TCONS_00021689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021689
Unique NameTCONS_00021689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021689 ID=TCONS_00021689|Name=TCONS_00021689|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CTTTCTTCCCGTAACATTGTCTCAGTGGGaatgaagaaataaaattagAC
TTGATTTATTGTCAAAAACTAGCTTTTACTTTCTTACAGATCTACACTAT
CCTATATCATGGTTCTATCCCTGAACGTACAGAACTACGTCGAAAAATGA
TGCGAATCAAGAGATACAGCCATGGTTTTGTTAGTCTTCCTGTCATTATA
TCCTCATACGAAATCCTCATGAGGGACAGACAGCTCTTAGAAACATACAA
TATTGAATGGAAATTTCTGATCGTAGATGAAGGACACAGGATAAAGAATC
TGAATTGTAGATTAATCAAGGAGCTGAAGCTTTATAAAACAGCAAACCGC
CTACTTTTAACTGGTACTCCACTGCAAAACAATTTATCAGAACTGTGGTC
CCTGCTCAACTTCTTACTTCCTGATATCTTTGACGACTTGAACAGTTTCC
AAACATGGTTTGATTTCGGTGCTATCACAGACGGTGGAGAAGACAATGAA
AAATTGATCgaacaagaaaataaagacaGTGTTTTGCAGACTCTCCACTC
CATTTTGACACCATTTCTTCTGCGTCGGTTAAAAACAGATGTCGACTTGA
CCATTCCGCCGAAGAAAGAAGTCTACGTTTACGCTCCATTGACAGAGAAA
CAACAAGTTTTTTACAGAACTACGCTTGATCGCACCATCATGGATATGTT
AGAGAAGAACAAGAAAAAACAGGAAGAACCTGTAGAATACACAGCATCCG
GGCGCGTGAAAAGGAAAACAGCTTCTAACATCACCTACAAAGAAGAGGAC
GATTCGCAAGACATTGACATCGATCTTCTCTTCGAACAAATGGAAGAGCA
AGAGAGAAAGAAACAAGAGCAAGAGTTGTTGatgaaacaaaaactaaaac
CCAAATCTCTGGTCAACATCAAAATGCAGAACACGATGATGCAGCTCAGG
AAATGTTGTAACCATCCATACCTCTTGGAATATCCTTTTAACCCTGACAA
CAACGAGTTGGTCATCAATGAGGATCTGGTCAAAGTCTCTGGCAAAATGT
TGGTTCTTGATCAAATGTTACCTGCTTTGAGAAAGCGTGGACATAAGgtt
ttgattttctcacaaATGACAACAATGTTGGATATCATAGGTGATTATTG
TGGAATTCGTGGTTATAAATACTCCAGGATTGATGGTACCATGGGCATCA
AAGATCGACAACAAATGATTGAAGATTTTGCAGCTGATGAAGaaaccttt
ttgtttttgttgagtACACGTGCTGGAGGTCTGGGN
Run BLAST on NCBI

transcript from alignment at sc0000393:74594..83698+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021689 ID=TCONS_00021689|Name=TCONS_00021689|organism=Clytia hemisphaerica|type=transcript|length=9105bp|location=Sequence derived from alignment at sc0000393:74594..83698+ (Clytia hemisphaerica)
CTTTCTTCCCGTAACATTGTCTCAGTGGGaatgaagaaataaaattagAC
TTGATTTATTGTCAAAAACTAGCTTTTACTTTCTTACAGATCTACACTAT
CCTATATCATGGTTCTATCCCTGAACGTACAGAACTACGTCGAAAAATGA
TGCGAATCAAGAGATACAGCCATGGTTTTGTTAGTCTTCCTGTCATTATA
TCCTCATACGAAATCCTCATGAGGGACAGACAGCTCTTAGAAACATACAA
TATTGAATGGAAATTTCTGATCGTAGATGAAGGACACAGGATAAAGAATC
TGAATTGTAGATTAATCAAGTAAGATAAATTTATTCAGTGCATTCAAAAC
TGCTTGGCCTACAATCtgatattgagaattttggtcaTTGTctcattttc
gaaatttgaagtttGGGCAAGAAAGTTGCTTTTGGGCGATCGAATATTAC
AAATTGGGAGGGTTTTAtaggcttccaggctatattttgagccttttttt
