TCONS_00021639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021639
Unique NameTCONS_00021639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021639 ID=TCONS_00021639|Name=TCONS_00021639|organism=Clytia hemisphaerica|type=transcript|length=1790bp
tttcagacaaaaaattaacaaacagaaacaaacaaaatattaaataattt
tttatacaaaatggCTGCACCTAATCCATCTTCAACCAACTCAACAACTC
AACCTATCTCGATGATGGGCACTGCAGCCATGGGTATTGTACAGAATCCA
CAGAATATGACCATTTTACAGAACCGTGCCCAACAACAGCTCTTCCAAAG
CTCTGCAAGACCATCGCCACAACAGCTAGTGACTGGTGTACGACCTATTG
TCAATGTAGGGAACCAACAAGCTGTCACNATGCCCAACAGCAGCTCTTCC
AAAGCTCTGCAAGACCATCGCCACAACAGCTAGTGACTGGTGTACGACCT
ATTGTCAATGTAGGGAACCAACAAGCTGTCACCACGCTACAAAATATACA
AGTTTTAGGTGCAGCAAACCATCCTGACGGTATGGGAAGTATCCCCATTA
ACATCATTACAACAGGTGGTCAAACCTTTGCTGTTGCATCAAACATCTCA
GGTGGCCTACCTAACCAAGTCAGTCAGATACGCCCCATTGCACCGAATGC
GGCCACGGTTGTTAGCCAGCTTGGTGGTGCACCACAGATACGAGCCGCTT
TTGATGGAAGAAAAATCAGCCAAGTGAAAGGTGTGCCCAATGTCGGTGCA
ATTACTGCAGCAGCAACGGTTGTCGGTCAACCCGCCAAATCAACACAAGG
GAACTTAACGCTACCCATACAATCTATCACTGCGACAACTTCCAACACTC
CTTCGTCAAACACCAGCACGCCCCAACAATCCTCATCCGCCACCGCCCAA
CCACAACACAGTTCCCAAGCACTCACTAAACGGAAACTTCAAGATCTGTT
ACATGAGATTGATCCCACAGAAACAATGGATGATGACGTGGAAGAGGCCT
TGCTCCACATTGCTGACGATTTCATTGAGAATGTCATCACGGCCTCGTGT
CAACTAGCAAAACACAGGCGCTCGAATATATTGGACGTCAAAGATGTTCA
GTTACACTTAGATCGTAATTGGAACATGTGGATCCCAGGCTTCGGTAGTG
AAGATTTACGACCGTATAAAAAAGCACCGGCAACCGAAGCTCATAAGCAG
AGATTGGCATTGATAAAAAAAGCAATGAAGAAATAAGAGGTACACATTTC
ATTATGATTGGTATTTACTACATATGTTTTCCGTGGCGAAAAAAAACAAG
AGCTTGGAAGTAGTAAATCATATTCGAGACTCCACTGAGCAGAGAGAACT
TCGATCGGGTTGGCTTCTTCTGGCTATATTACAGTTGGTTTTGACCCTAC
TTTAACACCATTCTGTCAAGACTTTAAGATGTAAGACAATATTGTGAACT
TGGTGAGTCATGGGTGATCGAGACCAACGCGCTTCGGTGAGGACTTTCTG
TTGGTCTAAAAATTTGGATACATTTGCGTCTTACCAACAGAACAGCAATC
AGTCCTGGTTACCCATTGATCATATCTTCAAAATTGCTTTATGATAAATA
GTACATTTGATTGAAGCACCTATTAAGAGACATTTCAATGTAAATTctgg
tttttcatttttgcaattttatgTATGCAATTTTAAATGGAGAAATTGTT
TATTTATGACAAATATGTACATATAACATTAAAAAAGTTTCCCACTTTTG
ATATGCTTGAAACGATTACTATCATCAATATTTTACATGATGAAAAGGCT
TTCGTGTTGTGAAAAAATGAGATATGATCTAGCATGGACCTTTAGCAAGT
TTTTCGAATTCATTGATATAgatattcattttgaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00021639-protein

>TCONS_00021639-protein ID=TCONS_00021639-protein|Name=TCONS_00021639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MGSIPINIITTGGQTFAVASNISGGLPNQVSQIRPIAPNAATVVSQLGGA
PQIRAAFDGRKISQVKGVPNVGAITAAATVVGQPAKSTQGNLTLPIQSIT
