTCTTTATCTTTTGAACTGTGGACTCACTGCAGCTATCTTTGTGGCGAAA
ATGAATATATTTACGAGATTATGTCCGTATTTACGGTTCGATCGAAG Run BLAST on NCBI protein sequence of TCONS_00021855-protein >TCONS_00021855-protein ID=TCONS_00021855-protein|Name=TCONS_00021855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
QTKPLPLPNFEEFIPECYIGLFQTMDISDIVPSPPQTSTQPSVLAPNATQ
WPNSTGPGEGPPPVGNLNDLNFAYYIGPCIAGFIMFWNLLLIWGLLTDRR
QSRLSLTKKLFVYHSCTDLIAGVFVVPIQIIVHLGLGYTCWFMSFALMLT
SFSQCSGISTLVTISVLRYLAIKHPNNPVAPNKIMIAMLAQFLLNACIAV
HTFVIYFNRSTTLMLASNFIFLFCHLFTYSVLLVIFNIQSSRLIYHHVRT
RSERYDLTNNEAHFKAVSTLRMITICYIVCVMPFTFYVFFLANYLQSGRP
KLSVYFRYIQNLMPFHILYLLNCGLTAAIFVAKMNIFTRLCPYLRFDR Run BLAST on NCBI transcript from alignment at sc0000395:105867..106913 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021855 ID=TCONS_00021855|Name=TCONS_00021855|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at sc0000395:105867..106913 (Clytia hemisphaerica)
CTTCGATCGAACCGTAAATACGGACATAATCTCGTAAATATATTCATTTT
CGCCACAAAGATAGCTGCAGTGAGTCCACAGTTCAAAAGATAAAGAATAT
GGAACGGCATCAAGTTTTGTATGTAGCGAAAATAAACGCTCAATTTCGGC
CGCCCACTTTGTAAATAGTTCGCTAAAAAGAAGACATAAAATGTAAAAGG
CATGACACACACTATGTAACAAATTGTGATCATGCGTAATGTAGATACAG
CTTTAAAGTGAGCTTCGTTATTTGTTAAATCGTATCTCTCACTCCGTGTT
CTGACATGGTGATATATAAGTCTTGAAGATTGGATATTAAATATTACAAG
CAATACACTGTATGTGAAAAGAtggcaaaataagaatatgaAATTTGAAG
CCAGCATTAGTGTTGTTGAACGATTAAAGTAAATAACAAAAGTATGTACT
GCTATACAAGCGTTTAGTAAAAACTGTGCCAGCATAGCAATCATAATCTT
GTTCGGTGCTACCGGGTTGTTCGGGTGCTTAATGGCAAGATACCGTAATA
CGGAAATAGTGACCAACGTACTTATCCCAGAACATTGCGAGAATGAGGTT
AACATCAATGCGAAACTCATAAACCAGCAAGTGTAACCAAGGCCTAAGTG
GACAATGATCTGTATAGGAACAACGAAAACACCAGCAATTAGATCGGTGC
AGGAGTGATagacaaataattttttggtTAATGAAAGTCGTGATTGTCTA
CGATCGGTTAACAATCCCCAAATTAATAACAAGTTCCAAAACATGATAAA
ACCTGCTATACATGGTCCAATATAATATGCGAAATTCAAATCGTTGAGGT
TTCCAACAGGTGGAGGCCCTTCTCCTGGACCAGTACTGTTGGGCCATTGA
GTCGCATTAGGTGCCAGTACCGAGGGTTGGGTTGAGGTTTGAGGTGGAGA
AGGTACAATGTCTGAAATATCCATTGTTTGAAATAATCCAATGTAACATT
CTGGGATGAACTCTTCAAAGTTTGGAAGTGGTAGTGGTTTAGTTTGG Coding sequence (CDS) from alignment at sc0000395:105867..106913 >TCONS_00021855 ID=TCONS_00021855|Name=TCONS_00021855|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000395:105867..106913 (Clytia hemisphaerica)
TCGATCGAACCGTAAATACGGACATAATCTCGTAAATATATTCATTTTCG
CCACAAAGATAGCTGCAGTGAGTCCACAGTTCAAAAGATAAAGAATATGG
AACGGCATCAAGTTTTGTATGTAGCGAAAATAAACGCTCAATTTCGGCCG
CCCACTTTGTAAATAGTTCGCTAAAAAGAAGACATAAAATGTAAAAGGCA
TGACACACACTATGTAACAAATTGTGATCATGCGTAATGTAGATACAGCT
TTAAAGTGAGCTTCGTTATTTGTTAAATCGTATCTCTCACTCCGTGTTCT
GACATGGTGATATATAAGTCTTGAAGATTGGATATTAAATATTACAAGCA
ATACACTGTATGTGAAAAGAtggcaaaataagaatatgaAATTTGAAGCC
AGCATTAGTGTTGTTGAACGATTAAAGTAAATAACAAAAGTATGTACTGC
TATACAAGCGTTTAGTAAAAACTGTGCCAGCATAGCAATCATAATCTTGT
TCGGTGCTACCGGGTTGTTCGGGTGCTTAATGGCAAGATACCGTAATACG
GAAATAGTGACCAACGTACTTATCCCAGAACATTGCGAGAATGAGGTTAA
CATCAATGCGAAACTCATAAACCAGCAAGTGTAACCAAGGCCTAAGTGGA
CAATGATCTGTATAGGAACAACGAAAACACCAGCAATTAGATCGGTGCAG
GAGTGATagacaaataattttttggtTAATGAAAGTCGTGATTGTCTACG
ATCGGTTAACAATCCCCAAATTAATAACAAGTTCCAAAACATGATAAAAC
CTGCTATACATGGTCCAATATAATATGCGAAATTCAAATCGTTGAGGTTT
CCAACAGGTGGAGGCCCTTCTCCTGGACCAGTACTGTTGGGCCATTGAGT
CGCATTAGGTGCCAGTACCGAGGGTTGGGTTGAGGTTTGAGGTGGAGAAG
GTACAATGTCTGAAATATCCATTGTTTGAAATAATCCAATGTAACATTCT
GGGATGAACTCTTCAAAGTTTGGAAGTGGTAGTGGTTTAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021855-exon-sc0000395-1491911889:105867..106913 | TCONS_00021855-exon-sc0000395-1491911889:105867..106913 | Clytia hemisphaerica | exon |
| TCONS_00021855-exon-sc0000395-1510915933:105867..106913 | TCONS_00021855-exon-sc0000395-1510915933:105867..106913 | Clytia hemisphaerica | exon |
| TCONS_00021855-exon-sc0000395-1575043694:105867..106913 | TCONS_00021855-exon-sc0000395-1575043694:105867..106913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:105867..106913 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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