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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021686 ID=TCONS_00021686|Name=TCONS_00021686|organism=Clytia hemisphaerica|type=transcript|length=995bp
CTCAAAGTGATAAACCATGTGATTCAGATAAGAAATGGGTGAAACGATAG
AAAGCGTAAACcaaccaaaagaaaaagaattgatatgTACAAAATTTCCA
GCTGGTAAAGTTGAATGTACCAATGATAGCTCTACCGATAGTGAGGATGC
TCAGATAGTACCAGATGTTGACCATTCAccatcaaaacaaatcaaagatg
ATCATAAAGAGGGCGTTTCCTCACCTGAAGGAAATGTTGAAATGTATAAC
ATGAAGTGTGATGAAAAGGTTCCCACAAAAGACTGCAAGAATGAGCAGGT
CAATTTATCAAAAAACATTGTTACATCTAAGGATCATCAAGAAAAAGATT
GTGGATTAAAAAATACAGATGTTAAAGGCCAAGATTTTGAGCAACCAATA
GATTCATCTGACAAGTCCAAGGAATTGAATTCTAAAAACACTAGCAATGA
AACTTCAAACACTGATAACATTTCTTCTAAGAATTTGTTAAACGTTACAT
CAGATATAGCTAATAATTCTTCAGAAGGAATGGACAAAAAGCCTGAGGAA
ACTAGTTCAAAGCAAGGAAATGTGAATGAGGATGCTGTAAAAGCAGAACC
AAAATTTGGATTGACTGTTGAAATGATTGAGGAAGAAGAAAAGTTGAAGC
AAGAACAAGAAAAGCAGTTagatgaaatcaaaaataagGCATTGCAAGAG
CTAAACAGCACTGGCCAAAAGCAAAGGTTTGATCGTCTTCAAGTACTATT
AAGTCGTTCACAAATGTACTCTACATATATTTTGGGTCGTTTAAATTCAC
GAAGAGAAGCAGAGAAAAAGAGGCTTGAAAGGGTAGATaagaatgaaaag
aagaaaaaagagttcgaaaacaaagaaagcgacCCTAAAAATGAAACTCA
AGACAAAGAGGAAAAGGATTCGAAAGCAGATGGTGAAAGTAAATTTTCAA
GaggaaaacgaaaaagaaaatctcTTCCAAAAGATGAGCAGGTAT Run BLAST on NCBI transcript from alignment at sc0000393:67136..72948+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021686 ID=TCONS_00021686|Name=TCONS_00021686|organism=Clytia hemisphaerica|type=transcript|length=5813bp|location=Sequence derived from alignment at sc0000393:67136..72948+ (Clytia hemisphaerica)
CTCAAAGTGATAAACCATGTGGTAAACcctttattttttccctactaTAC
ATATCTGTGTGGATATGCATTTTTGTCCCAGCAGTCAAACTTTTGAAAGC
ATTAAGTTTTAAAAGGATTGTTACATATGCCAGAAACCATACATAAGGAA
AATTTGATTTCTGGAAAGTCTGGTTGAGGTTGCTTGTgcagatttcaatt
tttttaaagtcagGGAACTAGTCAAACAGGCTAgtgactccagaagtcat
gcaactttcgttgatgtcaaaccaaatgtttcattttttcgtgaactttg
aacccttgccttggaactttttttctatgtatgctaaagcgttttactaa
atgaaagcccgtgatcttagctttccagcggtatataacactgtggacac
gggctagacagCAAATTGGTAaataaaatgccgaacgttttacaacattt
tgaaaattgtttgccgacgggagaaaaaaaatttgcaactatcgaagaac
aaatgtgtctggaaacggaggaaaatgtagctattttgaggctgaaactt
tgtatgtttgtttatcagaaaaagggtgaggaattcaaaaatcacaatcg
ctaattctagttcttttattttcatatagtttctttaacttttttgcttc
tttagcatgggaatgtcccaaaaaaaagttttttcatttctgccgaaata
gattttcttttcatttggggtttctcccttcagaaaaacttattctttac
tcataagtttttgttcctccatttccagaggccccttgaaaatgggtcct
accaccttttttgactcatttcaaccttttccaagNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtggggtttctcctttcagaaaaac
ttattctttactcataagtttttgttcctccatttccagaggccccttga
aaatgggtcctaccaccttttttgactcacttcaaccttttccaagctat
tttcttcaaaaacaaaaataaaacaatgcaatgtcttcttttttcaaaaa
aagacatatctttcgttattttgataaatatactaaatattttacaaata
tttttatataattatattttaacaccatcaaagaattctccctccaaatt
tgaggtctctagctacactagaaaaagagatatgcaatatttaagaagca
tgactggaaaatttcttttttttcttttttttcttttttaacacattttt
cgaatttttccaagctattttcctaacctttttttgacattttcagtcaa
atttttgacactaaaatttgaatatctttacaaccactaatcctctggag
gcctttgacccctcattttctttctttttcaaagctctacaagataggaa
tatagattttgaaaaaaaaattaaaacttgaaaaatcttctggagttgct
aaacAGGCAAGAGTTTTAAAATCACGTCAAAAAGCCAATCTCTTCTTCTA