ATTSNTPSSNTSTPQQSSSATAQPQHSSQALTKRKLQDLLHEIDPTETMD
DDVEEALLHIADDFIENVITASCQLAKHRRSNILDVKDVQLHLDRNWNMW
IPGFGSEDLRPYKKAPATEAHKQRLALIKKAMKK
Run BLAST on NCBI

transcript from alignment at sc0000391:175395..180663+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021639 ID=TCONS_00021639|Name=TCONS_00021639|organism=Clytia hemisphaerica|type=transcript|length=5269bp|location=Sequence derived from alignment at sc0000391:175395..180663+ (Clytia hemisphaerica)
tttcagacaaaaaattaacaaacagaaacaaacaaaatattaaataattt
tttatacaaaatggCTGCACCTAATCCATCTTCAACCAACTCAACAACTC
AACCTATCTCGATGATGGGCACTGCAGCCATGGGTATTGTACAGAATCCA
CAGAATATGACCATTTTACAGAACCGTGCCCAACAACAGCTCTTCCAAAG
CTCTGCAAGACCATCGCCACAACAGCTAGTGACTGGTGTACGACCTATTG
TCAATGTAGGGAACCAACAAGCTGTCACNATGCCCAACAGCAGCTCTTCC
AAAGCTCTGCAAGACCATCGCCACAACAGCTAGTGACTGGTGTACGACCT
ATTGTCAATGTAGGGAACCAACAAGCTGTCACCACGCTACAAAATATACA
AGTTTTAGGTACAGTTGCAATTCTTTATCAGTCTAAATTCTATCAATCTA
TCTTATGATCTAATGATCTAATGATTTAATAATCTTTTTTCTCTAATGAT
TCAAGTGCTAAAAAACGCTCCCCAAAAGCGTTAGAAAAGGCCTTAAGCGA
CTCGAATTGAATTAGAAATTTATTTGACAATTTTCTATCTTACAATCAAT
ATCACTTGTCTAATTCGGATTCGGACTATCGATCTGTTAGTCCTCATTAA
AAAGCATATAAAAATTTATCACTCACAAAATCCACAAAATGTAGGTCCAA
CCAGCAAATAATAATCATATAGTTCTTGATCATAATACAAAAAGCGTAGC
AAAGTCAGCTTTGTAGTGTTACCTAagaaatttgtaatttttttttcatg
aaaaggtTAGCGAACGCTCCCTGAAGGTCATGTTAATCGGGGTCAAAGAA
GGAAAATTGTGTAAAAAGAACCTTTTAGTGTTGCGTTATGGTGTCTCAGG
GTTTCTAAATATTTGCCAATTCTTTTAATGTATAGGTGCAGCAAACCATC
CTGACGGTATGGGAAGTATCCCCATTAACATCATTACAACAGGTGGTCAA
ACCTTTGCTGTTGCATCAAACATCTCAGGTGGCCTACCTAACCAAGTCAG
TCAGATACGCCCCATTGCACCGAATGCGGCCACGGTTGTTAGCCAGCTTG
GTGGTGCACCACAGATACGAGCCGGTCAGTCTATAGTTTCATTATCCAGC
ATACTAAGTGACTTTGAATATTTCCTTTTAACATGATATATCATAGGTCC
CATAACGTCATGATTTCTGTAagcttatttatttatttattagacACTCA
CAGATTTCTACATACATTTGACGTGTTACTTCCTTGGTTTACTCTAACAT
GATCATCCTTTAGCGTCCTGTTTTCCCGAATTATATAAACAGTGAACTCG
GAAGAAATTGTGGTTTTAATATTAACAAGGGGCACATGGGGACGAGTAGC
TAAAAATGAGGGGTTAATTTGACATAttctaatttttaaaaacattttta
cccTCGATAAAATTAGCTTTNGGGCACATGGGGACGAGTAGCTAAAAATG
AGGGGTTAATTTGACATAttctaatttttaaaaacatttttacccTCGAT
AAAATTAGCTTTGTTTCAGTTTACATTTAAAGCCAACTTCAAATCTATAT
TTCAGCTTTTGATGGAAGAAAAATCAGCCAAGTGAAAGGTATATTTGCCC
ATTTCATTTTACATACCCTGCGTTTCCTCTTTAAAGGAAATCATTTAACT
TATCTCCTTCTATTTGCTTACTTACAGTAGTTTTAAACAAAAGACAGAGC
AACTTTCTGCCTCTCTAGCACCGTGCGGTCaaagattttgagaaattatt
ttgttaattctgCTTTATCAGTACTATAGCCGTCTTCCCTTATCatcata
