TCONS_00021824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021824
Unique NameTCONS_00021824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021824 ID=TCONS_00021824|Name=TCONS_00021824|organism=Clytia hemisphaerica|type=transcript|length=2637bp
CAGCATACTTGCATCCATACCACAAGTTTACAACCAAATCATCCGTGAAG
ATAAGTGTCAACTATTTGTTACAAGTTTCGATTGGGTTGTGAAGGGCCGA
TTAACGTTCGGTAAGATGACATTTCCGAAAACAGCAATGAGTCTTGGTCG
GTGTATATCAAGCTGTGTTCATTTTGAGAGTGAGCGTGGTGTAAAAGAAT
GTCGATCCATTAATTATAATCCCGCATTGAGCCAATGTGAAGTCTTTAAG
AAAGAATTGACCATGGCAGTACCTGCTATTTTATTCAAAGATGAAGCGCC
GTTGTTTGAGGATGTTTCAGGATGGTTTCATTACAGCCCTAATCCAAACA
CAACAATGGTTGGGCCGAAATGCGCAGCTGAAGGAAATCCATGTGGTGTT
GGCAAATGTACGGATACTTGTGACAGCTTCAAATGTGAATGCAATGTTGA
ACAATTGAAAGAGGACGACGTCTGCAAACTCAAAGATCCAAAAAGCTTCT
GCAAATTGAACAATTTCATTGGAAGAGAAATGACTGTTTCCGATAACAAT
CAAAAGTTGAATGTCAAAACTGCAACGGAGATTGAAGCTGTTGATGGGAC
AACATACACATTTGAATTGGACCCAACCGAAGAGGGATGCGTTTTTGTTG
AATCTACTACTAGAGCATCTACAATTTCCTTTCTTTATAAGACATGTCAA
TTCTACGATTCACACAATTCGCTTACTTATTCACTTGACACGTGTGACTA
CAAAGCACAAAAGCTGGTTGGGCTGTATGACCACGGAAAGATATTTGTCA
GCCGTTACGGTATTCATGGCGGCTTCCGAATCAAATCGAACAAACTTGAT
CATCTTCTTGACGGGACCGTTACTGGAATCACCACAACTGACGCAGGCGA
CTTTCAAATTGCAGTGAATTTCTATAATCAATTTGAACTGACCGGATTAA
TCGATTGTACCATCATTCTAAAAAGGTTTGACGATGGTGAAACAATGACC
TGGAGAAAAATTGGTTGTCAAATACCATCAGttacgCCTACTCCTACGCC
AAGTCTATAAGCACCTGCTCCACGCCAAATTTATAAGCACCTGCTCCACG
GCAAGTCAATAAGCACCTGCTCCACGCCAAATTTATAAGCACCTGCTCCA
CGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTC
CACGCCAAGTCTATAAGCACCTGGTCCACGCCAAGTCAATAAGCACCTGC
TCCACGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACGT
GCTCCACGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCAC
CTGCTCCACGCCAAGTCTATAAGCACCTGGTCCACGCCAAGTCAATAAGC
ACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCTGGCCAAGTCAATAA
GCACCTGCTCCACGCCAAGTCAATAAGCATCTGCTCCACGCCGACTCAAT
AAGCACCTGGTCCACGTCAAGTCAATAAGCAGTGCAATAAAAGCTGTGCG
CTCCATGGGGATCATCATTGCTGTATACTGTTTTGAGCACATAGATTTTA
GCAGGGTTGACAGTAAGATAGAATTAATCCCGCCAGTGGCTTCTTGGGAA
AATTTCCTATTCTGGGATAGAGAAATAATTGAACCAGTGCTTGCCACACA
ACAAAGCAGTATCGTGTTTCTGAAGTTACTTGATTCTCAATTAAGCTTGG
GAAAATACAATTTATGCTGGCAAGTTCTTAACCATGCTAACAATATAAAA
ACTCCCAAGATGAACTGTTAAATGGCAGGACCGAGTTGAAGTCGTGCCCA
GGCTCCTAAATCGTGGTTGATAACTATTGTgagattttaaacattttcga
gaaatttcaccaaaaaaactttacaaattacTTGAAAATTTACCTGTAAC
TATTTATTCCCAATAGCTAATAGGgtatcaatattttttataataaatct
ttgttttattttaattctCCTTAAAACTATAACACGTACCGTAACTGTct
aaaatttctcaaatctTATTTGTTACTGAATctttagtttttaattttta
gttcgttctttgtttttgtttttgtgtgtcGTTATGATTATACATAACTA
ACATTGCACGTCGTGAACGATGTATTAGACCCGGGGGAGGCGAATACTAG
GTTTGTGAGATGacaggtatgtccgagccaaagtttgaaaatcgactttt
AGATAcactgaatttcaaaaattttgttgctAAAATTGCTAACTTTAGAG
AGACTACTTCACCaaagtttcagccaaaattttcaaattttagtccaaat
ttcaagaatttatgaccatTTATGAGTCGATTTTTGATTCTCGTAATTTT
GGAAGGGACTCAGTTTACTTTTAACGGTTTTAGTatccctttgagggact
ttcgagggtgtgaaaaagggacccttcaTGGTTCGCAAATACCCGgcatc
cattttgcctaagCACCCCCCTTCCCGGGTATTAGGTTACATATGATCAT
TTAACGAAGCAAAAATACCAAATTAATATTATTccattattgtattattt
