TCONS_00021662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021662
Unique NameTCONS_00021662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021662 ID=TCONS_00021662|Name=TCONS_00021662|organism=Clytia hemisphaerica|type=transcript|length=285bp
GCCTTATGTAATCTTCGAAACGACTGCTCAACCGGCCATGACCAGATACC
GTCGAAATACATTAAACTCGCCATCGATGAAATTTGTAGTCCCATTTGCC
ATATTATCAACTCTTCCATTCAACAATCCGTCTTTCCTAGCCAGTGGAAG
ATCTCGAAAATCAGCCCCATTCCTAAAATTGAGTCACCCGCTGATCCGAG
CGACTACCGTCCAATCTCCATATTACCGATCCTTTCAAAAGTATACGAGA
GACTGATTATGACACAAATGACAAACTATCTAGAA
Run BLAST on NCBI

transcript from alignment at sc0000391:130443..130727

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021662 ID=TCONS_00021662|Name=TCONS_00021662|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000391:130443..130727 (Clytia hemisphaerica)
TTCTAGATAGTTTGTCATTTGTGTCATAATCAGTCTCTCGTATACTTTTG
AAAGGATCGGTAATATGGAGATTGGACGGTAGTCGCTCGGATCAGCGGGT
GACTCAATTTTAGGAATGGGGCTGATTTTCGAGATCTTCCACTGGCTAGG
AAAGACGGATTGTTGAATGGAAGAGTTGATAATATGGCAAATGGGACTAC
AAATTTCATCGATGGCGAGTTTAATGTATTTCGACGGTATCTGGTCATGG
CCGGTTGAGCAGTCGTTTCGAAGATTACATAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012151XLOC_012151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021662-exon-sc0000391-1491911889:130443..130727TCONS_00021662-exon-sc0000391-1491911889:130443..130727Clytia hemisphaericaexon
TCONS_00021662-exon-sc0000391-1510915933:130443..130727TCONS_00021662-exon-sc0000391-1510915933:130443..130727Clytia hemisphaericaexon
TCONS_00021662-exon-sc0000391-1575043694:130443..130727TCONS_00021662-exon-sc0000391-1575043694:130443..130727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:130443..130727 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51155	7.55921	4.99411	4.33674	5.49698	0.859212	2.80197	7.11573	1.1723	4.77168	0.469808	8.77471	7.8951	6.21853	2.55836	1.64841	1.74056	0.552919	8.82176	2.84468	2.98975	0.915603	1.20094	1.9151	10.0994	2.9563	3.81509	0	1.86386	3.3484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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