aaaaagaatatctttaaggTTAGTTTACTTTTGATGATAACAGCTTTAGT
TTTTGTGACTGTTAAAGCACCATTTCTCGCATCGattgaattgaaattca
aattttcgttCCATCTCAGGTGTGCCCAATGTCGGTGCAATTACTGCAGC
AGCAACGGTTGTCGGTCAACCCGCCAAATCAACACAAGGGAACTGTAAGT
TATATTTGCAGAAGATGTTATTTTGATAAAGAGGAACCTCTGATATCACG
AACCATAATGTAATGTATTGCGGAAACAGTTTCTTCCTTCGAATCCGTTA
CGGGTGGGCACTACAACGTACGCCTTCCCATTGCGAATGTGGAACTCCGT
TCTCGCTCGAACATGCCATGACGTGCAAAAAAGGGGGTTTCGTATCAATG
AGGCACAACGAGATCCGCGACTTCATAGCAAACCAGCTATCAAAGGTTTG
CCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAGGGCAACC
TAGATTTGTTTTATAGCGTGCCGGGAAAGCCTCCGGAGTTATTTGATTGT
AATAGGCTAATGctacatttgaaaaataacgtATACTCTAGATATGCTAA
CAAgagcaaaatgaaaaaaaaaaaaaaaaaaacagtttcttCCTGTATGG
ACTTCACTAAATAAAAGACTAATGTTACTACAGAGAGCGGCTTGGGATAA
AAATATCATGAacggaaacaaaaaaaaaacctgaaaaacatCGTTAAAGG
CGTTAAAGGATAGTTAAAAATTCGTTAATAAAAATATATAGCGGGAAAGG
AGATATAAGAATGTTTTGGGTGAAAGCTTTGAAACATTAATTGCCTTTGg
agtattttttcttttttttaatttgttctttaTTTATCGTTGAAAATAAA
GAATAGTTGCAAGTACTAATCAAATCCAACATGACATTCGAATATTTACT
ATATAGtaaataataattataaaatttaaaaaacactaGAATATAGAACA
GACTTTGCATGAACAATAGATTTTAGCCttgatgattttgaaaaaaactc
atCTAAAGaatcaatatttttaaattctaaaggTAGTCTATTCCAAGCTT
GTCCAGCTTGGAAATTAAAGTAGGGGGGTGAGTACGTTTAAACTTTTGTT
CGTTAAATTTACTATTATTGTCTTCCTTAAACCAACAGTAACGCTACCCA
TACAATCTATCACTGCGACAACTTCCAACACTCCTTCGTCAAACACCAGC
ACGCCCCAACAATCCTCATCCGCCACCGCCCAACCACAACACAGTTCCCA
AGCACTCACTAAACGGAAACTTCAAGATCTGTTACATGAGATTGATCCCA
CAGAAACAATGGATGATGACGTGGAAGAGGCCTTGCTCCACATTGCTGAC
GATTTCATTGAGAATGTCATCACGGCCTCGTGTCAACTAGCAAAACACAG
GCGCTCGAATATATTGGACGTCAAAGATGTTCAGTTACACTTAGGTAAGC
AGGGTTCCAATATAACAGATAAGTGTTCAAATTGGATATAGATTGGTTAG
TTGAATATGATTAGAACTTGGGCGTACTTAGTGCAGATCTTCAACTGAAG
TTGACCTCCCTTATTCGATGTTTTACTATTCGATATGcttcattattcga
taataatACTGAAAGTCACCGTCATCAACAaactcataaacgacgctcca
cCATTCGAAACGCTCCCTTTTTACATTAAAATCCCATATTCCTCGAAAAT
CTaattaaagagcgtcaactgtattttgtTTTATCCATTATTCTCTTTGG
GTGACATAGCATTTGTTGTATATGAAACACTGTGATTGTTAAACATGTTT
TTGTAGATCGTAATTGGAACATGTGGATCCCAGGCTTCGGTAGTGAAGAT
TTACGACCGTATAAAAAAGCACCGGCAACCGAAGCTCATAAGCAGGTTTG
TATGACATAAAGCATTTTTTTGCAAGTCTTTTATAGGTTTTGTCTAAGTT
TACTTACAGTACGTTATCTGCTCTTCAACGCCGGTTCTTTTCGGCAATTT
TTCTCCTGTTGCGGAAGTAAGGCCGGCTTATTACACCCGGCTTATTACGC
CggtcaatttttttgattcTATTTAAAGAGGATTTAAGTGCGAttaggaa
agaaaaattatcttttttttttaagtgctTCTTTTAGTTAAATTTTTCGA
CCGTTTTCCAGCCGGTCGAAGTAATGACATTTATTATTAccaattcaatt