tagtatttgaaaGATATATTAACGGTGAATCTTCTTA
Run BLAST on NCBI

transcript from alignment at sc0000395:119576..125181-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021824 ID=TCONS_00021824|Name=TCONS_00021824|organism=Clytia hemisphaerica|type=transcript|length=5606bp|location=Sequence derived from alignment at sc0000395:119576..125181- (Clytia hemisphaerica)
CAGCATACTTGCATCCATACCACAAGTTTACAACCAAATCATCCGTGAAG
ATAAGTGTCAACTATTTGTTACAAGTTTCGATTGGGTTGTGAAGGGCCGA
TTAACGTTCGGTAAGATGACATTTCCGAAAACAGCAATGAGTCTTGGTCG
GTGTATATCAAGCTGTGTTCATTTTGAGAGTGAGCGTGGTGTAAAAGAAT
GTCGATCCATTAATTATAATCCCGCATTGAGCCAATGTGAAGTCTTTAAG
AAAGAATTGACCATGGCAGTACCTGCTATTTTATTCAAAGATGAAGCGCC
GTTGTTTGAGGATGTTTCAGGATGGTTTCATTACAGCCCTAATCCAAACA
CAACAATGGTAAGAGTATACACTTTATAAGAACAAACTATATAAGAACAT
AAGGATTCCATTACCAAAATATTGAGAACAAGTTTAGAACGTTTTAAGAC
TTTGTGGACTCTTAAACTACCGATTTCTTAGATGGATGAAAATACCCAAA
TATGGTAAAAAGAAAAACATATAAAGAACATTTTTAGACTTAAAACTTAA
AGTTAAGAGCATCTGAAGGCTTAAAAAATTTTGGATGCTGCTACGAAAAA
AATTACAAATAGTCCAAGAGAACCATATCATGTCAGGAGATTAGACACAT
TAGAGAGGAAAAATTGGCGTTTTTGGCACCCTCAGAAAGGCTTTTCTCGA
AATGAGAGAAAAAGAATTGACGTTTTTTGGACCTTTAGAGAGACTTTTCT
TTTTAATTTTTTCAAAGCGAAGTAGTTTGAAGTTTTACCACCCGCTACCT
TTCTATCATTCAGTCAGTTCCGCGCAGCCTTCCTAAATCGAGTGGCACCG
AAGGCGCCTAAAAGAAAAAGGGGACTCTAAGCTATCCAACGGACTATAAA
CGAACTTCTAACTCCTTCTAGATCTGGAGATATAAGCCTTTAAAGTTTGA
ACTAGCGATTTTCTTTAAAAAACTTGACCGTGGCACTTAAAGGGTTAAAC
TGTTGAATTTTGTAGTGCTCAGCGAGTGTTTCATTTAAAAACCCTAACAA
ATACCCTAATCGGTAGGAAGGAAGGAAGGGATTCATAAAAAACCGACAAA
CCGTAAGGGTGTCTTCCCGGGGGGGGGGGCACTCGTTCTAAAAAGTTTGA
CATCCTTCTGCCTCATTCTCTTCGTCAGACCTTATCAGACCCTTTCAAAA
AGGTAATTTTTGAGACATACAGATGGGAGATGTACACATGCACATGTAAA
GGTAAAACATATCCTTACAGTGCAGCACTGGTCAAAACATACCCTTACGG
TGCACTAGCTGAACCTTGAAAAAAAACGACTCATAAGTGCCGCACGTTTG
ATATATCATTTACCTTGATTGGCCCCCCCCCCCCCCCGGGTGTATTTTAG
AGGGAATCCACTAAAAGATTCGATAACTAAAAAGATAACACTATAGTAAT
CTAACAAGTTAATGTCAGAAGATGGGGATGAAAAGGTGGCAGGTGTTTGC
TAGAATTGGAGTTGCAGTTGGAAAGGTTAGTGAGAGGGTTCTGATAAACT
GCCGTTTCCAAACCTTCGACAATTTTTTCCTTACCAAAGTTCTAAGCTCA
CTTTTCCAAGGGATAGCGCTCTAACCCTACTGATGTGCCAGTTTCTGAAA
AGATGTACCTCAAAAGTAACCAGGAAGGAGCATACGATGCTTGGTCGTAC
AATGATCCAAAGAATCTAATGACTCATTTTCCTCTACTTTTGAAAAGATG
TACCTCAAAAGTAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGA
TCCAAAGAATCTAATGACTCATTTTCCTCTACTTTTGAAAAGATGTACCT
CAAAAGTAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGATCCAA
AGAATCTAATGACTCATTTTCCTCTACTTTTGAAAAGATGTACCTCAAAA
GTAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGATCCAAAGAAT
CTAATGACTCATTTTCCTCTACTTTTGAAAAGATGTACCTCAAAAGTAAC
CAGGAAGGAGCATACGATGCTTGGTCGTACAATGATCCAAAGAATCTAAT
GACTCATTTTCCTCTACTTTTGAAAAGGTTGGGCCGAAATGCGCAGCTGA
AGGAAATCCATGTGGTGTTGGCAAATGTACGGATACTTGTGACAGCTTCA
AATGTGAATGCAATGTTGAACAATTGAAAGAGGACGACGTCTGCAAACTC
AAAGATCGTAAGTTACATTTGACAGTGATTTTCATGGGAGTTTTAAGGGT
TCAAGATTTCTCAAGCATCAAATAAGAGGTAGATATTTTCATCTTTGTAA
TATACAGAGGCAGAGATAAATTCTATGACATTTTCGAAACAACGGCTTCT
GACAGATTTTTTGAACTTGATGAACACACTGGATAAATACAAGGATGTCT
AAATTAACCGTCATTTATAATTATTTTTGCTGGGAAAATAAACCAATCAG