ATGTGCCAGTTTTCAGAAGGTGGCGTCGCCCCCgagatgatttttgattt
ttgaaatcctGCCCCTCTGAAAAGTTGATGCGGAAGGCGGGAAATTTTTT
CTACCCCTATTTTCTAAAGTAACTCTGTTCTCCCCGTATAAAAAACGCTA
CATGGAAGATCTTTCATATTTAGTATGTGTACagacaggctagctctaaa
gctcacAAGAGAACCCTCGAACGGATAAAATTACTGGCACATATTTTAAT
AATAAAACCACATTTTAGGTAAATTCAACGTGTTTTTAGtaatttcagtt
aaattaaataaatttattttagataaGTAATTGATATGGATGGTAATCTT
TAAATACTTTTATGGTCTTGTAAATACACTTGAATATCCTGCTTCAAGAT
CACCGTTTTCCCGAGGTGGACTGCGTGCGTCGCTCGCTTTCTTGACTTCA
AAATTATGTTCTCTGGATACCTTGTTAAtcttgtttaagataaaaactgc
aattatcgCTCTTTTCAGAAATTATAGACCTTtgcgcctttccatccgcc
atattgaattgtatgcaaaaattatggtggccgaattgccgtggtgaaat
tctcttaagaaagtatgcaaaacatatgcaaaaagaaagtattaaataaa
aacttgcatGCATAAtttgcattatattaaagtgtaatcttgtagaagaa
agattaaatttgcttctcttgaaaactaaaaacaattatatttactcatc
tcttagaacaagcacttcaaaagaccataacattagacagaaactcaaac
tgaaaaatcacctgcaaaggtaaaaaacaatccttattcggctgacggca
aattattctcctgggaatagagtcgccaaatgatcaaatcaaaacattga
taaagtgtgacgtcataattactgctttcagtttgcgtgttttgaaagtt
tgatgtgtgtactcCGTCTTCGTGGAATTTTTTAATGGttctttaagaac
aaattcctaaaaggcttttgttgttctgtaaatatttccttttggattaa
gaaattccatcttttattgttctaatgattataatatttatttataagat
gctttgttgtctttttaatctttgtgtaaacttgcatatgttttgcatac
atttcAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTGCATACATttcaactaaatccaaccacg
gcatttttgttcctgtatttttgcatacaattcaagatggcggacggaaa
ggcgaaaaggtctattgccgaaaacggcaatttttttaacaatgaaatgc
tgaatcagcaaaatgtgttgtccttttaagggcaaagatgtcaaaggtgt
ttgaaaatagtaaaattgcattgagaaaaaggtttttcagattaaaagtg
attttttcaatttttcgttgctcaataatatgaaaagttctaaaataata
agtcaaaagatcctgcatcgatgccgaaacacagccagaaagagataaca
aaacccctgttgtaaatttgtttacatatgactcgattttgctatctgca
tttccaacaaaagccagttgaaaacataacaaaactaaacgaggcacagt
gggcctacttattGCGAgtgtgtcaaataccacgtgtaataatttccaaa
aagagcaataattgcagtttttatcttaaacacccgactgctCGCTCGTT
CCTGCTTTCGTCTTTATGTCACAGAATGTCTTCACCTCCAGTAAGtataa
aactttatatattttttgtacaaaatgtttttcattagAGTATTATGTCA
GTACAGTGTATCAAAAAATCCTGTGGGTTGGTTTTTCTGACCTTATTATa
ctcttttttttcaatgtttaatTAGCAAGGGCAGCTTTATTGGCCCAGTT
AGCGAAAAAGGCCTTCAAATAGTGTCTGTGGTATGTGGTTTGTGGTTCGG
TTCGCCAAAAGTTTTTGCAATAACAGCGTCTTGattgttttttcaatttc
ataattcttgatagacagtgatataccttttggtaattagttcttacaaa
gtaaacaagggacgccgtacaatatgagcatattcatttttcttataagc
atttaatctataagaatcaaatcaataactcttgatagacagtgatatac
cttttggtaattagttcttacaaagtaaacaagggacggcgtacaatatg
agcatatttatttttcttataagcatatactttataagaatcaaatcaat
aactcttgataacaTTGATAAACCTTTTGgtaattaattcttacaaagta
aacaagggatggtgtGCAATATtcgagcatatttatttttcttgtaagca
tatactttataagaatcaaatcaataactcttgatagacagtgatatacc
ttttggtaattagttcttacaaagtaaacaaggtacggcgcacaatatga
gcatatttatttttcttataagcatatactttataagagtcaaatcaata
actcttgataacgTTGATAAACCTTTTGgtaattaattcttacaaagtaa
acaagggatggtgtGCAATATtcgagcatattcatttttcttgtaagcat
atactttataagaatcaaatcaataactcttgatagacagtgatatacct
tttggtaattacttcttacaaagtaaacaagggacggcgcatgCTCTCAG
GTTTTTGCTATCTTCATTGTTGATATTTTGTAATTACAGATTCAGATAAG
AAATGGGTGAAACGATAGAAAGCGTAAACcaaccaaaagaaaaagaattg
atatgTACAAAATTTCCAGCTGGTAAAGTTGAATGTACCAATGATAGCTC
TACCGATAGTGAGGATGCTCAGATAGTACCAGATGTTGACCATTCAccat
caaaacaaatcaaagatgATCATAAAGAGGGCGTTTCCTCACCTGAAGGA