caatatttacaattttgaaGGATTTAGGGCCAGCGTGAAGAGGGTCCTCA
AATATAGCGTGGTTACTGCAACTTGAATTGTCTGATATGTTTTGTTCCAC
ACacattttctcttctttcattTTAACAGAGATTGGCATTGATAAAAAAA
GCAATGAAGAAATAAGAGGTACACATTTCATTATGATTGGTATTTACTAC
ATATGTTTTCCGTGGCGAAAAAAAACAAGAGCTTGGAAGTAGTAAATCAT
ATTCGAGACTCCACTGAGCAGAGAGAACTTCGATCGGGTTGGCTTCTTCT
GGCTATATTACAGTTGGTTTTGACCCTACTTTAACACCATTCTGTCAAGA
CTTTAAGATGTAAGACAATATTGTGAACTTGGTGAGTCATGGGTGATCGA
GACCAACGCGCTTCGGTGAGGACTTTCTGTTGGTCTAAAAATTTGGATAC
ATTTGCGTCTTACCAACAGAACAGCAATCAGTCCTGGTTACCCATTGATC
ATATCTTCAAAATTGCTTTATGATAAATAGTACATTTGATTGAAGCACCT
ATTAAGAGACATTTCAATGTAAATTctggtttttcatttttgcaatttta
tgTATGCAATTTTAAATGGAGAAATTGTTTATTTATGACAAATATGTACA
TATAACATTAAAAAAGTTTCCCACTTTTGATATGCTTGAAACGATTACTA
TCATCAATATTTTACATGATGAAAAGGCTTTCGTGTTGTGAAAAAATGAG
ATATGATCTAGCATGGACCTTTAGCAAGTTTTTCGAATTCATTGATATAg
atattcattttgaaaaaat

Coding sequence (CDS) from alignment at sc0000391:175395..180663+

>TCONS_00021639 ID=TCONS_00021639|Name=TCONS_00021639|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at sc0000391:175395..180663+ (Clytia hemisphaerica)
ATGGGAAGTATCCCCATTAACATCATTACAACAGGTGGTCAAACCTTTGC
TGTTGCATCAAACATCTCAGGTGGCCTACCTAACCAAGTCAGTCAGATAC
GCCCCATTGCACCGAATGCGGCCACGGTTGTTAGCCAGCTTGGTGGTGCA
CCACAGATACGAGCCGCTTTTGATGGAAGAAAAATCAGCCAAGTGAAAGG
TGTGCCCAATGTCGGTGCAATTACTGCAGCAGCAACGGTTGTCGGTCAAC
CCGCCAAATCAACACAAGGGAACTTAACGCTACCCATACAATCTATCACT
GCGACAACTTCCAACACTCCTTCGTCAAACACCAGCACGCCCCAACAATC
CTCATCCGCCACCGCCCAACCACAACACAGTTCCCAAGCACTCACTAAAC
GGAAACTTCAAGATCTGTTACATGAGATTGATCCCACAGAAACAATGGAT
GATGACGTGGAAGAGGCCTTGCTCCACATTGCTGACGATTTCATTGAGAA
TGTCATCACGGCCTCGTGTCAACTAGCAAAACACAGGCGCTCGAATATAT
TGGACGTCAAAGATGTTCAGTTACACTTAGATCGTAATTGGAACATGTGG
ATCCCAGGCTTCGGTAGTGAAGATTTACGACCGTATAAAAAAGCACCGGC
AACCGAAGCTCATAAGCAGAGATTGGCATTGATAAAAAAAGCAATGAAGA
AATAAATGGGAAGTATCCCCATTAACATCATTACAACAGGTGGTCAAACC
TTTGCTGTTGCATCAAACATCTCAGGTGGCCTACCTAACCAAGTCAGTCA
GATACGCCCCATTGCACCGAATGCGGCCACGGTTGTTAGCCAGCTTGGTG
GTGCACCACAGATACGAGCCGCTTTTGATGGAAGAAAAATCAGCCAAGTG
AAAGGTGTGCCCAATGTCGGTGCAATTACTGCAGCAGCAACGGTTGTCGG
TCAACCCGCCAAATCAACACAAGGGAACTTAACGCTACCCATACAATCTA
TCACTGCGACAACTTCCAACACTCCTTCGTCAAACACCAGCACGCCCCAA
CAATCCTCATCCGCCACCGCCCAACCACAACACAGTTCCCAAGCACTCAC
TAAACGGAAACTTCAAGATCTGTTACATGAGATTGATCCCACAGAAACAA
TGGATGATGACGTGGAAGAGGCCTTGCTCCACATTGCTGACGATTTCATT
GAGAATGTCATCACGGCCTCGTGTCAACTAGCAAAACACAGGCGCTCGAA
