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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021664 ID=TCONS_00021664|Name=TCONS_00021664|organism=Clytia hemisphaerica|type=transcript|length=2340bp
gaaaaatttacgtttcgttcaaaatgaaaatattatttcgcgaactttcg
atattttcattggtttttcacttttttttcattttcagagagAATTTGTC
TTTAGTTTGTTTAACCAATAGAGCAGACGTCGCATATTCATTGATGTAAC
ATCAACCATATCAAAAAATGAGCATATTGCCGTATTGGAGCTTCATGATG
TTGGTGGGTATATTGACCACCTTACCTACATGCAGCGCTGCTCATTATCA
TGACGATCAACGGTTAGACGCTATCTATTGGGAAATCAAGCCGTATATTT
TCCGCAACGAACATAATGAGATTGATGGCATCATTCCAAGGATCTTCGAA
ATGGCGCATCATTTGTGCCGCAAAGTCATTAACGGTACTGAACATTTAAG
CGGTTTTATTAACTACGCGTTTCGCGAAAGAAGCAGACATGATTTTCGCG
ATTTGCTACATTTCGGAAAGTACGGTGAAGGAAAACTGAAGAATGTATCG
GAAGGGAACGCCTTTTGGGCGCCCGTTTTCTCTTATATTAACGCCCAGAA
AGAAATGTATATCCATGAGAAAAAGCTGACCACATTTCGCTTATTACAAT
CAAAATATATCGCTGTTATAGTTCCCCGATACATGATTTCGCTTCCCAAT
AAAATCATTAAAGGGATTGTTAGCTGTTCGCAAATTTTCGCGATTGCTGT
TGTCCTGGCTATCTTTTTCGGCATTTTCGTATGGTTTTTGGAACACTTCA
AGAACAAGGATTACCCAAAAGAATTCTATAAAGGTAGCTTGACGTCACTA
TGGTGGAGTATGGTATCCATGACAACTGTCGGATACGGTGATGTCGTTCC
AAAATCGTTATTCGGCCGTCTTGTCGGAATCGCATGGCTGTTTCTTGGTC
TCATGATCGGATGCGTGATGACGGCGACAATGACTGACGTCGTCGTTGCT
GGAGCCGGAGACCTTAAAGTATACGGTAAAACCGTATCTGTCTTGGCTGA
CTCCTATGAGGAAAAAATCGCCGGTAAGGACTACCGTGCCATTCCCGTTC
CGGCTGATTCATACGATGACGTAATTCGGTTAGTGAGGCAAGGGAAAGTT
TTCGGTGCAATGATAAATGCTGACGTTGCAGCTTGGTATCAAGAGGAGAT
AACCAATAATTCAGATCCTAACCCGTTGCACATCGTACGTTTACTACCAG
CTAACATTAATATCAATTGTGTCGTATCTGCTGAACCAAATCCCCTTATG
AAggaagttttcaaatgtatgTTTCGTCAACGTGAAGAAGTTTACGATAG
CTCGTATGAGTATTTTCAAAGTTATTGTCATACAGAAACGCTTTTCATTG
GCTCAATGTTAGATATCTTGCACGATAGTACAGCATTCCAAGGTCTGTTA
GCTGTTATTTTCATCATGATTTTCTTTGGTCTGTTATCTGatttatggaa
atatttcaactATAAAATTACTAAGGATCAAGAGAAACTATTGAATAGAA
GCCTGAGCAGGAATAAGACGTCCTCGGCAATGACGTCACCGGCTCGGTCA
GCAGTAATGACGGGAGGTTTCGGTGCACGGAATGGTTTATCGAGTTCAAC
GCACCGTCATACAAACGGGAGAACGGCTTTCTTACATACACGTCCAAGAC
CCTCGGATGTATGAAATGGAAATAACCATCTATAAGGCGGAGTATAGCCT
GTGCCACCCCGCCCACGggcgttttttgaaaattttgaaaaaacttgcca
TGTGTCGGTCTGTTTCGGTTAAGCAGGAACTTCGCattatcttttcagtc
agcgaagaagagtttggtacagacTAGGCGTTGTAGGAAGGACAATTTAT
ACCGATTAGTGATTGATGGTAAAACCATCTCGCGTTttaaattgaatgag
