TCONS_00021836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021836
Unique NameTCONS_00021836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021836 ID=TCONS_00021836|Name=TCONS_00021836|organism=Clytia hemisphaerica|type=transcript|length=1737bp
CTCAGGGGTTGATTTTCTTGTTGTTAGCTTGACCGTTTCAAAAAGTTAAT
CTTCAAGCAAGTTTCAAGTGAAAGATATGAAAAAGAAAGAGCATAACAAG
AGTCGATCACGTAAGAATAATAACGAAGTTGTATCAACCGAACGTTTGTA
CACGTTTTACGTTCTCATCCCGTTCGTTAACGTCACTCACACTTTACGGA
AACTCTCAAAGCGTGCCACCGTACGCGAACTTAAAGAAGTTATCGAAATC
ACGTGTGGTATTCCTACATCACTTCAACGTATCTATTTCCTCGACCAATC
AGATCTGACGGATGATTGCGTTTTGACGTCGTTGGATATCGTTAATAAGG
CTACGTTTACATTAGCTGTTTGGAATAAATGGGAAAACATTATACGTAGT
GTTTACAAAAACGATTTCAAAGGTGTTACGGATTACGTGCTTTGTTCTGA
TAGGGGTCATAAAGTGTCTCCCGTGGCAACCCGACAGCGACGTGGCGAAG
TAGCGCTCTTAACGGCGGTTAAGTTGGGAAACGTTGACGTTATACGTAGA
CTACTGGAAGAAGGAATCAACGTAAACGCAAGAACAGAATTAGGTTATAC
CCCTCTTCATATTGCCGTTGCAAATGGAAAATATCGCTGCATTGATTTCC
TACTTGAAAAAGGAGCTATAGACGATTCCAAAACGAACCCGAACGGACAA
GAAGCGGTCCGCTTATCAAAAGAAAACGGGTACCCTGATAGTGAGCGACA
TCTCTGTATGTTTGAATGGCAACTCAGAGCTAAAACAGCTCCTTCGCGAC
CCACAAAATTGGTTCCTCTGCTTCAACATCAACAGTTTGACTCAAAGAAT
CCAACTTGGTTCGATGGGCCCTTAGCAACGAAATTTGTTTGTAGTACATT
ACCACAGAAAGAGTTCTCCGGTACACGTATCAATGCACCCCCGGTTGTAC
CGGTCGTCCCACCTTACCAAGACGATAAAGaatatttcgAAAAAACAGAT
TCAGGCGCAGAGAGAATGCACACATACATTTCCCATGAAAACTGGCTTCG
TCGAAAACAAGAAGAAGCCGAGATGCTACGACAAAAACAAGAACAACTGG
CGGCCATGCGACTAATCGAAAAAGAACGCGAGGAGACCGAGAAGAAACGT
TTAATGGTCTTAAGGAAAAGAGAACACGAGAAAAGAACATTGGCTATAAA
AGATTCGGCGAATGAAAAATACAGGAAGAAACAAGGTATTTATGAAGATT
ATACTTATGTACCGGGTTATTCGAAGTCGATTTTACAGCAATACATGAGT
GATATGATGACGTAATAATGTCAATCATGCCCTTATTATCAACATCTTGG
TTGAAATTATTTTGGAAAGGGTAATCATTGGAGCGCTGTATCACTTTACG
TTACCGAGCTATCCTCGTAAAATGGCAgcaatttctcaaggaaaatgccG
TGGCGGTATAATCAGATATTGAGTACGAGCATGGACTGACAATTCAAGAT
ATCCTTGCCTATTGTGCAACGAAGTCACCAAGTATTCATGAACATATTAC
ATAGTAGAGGCTGCTATGTCTTCCTTGTGAAGCACCTTAAGAAATGGGGT
ATTATGGTTTGATCTTTTTAGGGTGAaaagatttgaaagtttttgataaa
tttttcacatAAACCGATGTAAATATCTCTATGCTTCTaatgttcataaa
aaaattgcaaaaaggaaaaaataaaacaaaacaaaat
Run BLAST on NCBI

protein sequence of TCONS_00021836-protein

>TCONS_00021836-protein ID=TCONS_00021836-protein|Name=TCONS_00021836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MKKKEHNKSRSRKNNNEVVSTERLYTFYVLIPFVNVTHTLRKLSKRATVR
ELKEVIEITCGIPTSLQRIYFLDQSDLTDDCVLTSLDIVNKATFTLAVWN
KWENIIRSVYKNDFKGVTDYVLCSDRGHKVSPVATRQRRGEVALLTAVKL
GNVDVIRRLLEEGINVNARTELGYTPLHIAVANGKYRCIDFLLEKGAIDD
SKTNPNGQEAVRLSKENGYPDSERHLCMFEWQLRAKTAPSRPTKLVPLLQ