TATATTGGACGTCAAAGATGTTCAGTTACACTTAGATCGTAATTGGAACA
TGTGGATCCCAGGCTTCGGTAGTGAAGATTTACGACCGTATAAAAAAGCA
CCGGCAACCGAAGCTCATAAGCAGAGATTGGCATTGATAAAAAAAGCAAT
GAAGAAATAAATGGGAAGTATCCCCATTAACATCATTACAACAGGTGGTC
AAACCTTTGCTGTTGCATCAAACATCTCAGGTGGCCTACCTAACCAAGTC
AGTCAGATACGCCCCATTGCACCGAATGCGGCCACGGTTGTTAGCCAGCT
TGGTGGTGCACCACAGATACGAGCCGCTTTTGATGGAAGAAAAATCAGCC
AAGTGAAAGGTGTGCCCAATGTCGGTGCAATTACTGCAGCAGCAACGGTT
GTCGGTCAACCCGCCAAATCAACACAAGGGAACTTAACGCTACCCATACA
ATCTATCACTGCGACAACTTCCAACACTCCTTCGTCAAACACCAGCACGC
CCCAACAATCCTCATCCGCCACCGCCCAACCACAACACAGTTCCCAAGCA
CTCACTAAACGGAAACTTCAAGATCTGTTACATGAGATTGATCCCACAGA
AACAATGGATGATGACGTGGAAGAGGCCTTGCTCCACATTGCTGACGATT
TCATTGAGAATGTCATCACGGCCTCGTGTCAACTAGCAAAACACAGGCGC
TCGAATATATTGGACGTCAAAGATGTTCAGTTACACTTAGATCGTAATTG
GAACATGTGGATCCCAGGCTTCGGTAGTGAAGATTTACGACCGTATAAAA
AAGCACCGGCAACCGAAGCTCATAAGCAGAGATTGGCATTGATAAAAAAA
GCAATGAAGAAATAAATGGGAAGTATCCCCATTAACATCATTACAACAGG
TGGTCAAACCTTTGCTGTTGCATCAAACATCTCAGGTGGCCTACCTAACC
AAGTCAGTCAGATACGCCCCATTGCACCGAATGCGGCCACGGTTGTTAGC
CAGCTTGGTGGTGCACCACAGATACGAGCCGCTTTTGATGGAAGAAAAAT
CAGCCAAGTGAAAGGTGTGCCCAATGTCGGTGCAATTACTGCAGCAGCAA
CGGTTGTCGGTCAACCCGCCAAATCAACACAAGGGAACTTAACGCTACCC
ATACAATCTATCACTGCGACAACTTCCAACACTCCTTCGTCAAACACCAG
CACGCCCCAACAATCCTCATCCGCCACCGCCCAACCACAACACAGTTCCC
AAGCACTCACTAAACGGAAACTTCAAGATCTGTTACATGAGATTGATCCC
ACAGAAACAATGGATGATGACGTGGAAGAGGCCTTGCTCCACATTGCTGA
CGATTTCATTGAGAATGTCATCACGGCCTCGTGTCAACTAGCAAAACACA
GGCGCTCGAATATATTGGACGTCAAAGATGTTCAGTTACACTTAGATCGT
AATTGGAACATGTGGATCCCAGGCTTCGGTAGTGAAGATTTACGACCGTA
TAAAAAAGCACCGGCAACCGAAGCTCATAAGCAGAGATTGGCATTGATAA
AAAAAGCAATGAAGAAATAAATGGGAAGTATCCCCATTAACATCATTACA
ACAGGTGGTCAAACCTTTGCTGTTGCATCAAACATCTCAGGTGGCCTACC
TAACCAAGTCAGTCAGATACGCCCCATTGCACCGAATGCGGCCACGGTTG
TTAGCCAGCTTGGTGGTGCACCACAGATACGAGCCGCTTTTGATGGAAGA
AAAATCAGCCAAGTGAAAGGTGTGCCCAATGTCGGTGCAATTACTGCAGC
AGCAACGGTTGTCGGTCAACCCGCCAAATCAACACAAGGGAACTTAACGC
TACCCATACAATCTATCACTGCGACAACTTCCAACACTCCTTCGTCAAAC
ACCAGCACGCCCCAACAATCCTCATCCGCCACCGCCCAACCACAACACAG
TTCCCAAGCACTCACTAAACGGAAACTTCAAGATCTGTTACATGAGATTG
ATCCCACAGAAACAATGGATGATGACGTGGAAGAGGCCTTGCTCCACATT
GCTGACGATTTCATTGAGAATGTCATCACGGCCTCGTGTCAACTAGCAAA
ACACAGGCGCTCGAATATATTGGACGTCAAAGATGTTCAGTTACACTTAG
ATCGTAATTGGAACATGTGGATCCCAGGCTTCGGTAGTGAAGATTTACGA
CCGTATAAAAAAGCACCGGCAACCGAAGCTCATAAGCAGAGATTGGCATT
GATAAAAAAAGCAATGAAGAAATAAATGGGAAGTATCCCCATTAACATCA
TTACAACAGGTGGTCAAACCTTTGCTGTTGCATCAAACATCTCAGGTGGC