AACGCCGCTTTTTAACTGGCGTCACAACCCACGTTTCTGTAAACAATGAA
ACGCGGGATCTCCCGCAGAAACTTTGGACATGCCGTAACTCACTCGAGCA
TTTGTTTCGCTTCAAAATAAAGTCAAAGTTTGAGATAAAATGAATTAAAC
AGTTAACGAGGCTAGCCATCGAGGGAGTGACCTAAAAAGACTCAAAAATA
TGCAACCAATTATACATAGTCCCTTTTCAAAGTACATTGAAGTAAACATA
TGATTAATTTATTACAGCAAAAAGCTTCTGCAAATTGAACAATTTCATTG
GAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGTCAAAACT
GCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTGAATTGGA
CCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGAGCATCTA
CAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACACAATTCG
CTTACTTATTCACTTGACACGTGTGACTACAGTATGTATTTAACCGATTT
AACAGGCCCTTCTGCATATCAATATTTGTCAATTTGGCAGAAAAGTCTTC
TTTTTTCATTTACATTCTTCATTTTTTCAAAGTCTATTTCAGCCTAGACA
GTGTCTTACTTAGTCCCATTATACCAAGAGAAATTAACTCCTGGTCGTGA
ACTTTAAAGAAGATACGAAGACAGCTTAGCTATAAAGGCTCAATCAAACA
TATTCCTTAAATTTTCTTTGTTAGAAGAAGCACAAAAGCTGGTTGGGCTG
TATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATTCATGGCGGCTT
CCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGGGACCGTTACTG
GAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAGTGAATTTCTAT
AATCAATTTGAACTGACCGGATTAATCGATTGTACCATCATTCTAAAAAG
GTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGGTTGTCAAATAC
CATCAGGTAAGACATTGGAACCTAGTCTCTCCTGAAAAGGCTTGATTTTT
ATAACCATTCAACATTTTAACGTTGAAAGCCTAATTGAAAGGGACGTTCT
GGAGTTTTTATAAGATACTTCAGTAATTGGTCATTTGAAGTAATAAAAAT
GACGCATTCTTTAGAAAAAGCAATAAAATTGTTGTATTACTGGTTAACGA
CCAACCAAATCAAGAAAGAGCTTGTAAAAACTCCAGCTTGTCCCAATTGA
AAATGTTAAAACGCGTGGACGCATGCGCGCTACGTAGTTTGCATAATAAC
CATGATTTGATGATTTGACTAAGTGACGGTTCTTCATGGGTTTTAGATTT
AGTTTTATGACAGAGCGTTTTTTATCCATACTCCTTATAAAGGAAATGGA
GATAAAAATAAATCTTTTTGTAACAAGTTTCCAATACTTTTTTTTTTTAG
TTACGCCTACTCCTACGCCAAGTCTATAAGCACCTGCTCCACGCCAAATT
TATAAGCACCTGCTCCACGGCAAGTCAATAAGCACCTGCTCCACGCCAAA
TTTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCACGCCA
AGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGGTCCACGC
CAAGTCAATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCAC
GCCAAGTCTATAAGCACGTGCTCCACGCCAAGTCTATAAGCACCTGCTCC
ACGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGGT
CCACGCCAAGTCAATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTG
CTCCTGGCCAAGTCAATAAGCACCTGCTCCACGCCAAGTCAATAAGCATC
TGCTCCACGCCGACTCAATAAGCACCTGGTCCACGTCAAGTCAATAAGCA
GTGCAATAAAAGCTGTGCGCTCCATGGGGATCATCATTGCTGTATACTGT
TTTGAGCACATAGATTTTAGCAGGGTTGACAGTAAGATAGAATTAATCCC
GCCAGTGGCTTCTTGGGAAAATTTCCTATTCTGGGATAGAGAAATAATTG
AACCAGTGCTTGCCACACAACAAAGCAGTATCGTGTTTCTGAAGTTACTT
GATTCTCAATTAAGCTTGGGAAAATACAATTTATGCTGGCAAGTTCTTAA
CCATGCTAACAATATAAAAACTCCCAAGATGAACTGTTAAATGGCAGGAC
CGAGTTGAAGTCGTGCCCAGGCTCCTAAATCGTGGTTGATAACTATTGTG
AGATTTTAAACATTTTCGAGAAATTTCACCAAAAAAACTTTACAAATTAC
TTGAAAATTTACCTGTAACTATTTATTCCCAATAGCTAATAGGGTATCAA
TATTTTTTATAATAAATCTTTGTTTTATTTTAATTCTCCTTAAAACTATA
ACACGTACCGTAACTGTCTAAAATTTCTCAAATCTTATTTGTTACTGAAT
CTTTAGTTTTTAATTTTTAGTTCGTTCTTTGTTTTTGTTTTTGTGTGTCG
TTATGATTATACATAACTAACATTGCACGTCGTGAACGATGTATTAGACC
CGGGGGAGGCGAATACTAGGTTTGTGAGATGACAGGTATGTCCGAGCCAA