AATGTTGAAATGTATAACATGAAGTGTGATGAAAAGGTTCCCACAAAAGA
CTGCAAGAATGAGCAGGTCAATTTATCAAAAAACATTGTTACATCTAAGG
ATCATCAAGAAAAAGATTGTGGATTAAAAAATACAGATGTTAAAGGCCAA
GATTTTGAGCAACCAATAGATTCATCTGACAAGTCCAAGGAATTGAATTC
TAAAAACACTAGCAATGAAACTTCAAACACTGATAACATTTCTTCTAAGA
ATTTGTTAAACGTTACATCAGATATAGCTAATAATTCTTCAGAAGGAATG
GACAAAAAGCCTGAGGAAACTAGTTCAAAGCAAGGAAATGTGAATGAGGA
TGCTGTAAAAGCAGAACCAAAATTTGGATTGACTGTTGAAATGATTGAGG
AAGAAGAAAAGTTGAAGCAAGAACAAGAAAAGCAGTTagatgaaatcaaa
aataagGTCTGTTTAAATAATTCTCTATTATTAAACATATCTAGCAAAAA
AATGCTGCAATTGAACGAGTTTTTGAAGCAATGTCTATGAATAAGGTAAA
CATTTTCGTTCACTGGAACTGAAAATTTTGTCTGAAAATAGTTGGTGGTT
AAGGGCGTTAAGTGTTATTTTAACttatattgaattttgaagcaACTTGc
aggattttgcaattttgcaattTGTTGTTGAACATTGCTGCAAGAATGGC
TTTTGGAAAGCTATTAGTTTTAATCTTAAGCCATCTTTATCTCTAGGCAT
TGCAAGAGCTAAACAGCACTGGCCAAAAGCAAAGGTTTGATCGTCTTCAA
GTACTATTAAGTCGTTCACAAATGTACTCTACATATATTTTGGGTCGTTT
AAATTCACGAAGAGAAGCAGAGAAAAAGAGGCTTGAAAGGGTAGATaaga
atgaaaagaagaaaaaagagttcgaaaacaaagaaagcgacCCTAAAAAT
GAAACTCAAGACAAAGAGGAAAAGGTAAACATTTCTTCGACGAGATTTAC
ACATACTTATCATTATCTCTGGCTTAAGTTAGTTATTTTTTCTCATTGCT
TGCCAAATGATGAGAAGAGTTGTTTTGACTTGGTAAATGACCATGTATGA
AACGATAAACACACTAATCTTCTCTCTGATGGCCaaaaatggaaacaaaa
aaattcctaGATATTACCCCATGAGTTTGTTGATAAAGAAAGATCTGCTT
CACAAATGAACAGCTTCATTGCATTCTATTAAAGGATTCGAAAGCAGATG
GTGAAAGTAAATTTTCAAGaggaaaacgaaaaagaaaatctcTTCCAAAA
GATGAGCAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021686-exon-sc0000393-1491911889:67136..67156 | TCONS_00021686-exon-sc0000393-1491911889:67136..67156 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1510915933:67136..67156 | TCONS_00021686-exon-sc0000393-1510915933:67136..67156 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1575043694:67136..67156 | TCONS_00021686-exon-sc0000393-1575043694:67136..67156 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1491911889:71425..72091 | TCONS_00021686-exon-sc0000393-1491911889:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1510915933:71425..72091 | TCONS_00021686-exon-sc0000393-1510915933:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1575043694:71425..72091 | TCONS_00021686-exon-sc0000393-1575043694:71425..72091 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1491911889:72382..72609 | TCONS_00021686-exon-sc0000393-1491911889:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1510915933:72382..72609 | TCONS_00021686-exon-sc0000393-1510915933:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1575043694:72382..72609 | TCONS_00021686-exon-sc0000393-1575043694:72382..72609 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1491911889:72870..72948 | TCONS_00021686-exon-sc0000393-1491911889:72870..72948 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1510915933:72870..72948 | TCONS_00021686-exon-sc0000393-1510915933:72870..72948 | Clytia hemisphaerica | exon |
| TCONS_00021686-exon-sc0000393-1575043694:72870..72948 | TCONS_00021686-exon-sc0000393-1575043694:72870..72948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:67136..72948 + |
Blast
The following BLAST results are available for this feature:
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