CTACCTAACCAAGTCAGTCAGATACGCCCCATTGCACCGAATGCGGCCAC
GGTTGTTAGCCAGCTTGGTGGTGCACCACAGATACGAGCCGCTTTTGATG
GAAGAAAAATCAGCCAAGTGAAAGGTGTGCCCAATGTCGGTGCAATTACT
GCAGCAGCAACGGTTGTCGGTCAACCCGCCAAATCAACACAAGGGAACTT
AACGCTACCCATACAATCTATCACTGCGACAACTTCCAACACTCCTTCGT
CAAACACCAGCACGCCCCAACAATCCTCATCCGCCACCGCCCAACCACAA
CACAGTTCCCAAGCACTCACTAAACGGAAACTTCAAGATCTGTTACATGA
GATTGATCCCACAGAAACAATGGATGATGACGTGGAAGAGGCCTTGCTCC
ACATTGCTGACGATTTCATTGAGAATGTCATCACGGCCTCGTGTCAACTA
GCAAAACACAGGCGCTCGAATATATTGGACGTCAAAGATGTTCAGTTACA
CTTAGATCGTAATTGGAACATGTGGATCCCAGGCTTCGGTAGTGAAGATT
TACGACCGTATAAAAAAGCACCGGCAACCGAAGCTCATAAGCAGAGATTG
GCATTGATAAAAAAAGCAATGAAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012132XLOC_012132Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021639-proteinTCONS_00021639-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021639-exon-sc0000391-1491911889:175395..175802TCONS_00021639-exon-sc0000391-1491911889:175395..175802Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:175395..175802TCONS_00021639-exon-sc0000391-1510915933:175395..175802Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:175395..175802TCONS_00021639-exon-sc0000391-1575043694:175395..175802Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:176330..176518TCONS_00021639-exon-sc0000391-1491911889:176330..176518Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:176330..176518TCONS_00021639-exon-sc0000391-1510915933:176330..176518Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:176330..176518TCONS_00021639-exon-sc0000391-1575043694:176330..176518Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:177000..177032TCONS_00021639-exon-sc0000391-1491911889:177000..177032Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:177000..177032TCONS_00021639-exon-sc0000391-1510915933:177000..177032Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:177000..177032TCONS_00021639-exon-sc0000391-1575043694:177000..177032Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:177364..177438TCONS_00021639-exon-sc0000391-1491911889:177364..177438Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:177364..177438TCONS_00021639-exon-sc0000391-1510915933:177364..177438Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:177364..177438TCONS_00021639-exon-sc0000391-1575043694:177364..177438Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