atcattcttgaacttttggatcatcagatcctaaggtcgtaagtcttaag
tctagcgttaaaactctactatTCCAATCTAAGTCTAGAGAGCTTACATT
TACAAATCGTTTATGGGCTTTTTTCTAAATATGACGACCTTGGTTGTATG
TGAAACGAGTCTGGTACACAACATTGATAATTGTGAAATAGAAATTGTCT
GTCAttgtttaaagggacataacagtacttgcgaaatttgtaaacaaact
gtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaa
atcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggacacgtgattttaattgt
tctctttaatgacacgtggttcacgcaatgtttacattttactactttta
tgtccctttaaagtaCAAGATCCAAACCTTACATtgttgaaaaaacattt
taggAATCGTTTTTTGATATTACTTGTTGGACATAAGATAAAGAATCTGA
CTACTAACCAAGCGAAATGTATGTAAATGGATAAGTAGTAATATTAAAAA
TCGCTtgtcaaaatgtttttctctctTGTAAGGGTTGTATCTTCGATTTT
ACAATAAGTAGCTGACAATGAATGTAAAAGACTTTCTGGTAGTTGGTTTG
ATTATATTTCTTGCTGATATCTCTAAACATTTTCATTCCATTATAGGGAG
CTGAAGCTTTATAAAACAGCAAACCGCCTACTTTTAACTGGTACTCCACT
GCAAAACAATTTATCAGAACTGTGGTCCCTGCTCAACTTCTTACTTCCTG
ATATCTTTGACGACTTGAACAGGTTGGTGCACTTACTGGACTAGATTTTT
TTATCAACTCTCCATATTGGGAtgttccataaaatttccaaaCAGGGGAG
TGGACAAACCTTTTaagtcaaaacaaatttctttgaaatgtctggatacc
ccctggaaaatggcaaaatctgcgaaaatacccttggaaaaattctttgc
ATACCTtgaagtgagggtggacgaactaaaatcagtcttctaccccctgg
aaatttaagaataactttttaccccttttaaaaaatgaaatagcatggaa
tagcccatttcaTTCTACTGAATACAGAACACGTGCCTGCAATCAAACAA
ATAATCTGTTAGTAACTAGTATAGGAATAATTTCATTCTCTTGCTCATAC
TTCATAGTTTCCAAACATGGTTTGATTTCGGTGCTATCACAGACGGTGGA
GAAGACAATGAAAAATTGATCgaacaagaaaataaagacaGTGTTTTGCA
GACTCTCCACTCCGTAAGATGACAAATATATAAAATCATTCCCTGTAGCA
GGGGGGCCAACCCTTAGAATCCGTAGCATTTTTCCTGGGACTCGACTGAA
TTTGACTGGATTCGAAAGTAGATAGGAATTTGAGACTTTTTCAGGGGGCG
CAAATTAGGCCTCTTTTTATGGCTAAAAAACTGACGTGTACTACAGCAAG
TCTTATACTCAAACACACAAAAAGATATGGCCATTTAAAGTTCGAAATCC
TGTGAAATCTGTTAcgttttagacaaaatttgacgtcaaccgTACTTTAA
CTGACAGTATTTTGAACTTCAAAAGCCTTGTATTTCTTTACATGTTTGAG
TACACGACTTGTTGTAGTTTTAGGTTTTAGTTTGCTTTTTATTTAATGCG
TTAATATCACGTTATCGTGGCTACTGTACACAAGTAATGTAAATAATTTG
GTTTACAGACAGGAGAAAATGTTATTACTCAGTAAACATAACTAAGGGGT
GTGACcattgacctttatataccctggaccaagtttctcaatccaggcca
agcaaaatctttgatcggagttaaagtgataccctaatggcggcactact
caatagcggggtaatgcatcgagagcgctaggtctactttccctcgaaag
CTTTTGATGAtatagcgccgttagacgttaatttttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaattctaattattcgttttataaataggtaggtccattaaag
tattacttgttaacactgcaatggcttctttacgggtaccaattcaaaaa
agcttggcccagggatatataaaggtcagtgggtgtGACAGGCTACGGTA
CAAGTATTAAAAATTTCAACTGTTTCACATCTTTTAGATTTTGACACCAT
TTCTTCTGCGTCGGTTAAAAACAGATGTCGACTTGACCATTCCGCCGAAG
AAAGAAGTCTACGTTTACGCTCCATTGACAGAGAAACAACAAGTTTTTTA
CAGAACTACGCTTGATCGCACCATCATGGATATGTTAGAGAAGAACAAGG