HQQFDSKNPTWFDGPLATKFVCSTLPQKEFSGTRINAPPVVPVVPPYQDD
KEYFEKTDSGAERMHTYISHENWLRRKQEEAEMLRQKQEQLAAMRLIEKE
REETEKKRLMVLRKREHEKRTLAIKDSANEKYRKKQGIYEDYTYVPGYSK
SILQQYMSDMMT
Run BLAST on NCBI

transcript from alignment at sc0000395:238178..240467-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021836 ID=TCONS_00021836|Name=TCONS_00021836|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000395:238178..240467- (Clytia hemisphaerica)
CTCAGGGGTTGATTTTCTTGTTGTTAGCTTGACCGTTTCAAAAAGTTAAT
CTTCAAGCAAGTTTCAAGTGAAAGATATGAAAAAGAAAGAGCATAACAAG
AGTCGATCACGTAAGAATAATAACGAAGTTGTATCAACCGAACGTTTGTA
CACGTTTTACGTTCTCATCCCGTTCGTTAACGTCACTCACACTTTACGGA
AACTCTCAAAGCGTGCCACCGTACGCGAACTTAAAGAAGTTATCGAAATC
ACGTGTGGTATTCCTACATCACTTCAACGTATCTATTTCCTCGACCAATC
AGATCTGACGGATGATTGCGTTTTGACGTCGTTGGATATCGTTAATAAGG
CTACGTTTACATTAGCTGTTTGGAATAAATGGGAAAACATTATACGTAGT
GTTTACAAAAACGATTTCAAAGGTGTTACGGATTACGTGCTTTGTTCTGA
TAGGGGTCATAAAGTGTCTCCCGTGGCAACCCGACAGCGACGTGGCGAAG
TAGCGCTCTTAACGGCGGTTAAGTTGGGAAACGTTGACGTTATACGTAGA
CTACTGGAAGAAGGAATCAACGTAAACGCAAGAACAGAATTAGGTTATAC
CCCTCTTCATATTGCCGTTGCAAATGGAAAATATCGCTGCATTGATTTCC
TACTTGAAAAAGGAGCTATAGACGATTCCAAAACGAACCCGAACGGACAA
GAAGCGGTCCGCTTATCAAAAGAAAACGGGTACCCTGATAGTGAGCGACA
TCTCTGTATGTTTGAATGGCAACTCAGAGCTAAAACAGCTCCTTCGCGAC
CCACAAAATTGGTTCCTCTGCTTCAACATCAACAGTTTGACTCAAAGAAT
CCAACTTGGTTCGATGGGCCCTTAGCAACGAAATTTGTTTGTAGTACATT
ACCACAGAAAGAGTTCTCCGGTACACGTATCAATGCACCCCCGGTTGTAC
CGGTCGTCCCACCTTACCAAGACGATAAAGGTAAATCTGAATCTCCTTCA
AATAGTATGTGGTTACACTTTTTTTTTTAGAAGAACATCCAAAATTTTTG
AAGCCTTCGAATATTCTTAACTTATTGACCATTTTCCTAAGAAATAGGGT
GTTTTTGAGTCTACAAAGCCTTAAAATGTTAATAACTTGTTCTTAACATT
TTGGACAGCGAAGCCTTGTGTTCTTATATAGTTTGTTTTTATAAAAAAAC
GTGTTTGCTAGTTACAAAGGCCCTATAAAGTTAAAGTGGTACTTTCGTTA
ATATTCCTTTGTTGCAAGGATCTCACTTATATCCAGCATTCCAGAGGATT
GGAAAATAATTTCAGCTTTTTGTATTATATGTATTTATCAATTTTTAGAA
TATTTCGAAAAAACAGATTCAGGCGCAGAGAGGTAAGTGATATTCTAAAC
CTTTTTTTCACCGATGAAAAGCTCAGTTTGTTATCACTATTTATGCAAAT
AATAGTTGACAGGGATAAAAGTTTGTAGTGAACATTGGAAGAATATCACA
CCCTTTGCAAGACCTTGGGTGATATTGGTCAAACAAATCTTTGAGAATCC
TTTCTTTTCCCTCGTAGAATGCACACATACATTTCCCATGAAAACTGGCT
TCGTCGAAAACAAGAAGAAGCCGAGATGCTACGACAAAAACAAGAACAAC
TGGCGGCCATGCGACTAATCGAAAAAGAACGCGAGGAGACCGAGAAGAAA
CGTTTAATGGTCTTAAGGAAAAGAGAACACGAGAAAAGAACATTGGCTAT
AAAAGATTCGGCGAATGAAAAATACAGGAAGAAACAAGGTATTTATGAAG
ATTATACTTATGTACCGGGTTATTCGAAGTCGATTTTACAGCAATACATG
AGTGATATGATGACGTAATAATGTCAATCATGCCCTTATTATCAACATCT
TGGTTGAAATTATTTTGGAAAGGGTAATCATTGGAGCGCTGTATCACTTT
