TCONS_00021703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021703
Unique NameTCONS_00021703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021703 ID=TCONS_00021703|Name=TCONS_00021703|organism=Clytia hemisphaerica|type=transcript|length=412bp
ctaatCGCGGTTATAGATAACGACACACTGTATTTTTTTTAGAGAATTTG
GTTAAATTCAACATGGAGGACGGTGGATTCAACTTTGTCCCTGCGAGCCT
CAAAATCAAAGAGTATGAATGTATTGTGTGTTCGCATCTATTAAACGAAG
CTATGGAACTTCCTTGTACTCACATGGCCTGTCAATCATGTCTGTGGGCG
TGGCACCAAAAACCAGAAGCCAACAAATATACAGACGACACAACAGAAGA
AGAAGCATATGGATGTCCAGAATGCAAAGCTTCATACACCATCGCTCAGG
CACGACGCTCTGCAACAGCTGATCGATTGATTTTGAATACAATGGAAGTG
AAATGCATCATGTACATTCACGGTTGTCCTTGGACTGGTTTGATCAAAGA
CTACCATACCTC
Run BLAST on NCBI

transcript from alignment at sc0000393:172204..175886+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021703 ID=TCONS_00021703|Name=TCONS_00021703|organism=Clytia hemisphaerica|type=transcript|length=3683bp|location=Sequence derived from alignment at sc0000393:172204..175886+ (Clytia hemisphaerica)
ctaatCGCGGTTATAGATAACGGTAAGGGTTGATTTTGAGGGCTAACCTA
TGAAAAAATCTCTATGCttgaatacacccctgtgtcactgacccgctggg
accccagccctcCTGGAtagtttggcaaaaatttcgtccccggtaggaaa
ataccctgggattttagccccactgggagATTGACTTATacttcatcccc
actcgaaataaaatatttaaaaattgcaccccaaaactatccccactgga
ttttttaacctttgaacaatataatttctatccccattgggatttcaata
ggaatttttatccccactgaggaaaaaagttccactggggctgtgagaca
ggggtatcttAAATGACTGTAAAATTAACTTGAGTTTAAATTTGGTTTGA
CTCTTTTTGCAACTTTTTAGATCAGTACaagtctttttataagaatggac
TATTCTCATTACATCgaaagatattcttaactttttttggggaaatcatt
ttaaaatattttgatatttgataGGTTAATCTTATGTTAGGATCTAAAAA
ACTAAATCTAACATGTaatacatttttcaaaagtcttgAGCATTACAGGG
AGAAacactttctttttataagaacctgtAAAATTTTGCAGAggcttggc
tgttcttattttttgacactttgagcCTCTGATTGTTCTTATCCTATGTT
CTTATTTATAATTCGTGATTGAGATATTTTAGGTGTTATACCCAATTTCT
ATATACCCTAAATTGTTTGGCATTGAGTatcgttcttaattttttttgtt
cttattttttggcgatttcgagcctcgttgttcttataaaattgttctta
taaaagtagGCAATTCATggttgaaaatgctctaaaaatgcaGTAAGATT
TAATGGGTTTATaggattattttttttatacaaaatctaTTCCGCTTTCT
TCCAGACACACTGTATTTTTTTTAGAGAATTTGGTTAAATTCAACATGGA
GGACGGTGGATTCAACTTTGTCCCTGCGAGCCTCAAAATCAAAGAGTATG
AATGTATTGTGTGTTCGCATCTATTAAACGAAGCTATGGAACTTCCTTGT
ACTCACATGGCCTGTCAATCATGTCTGTGGGCGTGGCACCAAAAACCAGA
AGCCAAGTGAGAATACttaaattttcgtatttttcatAATTACATGCAAA
ATATTTggagccttaggatgttcttaactttttgaggttTGGGcctaaaa
aatattcttaacatgttcttatatattttccGCACCATTTTGtgtgtatt
tttgtccattttccttaaAATTAGTATGTTTTGGAGTCCgcagagcctta
aaatgttcttaacttgttcttgatatttttgtcatcaaagctttatgttc
ttttatagtttgttcttataaaataaagtgtACTTTATAAGAAGAATACT
TTGCTTCAACTTCAATGTCATAGTAGATATCATCGATAGGATCTGCACGG
AGATAAAGCTTTATTATTAGTGTTGTACAATTTATAGATATCATTGTCTC
AAACACTTTATAAGACTTACAAAGTTTAGTCAAGTGATGCGAAAAAGATG
GGACTTTTGATAAACCGAAATACGGTGCATGCTACGTGGAAACAAACTTT
CATCGGTGGCAGCTTATCTCCAAAACTTGGAGCATCATTATCTATGCTAT
CACAGATTTCACTTTTAGACTAAGATTCTTtggtaaaatttaaaaaactc
tACAAAGAATCATTATTTATTATCATTTCAGCAAATATACAGACGACACA
ACAGAAGAAGAAGCATATGGATGTCCAGAATGCAAAGCTTCATACACCAT
CGCTCAGGTTTGctgatttcttttcaattaGAATATTTCAAACGTTTTAC
TTTTCAAACGTTATACTGCCAAACATTTTTCGGTCGCAGAAACCATAAGG
acacccttgtgtcacagacccggtgggaccccagttccactggaaaattt
agcaagAATTCCATTCCTGGAAGGAAAAATaccttagaatttcagcccca
ctgggaaattgactttgatttcatccccattcgaaaNATATTTTTGTCAt
caaagctttatgttcttttatagtttgttcttataaaataaagtgtACTT
TATAAGAAGAATACTTTGCTTCAACTTTCAATGTCATAGTAGATATCATC
GATAGGATCTGCACGGAGATAAAGCTTTATTATTAGTGTTGTACAATTTA
TAGATATCATTGTCTCAAACACTTTATAAGACTTACAAAGTTTAGTCAAG
TGATGCGAAAAAGATGGGACTTTTGATAAACCGAAATACGGTGCATGCTA
CGTGGAAACAAACTTTCATCGGTGACAGCTCATCTCCAAAACTTGGAGCA
TCATTATCTATGCTATCACAGATTTCACTTTTAGACTAAGATTCTttggt
aaaattttaaaaactctaCAAAGAATCATTATTTATTATCATTTCAGCAA
ATATACAGACGACACAACAGAAGAAGAAGCATATGGATGTCCAGAATGCA
AAGCTTCATACACCATCGCTCAGGTTTGctgatttcttttcaattaGAAT
