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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021657 ID=TCONS_00021657|Name=TCONS_00021657|organism=Clytia hemisphaerica|type=transcript|length=1197bp
CAAggctttaaaaaattgttttcatatttttaggGAAAGGAGAAAATTTA
CCTAATGTCATGTCTATAACAAATGCTTTGAACAATTTTCGAGATGAATT
GATAAAGATCGAAGAATCAGAGAAGGAAAATACCTCTTTCATGATGAGGT
TTAGGAAATTGAATTTACAGTTCTTCCCTACTTTGTCTTGGAAGCTGTTT
TTCCCGCTGGAACTTTTGACTTTTCTTGCCATGACCATTTACTGTTGGGC
TGAAgtacatttttggaaaagaaacAGTTCATTCTTTATTGAATTTTGGC
TTGTACATTTGTTTATATGCTTTGGTGTTTTTGCTATATTGAAAGGTAGC
TCATCTCCAAGTTTGAGACCTCTTATAAAAGAGTTCTGGCCACTGTTATT
CTGTCATGTGGTTCTTACCATTGATTCATGTCTTGATTTTGATACGTTTA
CGAAAAAATCAGCTGGTACAGAATATTATCAATTCACCCAAGTATTACTT
GTCCCAGTGCTATTTATCATGCTGAAAGAAATATGCAGTTCCAAGTTACC
ATCAAAGGTGATTTATTTGTCGCTGGCTGTTTTGATTTGGCaaatgtcaa
ttttattctCAGATATGGAATTCCATCTAAAATTCAATACCAGTCTTTTT
TCATTGGTCATTGCAAGTGTATATGGTTTTTACATTGTccttttgagaga
aaaattatCAGTTTATTCTGTATTGGAAGTTATTTATGTTTTGTCGCTGT
CCATTGTTTTGGTGCTACCTGTTTTCATCTTGTTTCATCACTCATCAACG
CAAAGCAGATCAAACACTGAATTCACAATATCCAAAATAATGAACATCAT
TTTAATGGCAATACTTAAAGTTTTGAGTTGGGGTTTATCATTGGTTACAT
TGAAAAGAATCCATCCCTTGCTGGCGCTGTTAACGTTTAGGTTGGTTTCA
ATACCTGATCACTTTATACAAGCTCTTGTTTACAAGTTAGATTGTGTTTT
GTCCGGCTCCAAAGTATGCATTATTGCTGCTATTCAATTCATTCTTGTAc
atatcatttattttttctccaGTGAAGATATTTAGACTGAATGGTGTATC
ATATATATTAACTATTCTGTAATttggattttcttttatttcaagcaTTC
TCACCTAAACAaatgaaattaaacaaaaatagaGCTGAAGTCTCCCT Run BLAST on NCBI protein sequence of TCONS_00021657-protein >TCONS_00021657-protein ID=TCONS_00021657-protein|Name=TCONS_00021657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MSITNALNNFRDELIKIEESEKENTSFMMRFRKLNLQFFPTLSWKLFFPL
ELLTFLAMTIYCWAEVHFWKRNSSFFIEFWLVHLFICFGVFAILKGSSSP
SLRPLIKEFWPLLFCHVVLTIDSCLDFDTFTKKSAGTEYYQFTQVLLVPV
LFIMLKEICSSKLPSKVIYLSLAVLIWQMSILFSDMEFHLKFNTSLFSLV
IASVYGFYIVLLREKLSVYSVLEVIYVLSLSIVLVLPVFILFHHSSTQSR
SNTEFTISKIMNIILMAILKVLSWGLSLVTLKRIHPLLALLTFRLVSIPD
HFIQALVYKLDCVLSGSKVCIIAAIQFILVHIIYFFSSEDI Run BLAST on NCBI transcript from alignment at sc0000391:26571..27767 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021657 ID=TCONS_00021657|Name=TCONS_00021657|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at sc0000391:26571..27767 (Clytia hemisphaerica)
AGGGAGACTTCAGCtctatttttgtttaatttcattTGTTTAGGTGAGAA
tgcttgaaataaaagaaaatccaaATTACAGAATAGTTAATATATATGAT
ACACCATTCAGTCTAAATATCTTCACtggagaaaaaataaatgatatgTA
CAAGAATGAATTGAATAGCAGCAATAATGCATACTTTGGAGCCGGACAAA
ACACAATCTAACTTGTAAACAAGAGCTTGTATAAAGTGATCAGGTATTGA
AACCAACCTAAACGTTAACAGCGCCAGCAAGGGATGGATTCTTTTCAATG
TAACCAATGATAAACCCCAACTCAAAACTTTAAGTATTGCCATTAAAATG
ATGTTCATTATTTTGGATATTGTGAATTCAGTGTTTGATCTGCTTTGCGT
TGATGAGTGATGAAACAAGATGAAAACAGGTAGCACCAAAACAATGGACA