ACGTTACCGAGCTATCCTCGTAAAATGGCAGCAATTTCTCAAGGAAAATG
CCGTGGCGGTATAATCAGATATTGAGTACGAGCATGGACTGACAATTCAA
GATATCCTTGCCTATTGTGCAACGAAGTCACCAAGTATTCATGAACATAT
TACATAGTAGAGGCTGCTATGTCTTCCTTGTGAAGCACCTTAAGAAATGG
GGTATTATGGTTTGATCTTTTTAGGGTGAAAAGATTTGAAAGTTTTTGAT
AAATTTTTCACATAAACCGATGTAAATATCTCTATGCTTCTAATGTTCAT
AAAAAAATTGCAAAAAGGAAAAAATAAAACAAAACAAAAT

Coding sequence (CDS) from alignment at sc0000395:238178..240467-

>TCONS_00021836 ID=TCONS_00021836|Name=TCONS_00021836|organism=Clytia hemisphaerica|type=CDS|length=3717bp|location=Sequence derived from alignment at sc0000395:238178..240467- (Clytia hemisphaerica)
AATGCACACATACATTTCCCATGAAAACTGGCTTCGTCGAAAACAAGAAG
AAGCCGAGATGCTACGACAAAAACAAGAACAACTGGCGGCCATGCGACTA
ATCGAAAAAGAACGCGAGGAGACCGAGAAGAAACGTTTAATGGTCTTAAG
GAAAAGAGAACACGAGAAAAGAACATTGGCTATAAAAGATTCGGCGAATG
AAAAATACAGGAAGAAACAAGGTATTTATGAAGATTATACTTATGTACCG
GGTTATTCGAAGTCGATTTTACAGCAATACATGAGTGATATGATGACGTA
AAATATTTCGAAAAAACAGATTCAGGCGCAGAGAGATGAAAAAGAAAGAG
CATAACAAGAGTCGATCACGTAAGAATAATAACGAAGTTGTATCAACCGA
ACGTTTGTACACGTTTTACGTTCTCATCCCGTTCGTTAACGTCACTCACA
CTTTACGGAAACTCTCAAAGCGTGCCACCGTACGCGAACTTAAAGAAGTT
ATCGAAATCACGTGTGGTATTCCTACATCACTTCAACGTATCTATTTCCT
CGACCAATCAGATCTGACGGATGATTGCGTTTTGACGTCGTTGGATATCG
TTAATAAGGCTACGTTTACATTAGCTGTTTGGAATAAATGGGAAAACATT
ATACGTAGTGTTTACAAAAACGATTTCAAAGGTGTTACGGATTACGTGCT
TTGTTCTGATAGGGGTCATAAAGTGTCTCCCGTGGCAACCCGACAGCGAC
GTGGCGAAGTAGCGCTCTTAACGGCGGTTAAGTTGGGAAACGTTGACGTT
ATACGTAGACTACTGGAAGAAGGAATCAACGTAAACGCAAGAACAGAATT
AGGTTATACCCCTCTTCATATTGCCGTTGCAAATGGAAAATATCGCTGCA
TTGATTTCCTACTTGAAAAAGGAGCTATAGACGATTCCAAAACGAACCCG
AACGGACAAGAAGCGGTCCGCTTATCAAAAGAAAACGGGTACCCTGATAG
TGAGCGACATCTCTGTATGTTTGAATGGCAACTCAGAGCTAAAACAGCTC
CTTCGCGACCCACAAAATTGGTTCCTCTGCTTCAACATCAACAGTTTGAC
TCAAAGAATCCAACTTGGTTCGATGGGCCCTTAGCAACGAAATTTGTTTG
TAGTACATTACCACAGAAAGAGTTCTCCGGTACACGTATCAATGCACCCC
CGGTTGTACCGGTCGTCCCACCTTACCAAGACGATAAAGAATGCACACAT
ACATTTCCCATGAAAACTGGCTTCGTCGAAAACAAGAAGAAGCCGAGATG
CTACGACAAAAACAAGAACAACTGGCGGCCATGCGACTAATCGAAAAAGA
ACGCGAGGAGACCGAGAAGAAACGTTTAATGGTCTTAAGGAAAAGAGAAC
ACGAGAAAAGAACATTGGCTATAAAAGATTCGGCGAATGAAAAATACAGG
AAGAAACAAGGTATTTATGAAGATTATACTTATGTACCGGGTTATTCGAA
GTCGATTTTACAGCAATACATGAGTGATATGATGACGTAAAATATTTCGA
AAAAACAGATTCAGGCGCAGAGAGATGAAAAAGAAAGAGCATAACAAGAG
TCGATCACGTAAGAATAATAACGAAGTTGTATCAACCGAACGTTTGTACA
CGTTTTACGTTCTCATCCCGTTCGTTAACGTCACTCACACTTTACGGAAA
CTCTCAAAGCGTGCCACCGTACGCGAACTTAAAGAAGTTATCGAAATCAC
GTGTGGTATTCCTACATCACTTCAACGTATCTATTTCCTCGACCAATCAG