ccaaagTAATGGCTCGTGTATGGTTATAGCTATTCGCTCACGAATAAACG
AATGAACTTGCAGTTGAAAATTTTGCATATCGGAACGATAAATTACAATA
ATGCAAAGACAAACTAATCAGAAAATATCATTAAGacataaaaagttctt
ttggaAGAATTGACCACAAATTTTACCTTGGAATTATGCATTAGAACAAC
ATTTCGCAAGACATTTTGAAGTTACGTCATACCCGTATGTTGAAGTTAAG
GTTTATAATAGCAACTTTGGTTTTCGGAAGACATAGTGGATATCCGATGA
TATAGAAAAAGTGACATGTATAATGTTAGGTATTTATTTCACTAACAGGA
CAAATGTACAGTATATattatttcaaatcttttggtaatatttttcaaag
aaaatatataaaaattctGAAGTGCTTGCTTAAGGGCCTT Run BLAST on NCBI protein sequence of TCONS_00021664-protein >TCONS_00021664-protein ID=TCONS_00021664-protein|Name=TCONS_00021664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MSILPYWSFMMLVGILTTLPTCSAAHYHDDQRLDAIYWEIKPYIFRNEHN
EIDGIIPRIFEMAHHLCRKVINGTEHLSGFINYAFRERSRHDFRDLLHFG
KYGEGKLKNVSEGNAFWAPVFSYINAQKEMYIHEKKLTTFRLLQSKYIAV
IVPRYMISLPNKIIKGIVSCSQIFAIAVVLAIFFGIFVWFLEHFKNKDYP
KEFYKGSLTSLWWSMVSMTTVGYGDVVPKSLFGRLVGIAWLFLGLMIGCV
MTATMTDVVVAGAGDLKVYGKTVSVLADSYEEKIAGKDYRAIPVPADSYD
DVIRLVRQGKVFGAMINADVAAWYQEEITNNSDPNPLHIVRLLPANININ
CVVSAEPNPLMKEVFKCMFRQREEVYDSSYEYFQSYCHTETLFIGSMLDI
LHDSTAFQGLLAVIFIMIFFGLLSDLWKYFNYKITKDQEKLLNRSLSRNK
TSSAMTSPARSAVMTGGFGARNGLSSSTHRHTNGRTAFLHTRPRPSDV Run BLAST on NCBI transcript from alignment at sc0000391:144402..146741 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021664 ID=TCONS_00021664|Name=TCONS_00021664|organism=Clytia hemisphaerica|type=transcript|length=2340bp|location=Sequence derived from alignment at sc0000391:144402..146741 (Clytia hemisphaerica)
AAGGCCCTTAAGCAAGCACTTCagaatttttatatattttctttgaaaaa
tattaccaaaagatttgaaataatATATACTGTACATTTGTCCTGTTAGT
GAAATAAATACCTAACATTATACATGTCACTTTTTCTATATCATCGGATA
TCCACTATGTCTTCCGAAAACCAAAGTTGCTATTATAAACCTTAACTTCA
ACATACGGGTATGACGTAACTTCAAAATGTCTTGCGAAATGTTGTTCTAA
TGCATAATTCCAAGGTAAAATTTGTGGTCAATTCTtccaaaagaactttt
tatgtCTTAATGATATTTTCTGATTAGTTTGTCTTTGCATTATTGTAATT
TATCGTTCCGATATGCAAAATTTTCAACTGCAAGTTCATTCGTTTATTCG
TGAGCGAATAGCTATAACCATACACGAGCCATTActttggctcattcaat
ttaaAACGCGAGATGGTTTTACCATCAATCACTAATCGGTATAAATTGTC
CTTCCTACAACGCCTAgtctgtaccaaactcttcttcgctgactgaaaag
ataatGCGAAGTTCCTGCTTAACCGAAACAGACCGACACAtggcaagttt
tttcaaaattttcaaaaaacgccCGTGGGCGGGGTGGCACAGGCTATACT