:178783..179088TCONS_00021639-exon-sc0000391-1491911889:178783..179088Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:178783..179088TCONS_00021639-exon-sc0000391-1510915933:178783..179088Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:178783..179088TCONS_00021639-exon-sc0000391-1575043694:178783..179088Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:179451..179539TCONS_00021639-exon-sc0000391-1491911889:179451..179539Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:179451..179539TCONS_00021639-exon-sc0000391-1510915933:179451..179539Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:179451..179539TCONS_00021639-exon-sc0000391-1575043694:179451..179539Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1491911889:179974..180663TCONS_00021639-exon-sc0000391-1491911889:179974..180663Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1510915933:179974..180663TCONS_00021639-exon-sc0000391-1510915933:179974..180663Clytia hemisphaericaexon
TCONS_00021639-exon-sc0000391-1575043694:179974..180663TCONS_00021639-exon-sc0000391-1575043694:179974..180663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:175395..180663 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.137	28.9288	21.1393	17.7483	31.0485	24.8219	25.9652	28.2247	20.8575	25.8823	17.2557	14.6162	11.4916	11.5002	9.50569	10.7617	21.613	19.7353	9.01692	10.1345	14.9488	16.1915	33.0879	27.9765	22.6955	19.0511	10.154	7.29011	17.5343	19.1081
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003228TFIID_TAF12
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00021639 vs. Swiss-Prot (Human)
Match: TAF12 (Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.581e-50
Identity = 76/104 (73.08%), Postives = 93/104 (89.42%), Query Frame = 3 
Query:  822 LTKRKLQDLLHEIDPTETMDDDVEEALLHIADDFIENVITASCQLAKHRRSNILDVKDVQLHLDRNWNMWIPGFGSEDLRPYKKAPATEAHKQRLALIKKAMKK 1133
            LTK+KLQDL+ E+DP E +D+DVEE LL IADDFIE+V+TA+CQLA+HR+S+ L+VKDVQLHL+R WNMWIPGFGSE++RPYKKA  TEAHKQR+ALI+K  KK
Sbjct:   58 LTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
The following BLAST results are available for this feature:
BLAST of TCONS_00021639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF121.581e-5073.08Transcription initiation factor TFIID subunit 12 O... [more]
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