ATCTGACGGATGATTGCGTTTTGACGTCGTTGGATATCGTTAATAAGGCT
ACGTTTACATTAGCTGTTTGGAATAAATGGGAAAACATTATACGTAGTGT
TTACAAAAACGATTTCAAAGGTGTTACGGATTACGTGCTTTGTTCTGATA
GGGGTCATAAAGTGTCTCCCGTGGCAACCCGACAGCGACGTGGCGAAGTA
GCGCTCTTAACGGCGGTTAAGTTGGGAAACGTTGACGTTATACGTAGACT
ACTGGAAGAAGGAATCAACGTAAACGCAAGAACAGAATTAGGTTATACCC
CTCTTCATATTGCCGTTGCAAATGGAAAATATCGCTGCATTGATTTCCTA
CTTGAAAAAGGAGCTATAGACGATTCCAAAACGAACCCGAACGGACAAGA
AGCGGTCCGCTTATCAAAAGAAAACGGGTACCCTGATAGTGAGCGACATC
TCTGTATGTTTGAATGGCAACTCAGAGCTAAAACAGCTCCTTCGCGACCC
ACAAAATTGGTTCCTCTGCTTCAACATCAACAGTTTGACTCAAAGAATCC
AACTTGGTTCGATGGGCCCTTAGCAACGAAATTTGTTTGTAGTACATTAC
CACAGAAAGAGTTCTCCGGTACACGTATCAATGCACCCCCGGTTGTACCG
GTCGTCCCACCTTACCAAGACGATAAAGAATGCACACATACATTTCCCAT
GAAAACTGGCTTCGTCGAAAACAAGAAGAAGCCGAGATGCTACGACAAAA
ACAAGAACAACTGGCGGCCATGCGACTAATCGAAAAAGAACGCGAGGAGA
CCGAGAAGAAACGTTTAATGGTCTTAAGGAAAAGAGAACACGAGAAAAGA
ACATTGGCTATAAAAGATTCGGCGAATGAAAAATACAGGAAGAAACAAGG
TATTTATGAAGATTATACTTATGTACCGGGTTATTCGAAGTCGATTTTAC
AGCAATACATGAGTGATATGATGACGTAAAATATTTCGAAAAAACAGATT
CAGGCGCAGAGAGATGAAAAAGAAAGAGCATAACAAGAGTCGATCACGTA
AGAATAATAACGAAGTTGTATCAACCGAACGTTTGTACACGTTTTACGTT
CTCATCCCGTTCGTTAACGTCACTCACACTTTACGGAAACTCTCAAAGCG
TGCCACCGTACGCGAACTTAAAGAAGTTATCGAAATCACGTGTGGTATTC
CTACATCACTTCAACGTATCTATTTCCTCGACCAATCAGATCTGACGGAT
GATTGCGTTTTGACGTCGTTGGATATCGTTAATAAGGCTACGTTTACATT
AGCTGTTTGGAATAAATGGGAAAACATTATACGTAGTGTTTACAAAAACG
ATTTCAAAGGTGTTACGGATTACGTGCTTTGTTCTGATAGGGGTCATAAA
GTGTCTCCCGTGGCAACCCGACAGCGACGTGGCGAAGTAGCGCTCTTAAC
GGCGGTTAAGTTGGGAAACGTTGACGTTATACGTAGACTACTGGAAGAAG
GAATCAACGTAAACGCAAGAACAGAATTAGGTTATACCCCTCTTCATATT
GCCGTTGCAAATGGAAAATATCGCTGCATTGATTTCCTACTTGAAAAAGG
AGCTATAGACGATTCCAAAACGAACCCGAACGGACAAGAAGCGGTCCGCT
TATCAAAAGAAAACGGGTACCCTGATAGTGAGCGACATCTCTGTATGTTT
GAATGGCAACTCAGAGCTAAAACAGCTCCTTCGCGACCCACAAAATTGGT
TCCTCTGCTTCAACATCAACAGTTTGACTCAAAGAATCCAACTTGGTTCG
ATGGGCCCTTAGCAACGAAATTTGTTTGTAGTACATTACCACAGAAAGAG
TTCTCCGGTACACGTATCAATGCACCCCCGGTTGTACCGGTCGTCCCACC
TTACCAAGACGATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012254XLOC_012254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021836-proteinTCONS_00021836-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021836-exon-sc0000395-1575043694:239488..240467TCONS_00021836-exon-sc0000395-1575043694:239488..240467Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1575043694:239086..239119TCONS_00021836-exon-sc0000395-1575043694:239086..239119Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