TCONS_00021792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021792
Unique NameTCONS_00021792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021792 ID=TCONS_00021792|Name=TCONS_00021792|organism=Clytia hemisphaerica|type=transcript|length=420bp
GGATTGAATACCTGATATTATCATCAATATCAGAAATCATCAGAAGAAAC
AAAATTGGCCCAAGTACTGTTCCTTGAGGTACTCCTGATATGACAGGGGC
ACTTTTGGATTTGAAACCATTTACAACAACAGATTGTTTTCTGCCTTTCA
AAAACGATTCAATCCATCGCAATAGCTTTCCTTTGATCCCGAGCANNgtc
attaaaaatgttattcTCTTCTAGATaattaacaatgttttttcgCACAA
TCTTTTCAAAGGTTTTCATTATGTGCGAGGTTAGTGACACTGGTCGATAA
TTTTGGGCTTCACCTTGTTGGTCCCCACCTTTGTAAATAGGAATGATATG
ACTGTCTTTGAAGAGATGTGGTGTTTCCCCGTTATCAAAACACTCTCTCC
AGATTGAACAAAAAGGAGTT
Run BLAST on NCBI

transcript from alignment at sc0000394:227930..228349

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021792 ID=TCONS_00021792|Name=TCONS_00021792|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0000394:227930..228349 (Clytia hemisphaerica)
AACTCCTTTTTGTTCAATCTGGAGAGAGTGTTTTGATAACGGGGAAACAC
CACATCTCTTCAAAGACAGTCATATCATTCCTATTTACAAAGGTGGGGAC
CAACAAGGTGAAGCCCAAAATTATCGACCAGTGTCACTAACCTCGCACAT
AATGAAAACCTTTGAAAAGATTGTGcgaaaaaacattgttaattATCTAG
AAGAgaataacatttttaatgacNNTGCTCGGGATCAAAGGAAAGCTATT
GCGATGGATTGAATCGTTTTTGAAAGGCAGAAAACAATCTGTTGTTGTAA
ATGGTTTCAAATCCAAAAGTGCCCCTGTCATATCAGGAGTACCTCAAGGA
ACAGTACTTGGGCCAATTTTGTTTCTTCTGATGATTTCTGATATTGATGA
TAATATCAGGTATTCAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012231XLOC_012231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021792-exon-sc0000394-1491911889:227930..228349TCONS_00021792-exon-sc0000394-1491911889:227930..228349Clytia hemisphaericaexon
TCONS_00021792-exon-sc0000394-1510915933:227930..228349TCONS_00021792-exon-sc0000394-1510915933:227930..228349Clytia hemisphaericaexon
TCONS_00021792-exon-sc0000394-1575043694:227930..228349TCONS_00021792-exon-sc0000394-1575043694:227930..228349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:227930..228349 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4862	1.60735	1.4669	4.04401	2.30913	3.17173	2.70733	4.81777	2.66348	4.87382	1.19434	1.97974	2.26376	1.20674	0.885392	0.439489	0	0.320741	1.42369	0.215008	1.75684	2.56291	0	0	1.53699	2.91546	1.78137	0.984919	1.73774	2.15084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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