TCONS_00021741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021741
Unique NameTCONS_00021741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021741 ID=TCONS_00021741|Name=TCONS_00021741|organism=Clytia hemisphaerica|type=transcript|length=519bp
TGAATTCCTCCAGTTTTGGATGTCGAGACATAAAATCACAATCACTGCTA
TCCTTTCCGGGGCGATATTTGACTTTAAAGTTAAAATCAGCCAACTCTCC
AACCCATCGTATACCAGTTGCATTCAACTTTGCTGTTGTCAAAACATATG
ACAAGGGGTTGTTATCTGAAAACACTGTGAATGAAGGACTGTAATACAAA
TAGGGACGGAATTTGTCGCATACAGACCATTTCAAAGCAAGGAACTCCAA
CTTTCCACTATGTAACTTATAATTCTTTTCTGATGGTGACAAGCATCTTG
ATGCATAGGCAATCACTTTCAGCAACAATTGGTCATTCTCCTGATACAAC
ACTGATCCCAATCCATCCTCGCTGGCATCACAATGAAGGACAAAGGGCTT
TTCAAAATCAGGATATGCCATTACAACTGGTGAAACCAAATATTCCAGCA
ATTTCAATAACCGACTCTGTAACTCTTCTGACCAGATAACCTTCTCATTA
GGAGATTTGTGTCCTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00021741-protein

>TCONS_00021741-protein ID=TCONS_00021741-protein|Name=TCONS_00021741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
KGHKSPNEKVIWSEELQSRLLKLLEYLVSPVVMAYPDFEKPFVLHCDASE
DGLGSVLYQENDQLLLKVIAYASRCLSPSEKNYKLHSGKLEFLALKWSVC
DKFRPYLYYSPSFTVFSDNNPLSYVLTTAKLNATGIRWVGELADFNFKVK
YRPGKDSSDCDFMSRHPKLEEF
Run BLAST on NCBI

transcript from alignment at sc0000393:240215..240733

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021741 ID=TCONS_00021741|Name=TCONS_00021741|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000393:240215..240733 (Clytia hemisphaerica)
GTAAAGGACACAAATCTCCTAATGAGAAGGTTATCTGGTCAGAAGAGTTA
CAGAGTCGGTTATTGAAATTGCTGGAATATTTGGTTTCACCAGTTGTAAT
GGCATATCCTGATTTTGAAAAGCCCTTTGTCCTTCATTGTGATGCCAGCG
AGGATGGATTGGGATCAGTGTTGTATCAGGAGAATGACCAATTGTTGCTG
AAAGTGATTGCCTATGCATCAAGATGCTTGTCACCATCAGAAAAGAATTA
TAAGTTACATAGTGGAAAGTTGGAGTTCCTTGCTTTGAAATGGTCTGTAT
GCGACAAATTCCGTCCCTATTTGTATTACAGTCCTTCATTCACAGTGTTT
TCAGATAACAACCCCTTGTCATATGTTTTGACAACAGCAAAGTTGAATGC
AACTGGTATACGATGGGTTGGAGAGTTGGCTGATTTTAACTTTAAAGTCA
AATATCGCCCCGGAAAGGATAGCAGTGATTGTGATTTTATGTCTCGACAT
CCAAAACTGGAGGAATTCA

Coding sequence (CDS) from alignment at sc0000393:240215..240733

>TCONS_00021741 ID=TCONS_00021741|Name=TCONS_00021741|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000393:240215..240733 (Clytia hemisphaerica)
AAAGGACACAAATCTCCTAATGAGAAGGTTATCTGGTCAGAAGAGTTACA
GAGTCGGTTATTGAAATTGCTGGAATATTTGGTTTCACCAGTTGTAATGG
CATATCCTGATTTTGAAAAGCCCTTTGTCCTTCATTGTGATGCCAGCGAG
GATGGATTGGGATCAGTGTTGTATCAGGAGAATGACCAATTGTTGCTGAA
AGTGATTGCCTATGCATCAAGATGCTTGTCACCATCAGAAAAGAATTATA
AGTTACATAGTGGAAAGTTGGAGTTCCTTGCTTTGAAATGGTCTGTATGC
GACAAATTCCGTCCCTATTTGTATTACAGTCCTTCATTCACAGTGTTTTC
AGATAACAACCCCTTGTCATATGTTTTGACAACAGCAAAGTTGAATGCAA
CTGGTATACGATGGGTTGGAGAGTTGGCTGATTTTAACTTTAAAGTCAAA
TATCGCCCCGGAAAGGATAGCAGTGATTGTGATTTTATGTCTCGACATCC
AAAACTGGAGGAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012202XLOC_012202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021741-proteinTCONS_00021741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021741-exon-sc0000393-1491911889:240215..240733TCONS_00021741-exon-sc0000393-1491911889:240215..240733Clytia hemisphaericaexon
TCONS_00021741-exon-sc0000393-1510915933:240215..240733TCONS_00021741-exon-sc0000393-1510915933:240215..240733Clytia hemisphaericaexon
TCONS_00021741-exon-sc0000393-1575043694:240215..240733TCONS_00021741-exon-sc0000393-1575043694:240215..240733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:240215..240733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14444	3.12484	0.907058	0.380321	0.154335	0.487829	0.588545	1.10198	0.4822	0.119457	0	0.457316	0.68502	0.395222	4.09407	5.1607	4.72521	5.63571	5.10959	3.43724	4.3154	3.72406	3.41171	3.57893	0	0	0.470778	0.669902	1.14322	1.03534
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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