TCONS_00021774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021774
Unique NameTCONS_00021774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021774 ID=TCONS_00021774|Name=TCONS_00021774|organism=Clytia hemisphaerica|type=transcript|length=290bp
TGGGGAAGAAGGCCTTTGAAATATTAGGAGAGCAACCAGATAAGGACAGT
CCAAAATATAAAGAATTCATTCAAAATAACTTGGCACAATGGGCTCCGCC
AATCTTCACATCTTACATTATTGAAACAATGCCACCTTGTGGACTGCATC
TCATTTTGGCAATTCATCGTTATTTATGGACGTATCTCTACCATATCATA
AGCAAGCGTGGACAAGAAGATCAAATTACTACAGCTTTACGACACATTCA
ATTGGATTATTTAGCTTATCAAATTGAATGCTATCACAAG
Run BLAST on NCBI

transcript from alignment at sc0000394:36871..37833-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021774 ID=TCONS_00021774|Name=TCONS_00021774|organism=Clytia hemisphaerica|type=transcript|length=963bp|location=Sequence derived from alignment at sc0000394:36871..37833- (Clytia hemisphaerica)
TGGGGAAGAAGGCCTTTGAAATATTAGGAGAGCAACCAGATAAGGACAGT
CCAAAATATAAAGAATTCATTCAAAATAACTTGGCACAATGGGTATGACA
TATTAGCTCTTTTAAAAAATTTGTAGTTACTTGACAAACGTTTTCCTCAT
TATTTTTTTGGGAACTTAAAGGTACCTTTTAAGGAGTACTAATTTTGGCG
AACGGCTGATGCAAAAATTTTTTTTTATTTTGGTGGGAACTTATTTTGGC
GAATGACAGCGTAAATATGCTATATATACTTTGCCTTATTTGGAGCAATT
TTGTTGATTTTTAAGCAAAACAGCAAAAGAATTCATTTTGGCAAGAACTA
ATTTTGGCGAACCAGGATTTATTTTTATTTTGGCGAGAACTTAATTTGGC
AAATGACCTAAAAAATTAATTTTGGTGGGAACTAAATTTGGCCAATTTCA
ATTTTTCTCGCCATTTTCGCTAAAATTAGTTACCACCAAAAAAAGTTCCC
TTAAGGTACATGGCTAATTAACTTTTTAGAACAATCATTAATTATTTGAT
TTAGTAAACATATACTTTATGTACGATGAAGTTGTATAACTTTCTGAAAC
ATTGTAATTTAAGTAACCAATCAGAAAGCTCAATTTTGCAATTTTATAAG
AAACAACGACATTTTCACAATTTAGATCAACCAAAATTTTAAAAGAATAA
TTTGGAAGTTGCATAGTTCAGCAAAATGCTTTTATTTAGTGATTTTATTT
GGTATTAAATTTTAGGCTCCGCCAATCTTCACATCTTACATTATTGAAAC
AATGCCACCTTGTGGACTGCATCTCATTTTGGCAATTCATCGTTATTTAT
GGACGTATCTCTACCATATCATAAGCAAGCGTGGACAAGAAGATCAAATT
ACTACAGCTTTACGACACATTCAATTGGATTATTTAGCTTATCAAATTGA
ATGCTATCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012217XLOC_012217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021774-exon-sc0000394-1575043694:37742..37833TCONS_00021774-exon-sc0000394-1575043694:37742..37833Clytia hemisphaericaexon
TCONS_00021774-exon-sc0000394-1575043694:36871..37068TCONS_00021774-exon-sc0000394-1575043694:36871..37068Clytia hemisphaericaexon
TCONS_00021774-exon-sc0000394-1510915933:37742..37833TCONS_00021774-exon-sc0000394-1510915933:37742..37833Clytia hemisphaericaexon
TCONS_00021774-exon-sc0000394-1510915933:36871..37068TCONS_00021774-exon-sc0000394-1510915933:36871..37068Clytia hemisphaericaexon
TCONS_00021774-exon-sc0000394-1491911889:37742..37833TCONS_00021774-exon-sc0000394-1491911889:37742..37833Clytia hemisphaericaexon
TCONS_00021774-exon-sc0000394-1491911889:36871..37068TCONS_00021774-exon-sc0000394-1491911889:36871..37068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:36871..37833 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.301295	0	0	0	0.335653	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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