TATGATTATGACGGAAATACTTTGgtattttcatgattttatttttagac
aGAAGAAGGGTGTTATTTCTCTGTGAAAATAGCTGGTAACCACCTATAAG
ATAACGTGTTATATTTGATAGGCTTTtttcttatctgatattccgatggc
ggattggcggccgcccacgctaaagctctaaagggagcgggccaatttcc
catcggagaggaatgatagtcggcctttgatgtgccgcatcctcagTCGG
GTTAACAGCCCTTGTCCGtaaaggtaaaaatatttcggttggacccgcca
atccccgaaaacgagggctgggttaccagacctcccgctgcaaaatcctt
gacgcggtcttgcaaaattctttaatctaaaccttccagatgttgaaatt
ttcccgaccttcagagctttagtgtgtcgtatgaaaatttcaccatctgg
gtgccagataagctTTTTTCATTTGAACCCACAGTAGTAGCGTCCACATT
ATTGACTTTAGAATCTCcatcattttgatgaaaacttttcaaatctACAA
ACTATTTCTTTGATTGGTCGCACATAGGATAACGCAACCTATACTTCGCT
GTATATTTAACGAGAGACTTCTCTCTGATTCAGAGCGTAAAAATCTCGCA
ATTCattatatgcaccattgcaatggcTTCCACGGAcgcaacagctgatt
ggttgaaagtgacgcattgactgattttacgtcaattacaaccaatcagc
tattgggaccgtgatgtaatgtcagacattacaatggtgcatatcatgaa
tataagaccatgttcgcacgtaacGATTCCGTTTCACTCCAAagcgaaat
gaagccattctattggttagaagtgacgtaaaacttgaatgtaaccaata
gaacggcttcatttcgtttcggaacgaAACAGAATCgttacgtgcgaaca
tggtctaaagCATTTACTTTCTTGTAGAAAAAACAGGAAGAACCTGTAGA
ATACACAGCATCCGGGCGCGTGAAAAGGAAAACAGCTTCTAACATCACCT
ACAAAGAAGAGGACGATTCGCAAGACATTGACATCGATCTTCTCTTCGAA
CAAATGGAAGAGCAAGAGAGAAAGTAGGCAATTCTTTCAATACGACTGTC
ATTAAGtgttttttgatagactggatgattCTGTAGGCAAAGAGACTGGA
GGATTCTGTGGGCAAAGACCCTCTAAGGAGGATACTGTGGGCTTAAGTGG
ACTCatcgtcatcaaaaattataataaaaaaaagttgaagctAGAACTAT
ACTCAGATTTGACTGCATTTTAAGTGGTTTACGTTAAGATTTCTCTATCG
GCAGAGCTTACTCGCAAATACTTTTTATTCTTACGACTTAGTTAGCACTA
ATTAGTAATTTCCATCTGTTTAAATCTCCATCTTCATTTCGTATGTTGAT
GAATTTGCTTTCAACTCTTGAAAGAAATTTGTAGTTTTGGGGTTTTGCTG
CTAAAAGGTCTTTTTCCATATCAGCCGATCTGAAAAATTGCGTAGCCGTT
ACAAAGGTCTGCAAGATTTTGCATGTTTCTACTGGGTgtctcaaaaattg
tttgagatTGGATTAttgagattttgagaaaaagttatgaaggaaaagaa
aaaaatcaaaaaatcattcAGTTTCCTAGAATCTCTTTTTGAATCTCAAT
TCAAACTtgtacattttctttgagacaCCCGGTACTTTGACCTCTACTTC
TTTCAACCAACAATTTCTACGGAATTATTCAACAGGAAACAAGAGCAAGA
GTTGTTGatgaaacaaaaactaaaacCCAAATCTCTGGTCAACATCAAAA
TGCAGAACACGATGATGCAGCTCAGGAAATGTTGTAACCATCCATACCTC
TTGGAATATCCTTTTAACCCTGACAACAACGAGTTGGTCATCAATGAGGA
TCTGGTCAAAGTCTCTGGCAAAATGTTGGTTCTTGATCAAATGTTACCTG
CTTTGAGAAAGCGTGGACATAAGGTTAGTTTTTTGAATGAATCATTTGTT
GACACTTTGGAGTACAGTTGACTGTAATTCGAtccgatcttcaagggact
agAAATtgtattcgaattatagaaagcttTGGAATGCAGAGAGTAATTTG
TATCACTTTCCAGCTGAGTAGACAAATATTTAGTTCGAAGTACAGAACCA
ACGATTCGAAAAATAGAGATTCGAATTGGAGAGATTTGACTGTATACCTG
AAGGCTAGAAGTGATTCGTCAACCATTCCTAAGCGAAAGATAATGACACC
TTAAAGATAAGCGTATTATTGCGAAACTAAATGTTTTCCTAATAATTCAT