1575043694:238178..238900TCONS_00021836-exon-sc0000395-1575043694:238178..238900Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1510915933:239488..240467TCONS_00021836-exon-sc0000395-1510915933:239488..240467Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1510915933:239086..239119TCONS_00021836-exon-sc0000395-1510915933:239086..239119Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1510915933:238178..238900TCONS_00021836-exon-sc0000395-1510915933:238178..238900Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1491911889:239488..240467TCONS_00021836-exon-sc0000395-1491911889:239488..240467Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1491911889:239086..239119TCONS_00021836-exon-sc0000395-1491911889:239086..239119Clytia hemisphaericaexon
TCONS_00021836-exon-sc0000395-1491911889:238178..238900TCONS_00021836-exon-sc0000395-1491911889:238178..238900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:238178..240467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.162529	0.113208	0.105156	0	46.1842	37.2872	30.6868	31.9424	14.7525	23.0235	14.0905	13.9943	2.60967	3.97705	0.0659209	0.268824	2.31819	4.82359	8.16964	5.21718	4.9612	5.1245	3.03488	3.1464	5.13529	5.09483	3.82045	6.79547	1.15968	0.498868
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00021836 vs. Swiss-Prot (Human)
Match: ANR60 (Ankyrin repeat domain-containing protein 60 OS=Homo sapiens GN=ANKRD60 PE=4 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.561e-21
Identity = 60/195 (30.77%), Postives = 99/195 (50.77%), Query Frame = 2 
Query:  218 TVRELKEVIEITCGIPTSLQRIYFLDQSDLTDDCVLTSLDIVNKATFTLAVW--NKWENIIRSVYKNDFKGVTDYVLCSDRGHKVSPVATRQ---------RRGEVALLTAVKLGNVDVIRRLLEEGINVNARTELGYTPLHIAVANGKYRCIDFLLEKGA-IDDSKTNPNGQEAVRLSKENGYPDSERHLCMFE 766
            TVRELKE +++  GIP +LQR+ +LD+  L DD  L   D+V     +L +W  + W  ++ +  + D   ++   L  D  ++ +     +         +R  VAL  A   G+ D ++ LLE G +  +R+ LG TPLH+A A G+  CI  LL+ GA I D   +  G+  + ++    +  SER + +  
Sbjct:  117 TVRELKEELDLMVGIPFNLQRLQYLDEGVLMDDTTLKFHDVVPGGIISLCIWHHDGWTELVLAAVEGDPSKLSCLGLTEDSFYRTANSEHFEGEKWKHWTSQRAFVALYVASHRGHFDAVQYLLEHGASCLSRSPLGRTPLHVAAAMGRSDCIILLLQHGASIHDR--DAKGETPISIAHRLNHTLSERQMVLLH 309
The following BLAST results are available for this feature:
BLAST of TCONS_00021836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR602.561e-2130.77Ankyrin repeat domain-containing protein 60 OS=Hom... [more]
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