CCGCCTTATAGATGGTTATTTCCATTTCATACATCCGAGGGTCTTGGACG
TGTATGTAAGAAAGCCGTTCTCCCGTTTGTATGACGGTGCGTTGAACTCG
ATAAACCATTCCGTGCACCGAAACCTCCCGTCATTACTGCTGACCGAGCC
GGTGACGTCATTGCCGAGGACGTCTTATTCCTGCTCAGGCTTCTATTCAA
TAGTTTCTCTTGATCCTTAGTAATTTTATagttgaaatatttccataaat
CAGATAACAGACCAAAGAAAATCATGATGAAAATAACAGCTAACAGACCT
TGGAATGCTGTACTATCGTGCAAGATATCTAACATTGAGCCAATGAAAAG
CGTTTCTGTATGACAATAACTTTGAAAATACTCATACGAGCTATCGTAAA
CTTCTTCACGTTGACGAAAcatacatttgaaaacttccTTCATAAGGGGA
TTTGGTTCAGCAGATACGACACAATTGATATTAATGTTAGCTGGTAGTAA
ACGTACGATGTGCAACGGGTTAGGATCTGAATTATTGGTTATCTCCTCTT
GATACCAAGCTGCAACGTCAGCATTTATCATTGCACCGAAAACTTTCCCT
TGCCTCACTAACCGAATTACGTCATCGTATGAATCAGCCGGAACGGGAAT
GGCACGGTAGTCCTTACCGGCGATTTTTTCCTCATAGGAGTCAGCCAAGA
CAGATACGGTTTTACCGTATACTTTAAGGTCTCCGGCTCCAGCAACGACG
ACGTCAGTCATTGTCGCCGTCATCACGCATCCGATCATGAGACCAAGAAA
CAGCCATGCGATTCCGACAAGACGGCCGAATAACGATTTTGGAACGACAT
CACCGTATCCGACAGTTGTCATGGATACCATACTCCACCATAGTGACGTC
AAGCTACCTTTATAGAATTCTTTTGGGTAATCCTTGTTCTTGAAGTGTTC
CAAAAACCATACGAAAATGCCGAAAAAGATAGCCAGGACAACAGCAATCG
CGAAAATTTGCGAACAGCTAACAATCCCTTTAATGATTTTATTGGGAAGC
GAAATCATGTATCGGGGAACTATAACAGCGATATATTTTGATTGTAATAA
GCGAAATGTGGTCAGCTTTTTCTCATGGATATACATTTCTTTCTGGGCGT
TAATATAAGAGAAAACGGGCGCCCAAAAGGCGTTCCCTTCCGATACATTC
TTCAGTTTTCCTTCACCGTACTTTCCGAAATGTAGCAAATCGCGAAAATC
ATGTCTGCTTCTTTCGCGAAACGCGTAGTTAATAAAACCGCTTAAATGTT
CAGTACCGTTAATGACTTTGCGGCACAAATGATGCGCCATTTCGAAGATC
CTTGGAATGATGCCATCAATCTCATTATGTTCGTTGCGGAAAATATACGG
CTTGATTTCCCAATAGATAGCGTCTAACCGTTGATCGTCATGATAATGAG
CAGCGCTGCATGTAGGTAAGGTGGTCAATATACCCACCAACATCATGAAG
CTCCAATACGGCAATATGCTCATTTTTTGATATGGTTGATGTTACATCAA
TGAATATGCGACGTCTGCTCTATTGGTTAAACAAACTAAAGACAAATTct
ctctgaaaatgaaaaaaaagtgaaaaaccaatgaaaatatcgaaagttcg
cgaaataatattttcattttgaacgaaacgtaaatttttc Coding sequence (CDS) from alignment at sc0000391:144402..146741 >TCONS_00021664 ID=TCONS_00021664|Name=TCONS_00021664|organism=Clytia hemisphaerica|type=CDS|length=1497bp|location=Sequence derived from alignment at sc0000391:144402..146741 (Clytia hemisphaerica)
TCATACATCCGAGGGTCTTGGACGTGTATGTAAGAAAGCCGTTCTCCCGT
TTGTATGACGGTGCGTTGAACTCGATAAACCATTCCGTGCACCGAAACCT
CCCGTCATTACTGCTGACCGAGCCGGTGACGTCATTGCCGAGGACGTCTT