GCGACAAAACATAAATAACTTCCAATACAGAATAAACTGataatttttct
ctcaaaaggACAATGTAAAAACCATATACACTTGCAATGACCAATGAAAA
AAGACTGGTATTGAATTTTAGATGGAATTCCATATCTGagaataaaattg
acatttGCCAAATCAAAACAGCCAGCGACAAATAAATCACCTTTGATGGT
AACTTGGAACTGCATATTTCTTTCAGCATGATAAATAGCACTGGGACAAG
TAATACTTGGGTGAATTGATAATATTCTGTACCAGCTGATTTTTTCGTAA
ACGTATCAAAATCAAGACATGAATCAATGGTAAGAACCACATGACAGAAT
AACAGTGGCCAGAACTCTTTTATAAGAGGTCTCAAACTTGGAGATGAGCT
ACCTTTCAATATAGCAAAAACACCAAAGCATATAAACAAATGTACAAGCC
AAAATTCAATAAAGAATGAACTgtttcttttccaaaaatgtacTTCAGCC
CAACAGTAAATGGTCATGGCAAGAAAAGTCAAAAGTTCCAGCGGGAAAAA
CAGCTTCCAAGACAAAGTAGGGAAGAACTGTAAATTCAATTTCCTAAACC
TCATCATGAAAGAGGTATTTTCCTTCTCTGATTCTTCGATCTTTATCAAT
TCATCTCGAAAATTGTTCAAAGCATTTGTTATAGACATGACATTAGGTAA
ATTTTCTCCTTTCcctaaaaatatgaaaacaattttttaaagccTTG Coding sequence (CDS) from alignment at sc0000391:26571..27767 >TCONS_00021657 ID=TCONS_00021657|Name=TCONS_00021657|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000391:26571..27767 (Clytia hemisphaerica)
CTAAATATCTTCACtggagaaaaaataaatgatatgTACAAGAATGAATT
GAATAGCAGCAATAATGCATACTTTGGAGCCGGACAAAACACAATCTAAC
TTGTAAACAAGAGCTTGTATAAAGTGATCAGGTATTGAAACCAACCTAAA
CGTTAACAGCGCCAGCAAGGGATGGATTCTTTTCAATGTAACCAATGATA
AACCCCAACTCAAAACTTTAAGTATTGCCATTAAAATGATGTTCATTATT
TTGGATATTGTGAATTCAGTGTTTGATCTGCTTTGCGTTGATGAGTGATG
AAACAAGATGAAAACAGGTAGCACCAAAACAATGGACAGCGACAAAACAT
AAATAACTTCCAATACAGAATAAACTGataatttttctctcaaaaggACA
ATGTAAAAACCATATACACTTGCAATGACCAATGAAAAAAGACTGGTATT
GAATTTTAGATGGAATTCCATATCTGagaataaaattgacatttGCCAAA
TCAAAACAGCCAGCGACAAATAAATCACCTTTGATGGTAACTTGGAACTG
CATATTTCTTTCAGCATGATAAATAGCACTGGGACAAGTAATACTTGGGT
GAATTGATAATATTCTGTACCAGCTGATTTTTTCGTAAACGTATCAAAAT
CAAGACATGAATCAATGGTAAGAACCACATGACAGAATAACAGTGGCCAG
AACTCTTTTATAAGAGGTCTCAAACTTGGAGATGAGCTACCTTTCAATAT
AGCAAAAACACCAAAGCATATAAACAAATGTACAAGCCAAAATTCAATAA
AGAATGAACTgtttcttttccaaaaatgtacTTCAGCCCAACAGTAAATG
GTCATGGCAAGAAAAGTCAAAAGTTCCAGCGGGAAAAACAGCTTCCAAGA
CAAAGTAGGGAAGAACTGTAAATTCAATTTCCTAAACCTCATCATGAAAG
AGGTATTTTCCTTCTCTGATTCTTCGATCTTTATCAATTCATCTCGAAAA
TTGTTCAAAGCATTTGTTATAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021657-exon-sc0000391-1491911889:26571..27767 | TCONS_00021657-exon-sc0000391-1491911889:26571..27767 | Clytia hemisphaerica | exon |
| TCONS_00021657-exon-sc0000391-1510915933:26571..27767 | TCONS_00021657-exon-sc0000391-1510915933:26571..27767 | Clytia hemisphaerica | exon |
| TCONS_00021657-exon-sc0000391-1575043694:26571..27767 | TCONS_00021657-exon-sc0000391-1575043694:26571..27767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:26571..27767 . |
Blast
The following BLAST results are available for this feature:
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