AGTTTGAAAATCGACTTTTAGATACACTGAATTTCAAAAATTTTGTTGCT
AAAATTGCTAACTTTAGAGAGACTACTTCACCAAAGTTTCAGCCAAAATT
TTCAAATTTTAGTCCAAATTTCAAGAATTTATGACCATTTATGAGTCGAT
TTTTGATTCTCGTAATTTTGGAAGGGACTCAGTTTACTTTTAACGGTTTT
AGTATCCCTTTGAGGGACTTTCGAGGGTGTGAAAAAGGGACCCTTCATGG
TTCGCAAATACCCGGCATCCATTTTGCCTAAGCACCCCCCTTCCCGGGTA
TTAGGTTACATATGATCATTTAACGAAGCAAAAATACCAAATTAATATTA
TTCCATTATTGTATTATTTTAGTATTTGAAAGATATATTAACGGTGAATC
TTCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012249XLOC_012249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021824-exon-sc0000395-1575043694:124824..125181TCONS_00021824-exon-sc0000395-1575043694:124824..125181Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1575043694:122925..123054TCONS_00021824-exon-sc0000395-1575043694:122925..123054Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1575043694:122151..122414TCONS_00021824-exon-sc0000395-1575043694:122151..122414Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1575043694:121626..121904TCONS_00021824-exon-sc0000395-1575043694:121626..121904Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1575043694:119576..121181TCONS_00021824-exon-sc0000395-1575043694:119576..121181Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1510915933:124824..125181TCONS_00021824-exon-sc0000395-1510915933:124824..125181Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1510915933:122925..123054TCONS_00021824-exon-sc0000395-1510915933:122925..123054Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1510915933:122151..122414TCONS_00021824-exon-sc0000395-1510915933:122151..122414Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1510915933:121626..121904TCONS_00021824-exon-sc0000395-1510915933:121626..121904Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1510915933:119576..121181TCONS_00021824-exon-sc0000395-1510915933:119576..121181Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1491911889:124824..125181TCONS_00021824-exon-sc0000395-1491911889:124824..125181Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1491911889:122925..123054TCONS_00021824-exon-sc0000395-1491911889:122925..123054Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1491911889:122151..122414TCONS_00021824-exon-sc0000395-1491911889:122151..122414Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1491911889:121626..121904TCONS_00021824-exon-sc0000395-1491911889:121626..121904Clytia hemisphaericaexon
TCONS_00021824-exon-sc0000395-1491911889:119576..121181TCONS_00021824-exon-sc0000395-1491911889:119576..121181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:119576..125181 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.026615	0.0259538	0	0	0	0.311382	0.239524	0.22424	0.234385	0.257311	0.0269645	0.0652589	2.95674	0.000469129	1.08157e-05	0.146532	0.37264	1.63846e-06	0.719492	4.04958	0.704841	0.699775	1.40836	1.53888	0.000142616	8.82324e-07	0.493326	0.352422	0.147703	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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