GATATGCACCACTGGAGAGTCTTCTGAGAACTTTTAAAATTTTCCACCCA
TTAGGTCACTTAAACAATAGAAAAAGTGACGTATTCATGATATGCATCAT
TGCAATGTCTTCTGACATTACATCATGGacccaacagctgattggttgta
agtgacgtaaaatcagtcaatacgtcacttgaaACCAATCAGCTGCTGGG
GTCcattgaagacattgcaatggtgcatataatgaattgggtgaaagaaa
aacagaaaagttgcataatttcgtgaagtcattgcagtggtgcatataaT
GAATACAATCTAAATCTTACCACACACTAATTTCaggttttgattttctc
acaaATGACAACAATGTTGGATATCATAGGTGATTATTGTGGAATTCGTG
GTTATAAATACTCCAGGATTGATGGTACCATGGGCATCAAAGATCGACAA
CAAATGGTAATTTCTTTAGTGAAAAGCGTGCTGTAGCATCACATGGttga
aaatgaatattttgcATTGCTTTTGCAAGATCACCACACAACTTCGCATA
tgtatacattttttttataagaacaaactatataagagcgtaaggcttcg
atgaccaaaatgttaagaatatgttacgaacattttaaggcttttttgac
tctgaatttcttagggaaatggacaaaaatactcaaaattggcgaaaata
agaacatgttaagaatattcttAGGCTTACAACTCAAAAAAGTCTAAGGC
TTTAAGTCtaattttgatgttcttataaaaaaagtgtaattagCTTTAAT
CCACCTTTGCAAGCGCTTGACACGTAGGCTTTCTTTACTTTACCCtactt
tttttctcatttccacCCACAGATTGAAGATTTTGCAGCTGATGAAGaaa
cctttttgtttttgttgagtACACGTGCTGGAGGTCTGGGTTTGAATTTA
ATGATGGCTGACACTTGTATCATCTATGACAGTGACTGGGTGAGTAGANG
TTTGAATTTAATGATGGCTGACACTTGTATCATCTATGACAGTGACTGGG
TGAGTAGATATAAGTAAtgagcactgacctttatatatgcCTGGGCCAAG
TtacatccgccatctttgatcggagttttttttttgaaagtgttacCAGC
TAAGAAGCCATATTGCAGTGCTAAAAATTAACGTTAAACGGTGCTAAATC
ATAAAAAGTAtgcgaggaaaagtagacctagcgcctTCGAAGcttttaca
ccgctattgagtagtgctaccattaacCATTAGCGTGTACCAAAAAAACc
tcaaacaaagattttactTGACCGGGACTGAGAAACTtcgtccagggtat
ataaaggtcagtggcaaTAAGCGTCAGGCACAGTTTTTATTACCTTTTTT
TGCTTCAAAGCNCATGAATTGGgtgaaagaaaaacagaaaagttgcataa
tttcgtgaagtcattgcagtggtgcatataaTGAATACAATCTAAATCTT
ACCAAACACTAATTTCaggttttgattttctcacaaATGACAACAATGTT
GGATATCATAGGTGATTATTGTGGAATTCGTGGTTATAAATACTCCANTA
AATGGGTATTCTTCgccacggcatgacgtcagaactggggTACGACAGAA
CAAttactaaagattaattatgtgttttcagtaaacataatcCTTTGTGA
GTTAAtccatagtgtttgttttaccctcgaaattattaaatcttattggt
tgaaaaagatgtcacatgactttccgtTGCAAAGAATATAATGGCACCAA
GACCTTACTaaccatttttggacctaccccggtggaggtcctataaattc
acctctgtccgttcgttcgttaccagcttttctcgagattggctcattag
ttttttctggttttttgcacaaagatgtgtaactataaattctcgaatgt
gacggagcccgattttcaaaaaaaaaaatttgggggcaaatttgggccaa
aaaacggctaaaaaacgggttttttggactttgNcgacaaaaatactcaa
aattggcgaaaataagaacatgttaagaacattcttaggctTACAACTCA
AAAAAgtctaaggcttcaaaaaattttgatgttcttatcaaaaaaagtgt
aattaGCTTTAATCCACCTTTGCAAGCGCTTGACACGTAGGCTTTCTTTA
CTTTACCCtacttttttttctcatttccacCCACAGATTGAAGATTTTGC
AGCTGATGAAGaaacctttttgtttttgttgagtACACGTGCTGGAGGTC
TGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012173XLOC_012173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021689-exon-sc0000393-1491911889:74594..74912TCONS_00021689-exon-sc0000393-1491911889:74594..74912Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:74594..74912TCONS_00021689-exon-sc0000393-1510915933:74594..74912Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:74594..74912TCONS_00021689-exon-sc0000393-1575043694:74594..74912Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:75940..76065TCONS_00021689-exon-sc0000393-1491911889:75940..76065Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:75940..76065TCONS_00021689-exon-sc0000393-1510915933:75940..76065Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:75940..76065TCONS_00021689-exon-sc0000393-1575043694:75940..76065Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:76451..76556TCONS_00021689-exon-sc0000393-1491911889:76451..76556Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:76451..76556TCONS_00021689-exon-sc0000393-1510915933:76451..76556Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:76451..76556TCONS_00021689-exon-sc0000393-1575043694:76451..76556Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:78881..79042TCONS_00021689-exon-sc0000393-1491911889:78881..79042Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:78881..79042TCONS_00021689-exon-sc0000393-1510915933:78881..79042Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:78881..79042TCONS_00021689-exon-sc0000393-1575043694:78881..79042Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:80021..80166TCONS_00021689-exon-sc0000393-1491911889:80021..80166Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:80021..80166TCONS_00021689-exon-sc0000393-1510915933:80021..80166Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:80021..80166TCONS_00021689-exon-sc0000393-1575043694:80021..80166Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:80829..81066TCONS_00021689-exon-sc0000393-1491911889:80829..81066Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:80829..81066TCONS_00021689-exon-sc0000393-1510915933:80829..81066Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:80829..81066TCONS_00021689-exon-sc0000393-1575043694:80829..81066Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:81730..81849TCONS_00021689-exon-sc0000393-1491911889:81730..81849Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:81730..81849TCONS_00021689-exon-sc0000393-1510915933:81730..81849Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:81730..81849TCONS_00021689-exon-sc0000393-1575043694:81730..81849Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1491911889:83630..83698TCONS_00021689-exon-sc0000393-1491911889:83630..83698Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1510915933:83630..83698TCONS_00021689-exon-sc0000393-1510915933:83630..83698Clytia hemisphaericaexon
TCONS_00021689-exon-sc0000393-1575043694:83630..83698TCONS_00021689-exon-sc0000393-1575043694:83630..83698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:74594..83698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.62832e-05	0.40801	0	0	0	0	0	0	0.181714	0	0	0.0649933	0	0.227956	0.834009	0.980643	2.29566	0.924751	0.25909	0	0	3.79259e-08	0.48958	0	1.73701	1.75247	0.457402	0	0.68656	1.93397
Blast
[Close]
BLAST of TCONS_00021689 vs. Swiss-Prot (Human)
Match: HELLS (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 6.884e-120
Identity = 209/400 (52.25%), Postives = 290/400 (72.50%), Query Frame = 3 
Query:   90 IYTILYHGSIPERTELRRKMMRIKRYSHGFVSL-PVIISSYEILMRDRQLLETYNIEWKFLIVDEGHRIKNLNCRLIKELKLYKTANRLLLTGTPXXXXXXXXXXXXXXXXPDIFDDLNSFQTWFDFGAITDGGEDNEKLIEQENKDSVLQTLHSILTPFLLRRLKTDVDLTIPPKKEVYVYAPLTEKQQVFYRTTLDRTIMDMLEKNKKKQEEPVEYTASGRVKRKTASNITYKEEDDSQDIDIDLLFXXXXXXXXXXXXXXXXXXXXXXPKSLVNIKMQNTMMQLRKCCNHPYLLEYPFNPDNNELVINEDLVKVSGKMLVLDQMLPALRKRGHKVLIFSQMTTMLDIIGDYCGIRGYKYSRIDGTMGIKDRQQMIEDFAADEETFLFLLSTRAGGLG 1286
            I T+LYHG+  ER +L R + + K    G + + PV+I+S+EI MRDR  L+  +  WK+LIVDEGHRIKN+ CRLI+ELK +   N+LLLTGTPLQNNLSELWSLLNFLLPD+FDDL SF++WFD  ++++  ED   +I +E + +VL  LH ILTPFLLRRLK+DV L +PPK+EV VYAPL++KQ++FY   ++RTI +M   ++K   E +E + +GR KR+T  +I Y + DD  + +++ L  Q++ +  +++    +       +S VN+K+QN MM LRKCCNHPYL+EYP +P   E  I+E+LV  SGK L+LD+MLP L+KRGHKVL+FSQMT+MLDI+ DYC +R + +SR+DG+M   +R++ +  F  D E F+FL+STRAGGLG
Sbjct:  297 IPTMLYHGTQEERQKLVRNIYKRK----GTLQIHPVVITSFEIAMRDRNALQ--HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAED---IIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEK---ETIELSPTGRPKRRTRKSINYSKIDDFPN-ELEKLISQIQPEVDRERAVVEVNIPV---ESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680
The following BLAST results are available for this feature:
BLAST of TCONS_00021689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HELLS6.884e-12052.25Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
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