ATTCCTGCTCAGGCTTCTATTCAATAGTTTCTCTTGATCCTTAGTAATTT
TATagttgaaatatttccataaatCAGATAACAGACCAAAGAAAATCATG
ATGAAAATAACAGCTAACAGACCTTGGAATGCTGTACTATCGTGCAAGAT
ATCTAACATTGAGCCAATGAAAAGCGTTTCTGTATGACAATAACTTTGAA
AATACTCATACGAGCTATCGTAAACTTCTTCACGTTGACGAAAcatacat
ttgaaaacttccTTCATAAGGGGATTTGGTTCAGCAGATACGACACAATT
GATATTAATGTTAGCTGGTAGTAAACGTACGATGTGCAACGGGTTAGGAT
CTGAATTATTGGTTATCTCCTCTTGATACCAAGCTGCAACGTCAGCATTT
ATCATTGCACCGAAAACTTTCCCTTGCCTCACTAACCGAATTACGTCATC
GTATGAATCAGCCGGAACGGGAATGGCACGGTAGTCCTTACCGGCGATTT
TTTCCTCATAGGAGTCAGCCAAGACAGATACGGTTTTACCGTATACTTTA
AGGTCTCCGGCTCCAGCAACGACGACGTCAGTCATTGTCGCCGTCATCAC
GCATCCGATCATGAGACCAAGAAACAGCCATGCGATTCCGACAAGACGGC
CGAATAACGATTTTGGAACGACATCACCGTATCCGACAGTTGTCATGGAT
ACCATACTCCACCATAGTGACGTCAAGCTACCTTTATAGAATTCTTTTGG
GTAATCCTTGTTCTTGAAGTGTTCCAAAAACCATACGAAAATGCCGAAAA
AGATAGCCAGGACAACAGCAATCGCGAAAATTTGCGAACAGCTAACAATC
CCTTTAATGATTTTATTGGGAAGCGAAATCATGTATCGGGGAACTATAAC
AGCGATATATTTTGATTGTAATAAGCGAAATGTGGTCAGCTTTTTCTCAT
GGATATACATTTCTTTCTGGGCGTTAATATAAGAGAAAACGGGCGCCCAA
AAGGCGTTCCCTTCCGATACATTCTTCAGTTTTCCTTCACCGTACTTTCC
GAAATGTAGCAAATCGCGAAAATCATGTCTGCTTCTTTCGCGAAACGCGT
AGTTAATAAAACCGCTTAAATGTTCAGTACCGTTAATGACTTTGCGGCAC
AAATGATGCGCCATTTCGAAGATCCTTGGAATGATGCCATCAATCTCATT
ATGTTCGTTGCGGAAAATATACGGCTTGATTTCCCAATAGATAGCGTCTA
ACCGTTGATCGTCATGATAATGAGCAGCGCTGCATGTAGGTAAGGTGGTC
AATATACCCACCAACATCATGAAGCTCCAATACGGCAATATGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021664-exon-sc0000391-1491911889:144402..146741 | TCONS_00021664-exon-sc0000391-1491911889:144402..146741 | Clytia hemisphaerica | exon |
| TCONS_00021664-exon-sc0000391-1510915933:144402..146741 | TCONS_00021664-exon-sc0000391-1510915933:144402..146741 | Clytia hemisphaerica | exon |
| TCONS_00021664-exon-sc0000391-1575043694:144402..146741 | TCONS_00021664-exon-sc0000391-1575043694:144402..146741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:144402..146741 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004970 | ionotropic glutamate receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
The following BLAST results are available for this feature:
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