ATTTCAAACGTTTTACTTTTCAAACGTTATACTGCCAAACATTTTTCGGT
CGCAGAAACCATAAGGacacccttgtgtcacagacccggtgggaccccag
ttccactggaaaatttagcaagAATTCCATTCCTGGAAGGAAAAATacct
tagaatttcagccccactgggaaattgactttgatttcatccccattcga
aattcaatgttcaaaaattgcactccaaaaccatcctcactggatttttt
agccttggaacaatagaatttccatcctcattgggatttcaataggcaTT
TTTATCTGCGCTCTGGGAAAAAGTTCTACTGGGCCTGTGAGACATGGGTG
TATAAGAAGTTGTAAAACAGCTCCTTATTGTCCTTACTTGTACAGTCAGT
GATAGAGGTATTCGACCTCGATTTTAGGCACGACGCTCTGCAACAGCTGA
TCGATTGATTTTGAATACAATGGAAGTGAAATGCATCATGTACATTCACG
GTTGTCCTTGGACTGGTTTGATCAAAGACTACCATGtaaaatttttgtgt
ttttcttccGGGGGGGGGGTGTACTTGGGCAAGATTGGGGTACGGGGATG
TGCCGAATGGTACCTTTTTGGGGGAACTCGGgaagaaaatgtggaaaact
ttggaATTTCATCTCCCTTTAGGATCGacctttttcgaaaattttgacaa
aacttttcaaaagaaCAAGTGTCCAACAACTTCAGCGGCACACCCCTGTC
GGTCGGCAAaagtagtaccccccccgggatcaTTTCTTTCGTCTGACTCT
GGTGATCTTTTGGATCTTTTAAATTtccatttccagaaaaatttaaaaaa
tacataTTTCTTTATTTCTGGACGAAAAGGCCTGTTTATGACGTATTTAA
ACGTATCGgttaaattcatgatattcatgacgtgatgttttctacggaaa
taccccggttttagccagtagtggcaaatttaaactagacaaaagttgta
tagaATTtgccggggtatttccgtagaaaacataaCGTCATGAATATAAT
GAATCGGTTCATTATTTTTCTCCCATAGACCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012177XLOC_012177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021703-exon-sc0000393-1491911889:172204..172225TCONS_00021703-exon-sc0000393-1491911889:172204..172225Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1510915933:172204..172225TCONS_00021703-exon-sc0000393-1510915933:172204..172225Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1575043694:172204..172225TCONS_00021703-exon-sc0000393-1575043694:172204..172225Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1491911889:173159..173359TCONS_00021703-exon-sc0000393-1491911889:173159..173359Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1510915933:173159..173359TCONS_00021703-exon-sc0000393-1510915933:173159..173359Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1575043694:173159..173359TCONS_00021703-exon-sc0000393-1575043694:173159..173359Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1491911889:174701..174776TCONS_00021703-exon-sc0000393-1491911889:174701..174776Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1510915933:174701..174776TCONS_00021703-exon-sc0000393-1510915933:174701..174776Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1575043694:174701..174776TCONS_00021703-exon-sc0000393-1575043694:174701..174776Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1491911889:175231..175338TCONS_00021703-exon-sc0000393-1491911889:175231..175338Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1510915933:175231..175338TCONS_00021703-exon-sc0000393-1510915933:175231..175338Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1575043694:175231..175338TCONS_00021703-exon-sc0000393-1575043694:175231..175338Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1491911889:175882..175886TCONS_00021703-exon-sc0000393-1491911889:175882..175886Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1510915933:175882..175886TCONS_00021703-exon-sc0000393-1510915933:175882..175886Clytia hemisphaericaexon
TCONS_00021703-exon-sc0000393-1575043694:175882..175886TCONS_00021703-exon-sc0000393-1575043694:175882..175886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:172204..175886 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0977	11.2481	18.3039	20.3275	1.53194	1.95552	8.87529	7.46753	6.70092	6.47706	4.42656	4.77215	7.26451	6.5786	2.97716	3.08845	21.7131	32.6096	11.5184	12.8309	10.5609	12.363	12.7244	12.9347	6.37975	6.19617	4.91263	2.94113	5.33439	7.60887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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